Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A959
DateThu Jan 5 11:09:27 GMT 2012
Unique Job IDce1925147becd214

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3g0tA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution
Confidence and coverage
Confidence:100.0% Coverage: 96%
390 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPAPFGFDAPDEILVDVIR
Secondary structure 
SS confidence 
Disorder  ??????
??????
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  NLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGNGVSELIVQAMQALLNSGD
Secondary structure 
SS confidence 
Disorder 
??
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  EMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNP
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  TGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIAPLAPDLLTITFNGLSK
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  TYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRLCANVPAQHAIQTALGGYQSISEFI
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  TPGGRLYEQRNRAWELINDIPGVSCVKPRGALYMFPKIDAKRFNIHDDQKMVLDFLLQEK
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 
   .........370.........380.........390.........400.....
Sequence  VLLVQGTAFNWPWPDHFRIVTLPRVDDIELSLSKFARFLSGYHQL
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3g0t chain A

3D model

Region: 3 - 401
Aligned: 390
Modelled: 399
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution

Phyre2

PDB 1xi9 chain A

3D model

Region: 25 - 401
Aligned: 372
Modelled: 377
Confidence: 100.0%
Identity: 40%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 3h14 chain A

3D model

Region: 5 - 401
Aligned: 368
Modelled: 391
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi

Phyre2

PDB 1j32 chain A

3D model

Region: 5 - 402
Aligned: 383
Modelled: 391
Confidence: 100.0%
Identity: 29%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 3ihj chain A

3D model

Region: 1 - 404
Aligned: 399
Modelled: 404
Confidence: 100.0%
Identity: 26%
PDB header:transferase
Chain: A: PDB Molecule:alanine aminotransferase 2;
PDBTitle: human alanine aminotransferase 2 in complex with plp

Phyre2

PDB 1o4s chain A

3D model

Region: 6 - 400
Aligned: 373
Modelled: 381
Confidence: 100.0%
Identity: 27%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 1w7l chain A

3D model

Region: 5 - 401
Aligned: 384
Modelled: 394
Confidence: 100.0%
Identity: 20%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 3e2y chain B

3D model

Region: 6 - 398
Aligned: 380
Modelled: 393
Confidence: 100.0%
Identity: 21%
PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine

Phyre2

PDB 1ynu chain A

3D model

Region: 30 - 403
Aligned: 368
Modelled: 374
Confidence: 100.0%
Identity: 16%
PDB header:lyase
Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase;
PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine

Phyre2

PDB 3b46 chain B

3D model

Region: 8 - 400
Aligned: 385
Modelled: 393
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae

Phyre2

PDB 2zc0 chain C

3D model

Region: 5 - 403
Aligned: 389
Modelled: 393
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: C: PDB Molecule:alanine glyoxylate transaminase;
PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase

Phyre2

PDB 1bw0 chain A

3D model

Region: 7 - 402
Aligned: 392
Modelled: 396
Confidence: 100.0%
Identity: 23%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 2gb3 chain A domain 1

3D model

Region: 7 - 402
Aligned: 382
Modelled: 394
Confidence: 100.0%
Identity: 23%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 1b5p chain A

3D model

Region: 5 - 399
Aligned: 379
Modelled: 390
Confidence: 100.0%
Identity: 27%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 2o1b chain A

3D model

Region: 6 - 403
Aligned: 373
Modelled: 395
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class i;
PDBTitle: structure of aminotransferase from staphylococcus aureus

Phyre2

PDB 1u08 chain A

3D model

Region: 3 - 398
Aligned: 377
Modelled: 393
Confidence: 100.0%
Identity: 20%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 1m7y chain A

3D model

Region: 31 - 403
Aligned: 367
Modelled: 367
Confidence: 100.0%
Identity: 16%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 2r5e chain A domain 1

3D model

Region: 7 - 401
Aligned: 386
Modelled: 395
Confidence: 100.0%
Identity: 18%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 3eib chain B

3D model

Region: 1 - 403
Aligned: 390
Modelled: 403
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana

