Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	K	L	L	K	T	I	M	R	A	G	T	A	T	V	K	Y	P	F	A	P	L	E	V	S	P	G	F	R	G	K	P	D	L	M	P	S	Q	C	I	A	C	G	A	C	A	C	A	C	P	A	N	A	L	T	I	Q	T	D
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	Q	Q	N	S	R	T	W	Q	L	Y	L	G	R	C	I	Y	C	G	R	C	E	E	V	C	P	T	R	A	I	Q	L	T	N	N	F	E	L	T	V	T	N	K	A	D	L	Y	T	R	A	T	F	H	L	Q	R	C	S	R	C
Secondary structure
SS confidence
Disorder			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	R	P	F	A	P	Q	K	T	I	A	L	A	A	E	L	L	A	Q	Q	Q	N	A	P	Q	N	R	E	M	L	W	A	Q	A	S	V	C	P	E	C	K	Q	R	A	T	L	I	N	D	D	T	D	V	L	L	V	A	K	E	Q
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?																																		?	?
Disorder confidence
		.
Sequence		L
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2fug chain 9 domain 1 Region: 18 - 111 Aligned: 94 Modelled: 94 Confidence: 99.9% Identity: 38% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2fug chain G Region: 18 - 111 Aligned: 94 Modelled: 94 Confidence: 99.9% Identity: 38% PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 1xer chain A Region: 15 - 94 Aligned: 79 Modelled: 80 Confidence: 99.6% Identity: 27% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Archaeal ferredoxins Phyre2 PDB 1gth chain D Region: 24 - 103 Aligned: 75 Modelled: 80 Confidence: 99.6% Identity: 21% PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Phyre2 PDB 1gte chain A domain 5 Region: 16 - 103 Aligned: 86 Modelled: 88 Confidence: 99.6% Identity: 20% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2gmh chain A Region: 35 - 93 Aligned: 59 Modelled: 59 Confidence: 99.6% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone Phyre2 PDB 3gyx chain J Region: 33 - 99 Aligned: 64 Modelled: 67 Confidence: 99.5% Identity: 28% PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas Phyre2 PDB 2fug chain 3 domain 4 Region: 10 - 91 Aligned: 82 Modelled: 82 Confidence: 99.5% Identity: 16% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1jb0 chain C Region: 33 - 106 Aligned: 74 Modelled: 74 Confidence: 99.5% Identity: 26% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 1kqf chain B Region: 31 - 106 Aligned: 68 Modelled: 76 Confidence: 99.5% Identity: 32% PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli Phyre2 PDB 1hfe chain L Region: 17 - 155 Aligned: 135 Modelled: 139 Confidence: 99.5% Identity: 18% PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans Phyre2 PDB 2gmh chain A domain 3 Region: 2 - 93 Aligned: 89 Modelled: 92 Confidence: 99.5% Identity: 18% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: ETF-QO domain-like Phyre2 PDB 2c3y chain A Region: 32 - 94 Aligned: 63 Modelled: 63 Confidence: 99.5% Identity: 30% PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus Phyre2 PDB 1hfe chain L domain 2 Region: 22 - 92 Aligned: 67 Modelled: 71 Confidence: 99.5% Identity: 25% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 7fd1 chain A Region: 35 - 96 Aligned: 56 Modelled: 62 Confidence: 99.5% Identity: 27% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 2c42 chain A domain 5 Region: 20 - 106 Aligned: 84 Modelled: 87 Confidence: 99.5% Identity: 26% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1h98 chain A Region: 33 - 106 Aligned: 68 Modelled: 74 Confidence: 99.4% Identity: 26% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 1jnr chain B Region: 33 - 99 Aligned: 64 Modelled: 67 Confidence: 99.4% Identity: 25% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1bc6 chain A Region: 35 - 96 Aligned: 56 Modelled: 62 Confidence: 99.4% Identity: 34% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 1rgv chain A Region: 35 - 97 Aligned: 63 Modelled: 63 Confidence: 99.4% Identity: 24% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 1c4c chain A Region: 2 - 155 Aligned: 154 Modelled: 154 Confidence: 99.3% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum Phyre2 1 d2fug91 2 c2fugG_ 3 d1xera