Phyre2

PDB 3jtx chain B

3D model

Region: 10 - 400
Aligned: 371
Modelled: 391
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution

Phyre2
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c3g0tA_
2
d1xi9a_
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c3h14A_
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d1j32a_
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c3ihjA_
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d1o4sa_
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d1w7la_
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c3e2yB_
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c1ynuA_
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c3b46B_
11
c2zc0C_
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d1bw0a_
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d2gb3a1
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d1b5pa_
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c2o1bA_
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d1u08a_
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d1m7ya_
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d2r5ea1
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c3eibB_
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c3jtxB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3g0tA_
100.0 18 PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution
2d1xi9a_
100.0 40 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
3c3h14A_
100.0 24 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
4d1j32a_
100.0 29 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
5c3ihjA_
100.0 26 PDB header:transferase
Chain: A: PDB Molecule:alanine aminotransferase 2;
PDBTitle: human alanine aminotransferase 2 in complex with plp
6d1o4sa_
100.0 27 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
7d1w7la_
100.0 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
8c3e2yB_
100.0 21 PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine
9c1ynuA_
100.0 16 PDB header:lyase
Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase;
PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine
10c3b46B_
100.0 18 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
11c2zc0C_
100.0 18 PDB header:transferase
Chain: C: PDB Molecule:alanine glyoxylate transaminase;
PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase
12d1bw0a_
100.0 23 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
13d2gb3a1
100.0 23 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
14d1b5pa_
100.0 27 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
15c2o1bA_
100.0 23 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class i;
PDBTitle: structure of aminotransferase from staphylococcus aureus
16d1u08a_
100.0 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
17d1m7ya_
100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
18d2r5ea1
100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
19c3eibB_
100.0 18 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana
20c3jtxB_
100.0 20 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
21d1wsta1
not modelled 100.0 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
22d1iaya_
not modelled 100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
23c2o0rA_
not modelled 100.0 21 PDB header:transferase
Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase);
PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis
24c3dzzB_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase;
PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
25c3qguB_
not modelled 100.0 18 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii
26d1gdea_
not modelled 100.0 29 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
27c3l8aB_
not modelled 100.0 19 PDB header:lyase
Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase;
PDBTitle: crystal structure of metc from streptococcus mutans
28c3if2B_
not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution
29d1vp4a_
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
30c3pplB_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution
31d1x0ma1
not modelled 100.0 21 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
32c2x5dD_
not modelled 100.0 24 PDB header:transferase
Chain: D: PDB Molecule:probable aminotransferase;
PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa
33d1c7na_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
34c3fdbA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase;
PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution
35c3ezsB_
not modelled 100.0 18 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase aspb;
PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution
36c3eleB_
not modelled 100.0 23 PDB header:transferase
Chain: B: PDB Molecule:amino transferase;
PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution
37c3dydB_
not modelled 100.0 23 PDB header:transferase
Chain: B: PDB Molecule:tyrosine aminotransferase;
PDBTitle: human tyrosine aminotransferase
38c3nraA_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution
39c3kaxB_
not modelled 100.0 18 PDB header:lyase
Chain: B: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
40c2z61A_
not modelled 100.0 28 PDB header:transferase
Chain: A: PDB Molecule:probable aspartate aminotransferase 2;
PDBTitle: crystal structure of mj0684 from methanococcus jannaschii2 reveals its similarity in the active site to kynurenine3 aminotransferases
41c3pdxA_
not modelled 100.0 23 PDB header:transferase
Chain: A: PDB Molecule:tyrosine aminotransferase;
PDBTitle: crystal structural of mouse tyrosine aminotransferase
42c2douA_
not modelled 100.0 20 PDB header:transferase
Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase;
PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8
43c3asaA_
not modelled 100.0 21 PDB header:transferase
Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis
44c2x5fB_
not modelled 100.0 18 PDB header:transferase
Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5'
PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase
45c3ez1A_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase mocr family;
PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution
46d1d2fa_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
47c1d2fB_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:maly protein;
PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression
48c3dc1A_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase
PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate
49d1v2da_
not modelled 100.0 23 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
50c3t18D_
not modelled 100.0 15 PDB header:transferase
Chain: D: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548.
51d2csta_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
52c3k7yA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: aspartate aminotransferase of plasmodium falciparum
53c3d6kB_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:putative aminotransferase;
PDBTitle: the crystal structure of a putative aminotransferase from2 corynebacterium diphtheriae
54c3rq1A_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula
55c3g7qA_
not modelled 100.0 21 PDB header:transferase
Chain: A: PDB Molecule:valine-pyruvate aminotransferase;
PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution
56d7aata_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
57d1ajsa_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
58c3cbfA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:alpha-aminodipate aminotransferase;
PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27
59d2ay1a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
60d1yaaa_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
61c2zy3A_
not modelled 100.0 15 PDB header:lyase
Chain: A: PDB Molecule:l-aspartate beta-decarboxylase;
PDBTitle: dodecameric l-aspartate beta-decarboxylase
62d2q7wa1
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
63c3op7A_
not modelled 100.0 25 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution
64c3f6tA_
not modelled 100.0 21 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution
65d3tata_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
66c3mebB_
not modelled 100.0 11 PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia
67c3ly1C_
not modelled 100.0 15 PDB header:transferase
Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution
68d1lc5a_
not modelled 100.0 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
69c3getA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution
70c3cq6E_
not modelled 100.0 17 PDB header:transferase
Chain: E: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound )
71c3eucB_
not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2;
PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
72c3ftbA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum
73c3bwnF_
not modelled 100.0 18 PDB header:transferase
Chain: F: PDB Molecule:l-tryptophan aminotransferase;
PDBTitle: l-tryptophan aminotransferase
74c3hdoB_
not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
75c3fkdC_
not modelled 100.0 18 PDB header:lyase
Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase;
PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis
76d1fg7a_
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
77d2f8ja1
not modelled 100.0 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
78c3ffhA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262.
79d2hoxa1
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
80c3p1tB_
not modelled 100.0 18 PDB header:transferase
Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution
81d2aeua1
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SelA-like
82c3f0hA_
not modelled 100.0 9 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
83d1tpla_
not modelled 100.0 10 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
84c2z9wA_
not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal
85c3hqtB_
not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
86c3a2bA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
87d1m6sa_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
88d1vjoa_
not modelled 100.0 10 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
89c2w8wA_
not modelled 100.0 11 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
90d1v72a1
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
91c3islA_
not modelled 100.0 11 PDB header:transferase
Chain: A: PDB Molecule:purine catabolism protein pucg;
PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
92d2e7ja1
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SepSecS-like
93c2dr1A_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase;
PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
94c3nnkC_
not modelled 100.0 12 PDB header:transferase
Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase;
PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
95d2bwna1
not modelled 100.0 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
96c3tqxA_
not modelled 100.0 11 PDB header:transferase
Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase;
PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
97d1svva_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
98c3mc6C_
not modelled 100.0 12 PDB header:lyase
Chain: C: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of scdpl1
99c2po3B_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
100c2huuA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:alanine glyoxylate aminotransferase;
PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
101d1t3ia_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
102d1jf9a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
103c3caiA_
not modelled 100.0 11 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
104c3ffrA_
not modelled 100.0 9 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
105d1bs0a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
106c3i4jC_
not modelled 100.0 12 PDB header:transferase
Chain: C: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans
107c2ordA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution
108c2hdyA_
not modelled 100.0 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase
109d1c7ga_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
110d2ch1a1
not modelled 99.9 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
111d1sffa_
not modelled 99.9 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
112d1b9ha_
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
113d1vefa1
not modelled 99.9 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
114d2c0ra1
not modelled 99.9 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
115c3mafB_
not modelled 99.9 13 PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)
116d1fc4a_
not modelled 99.9 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
117c3nx3A_
not modelled 99.9 10 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (argd) from2 campylobacter jejuni
118c2eh6A_
not modelled 99.9 16 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase from aquifex2 aeolicus vf5
119d1eg5a_
not modelled 99.9 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
120d1h0ca_
not modelled 99.9 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0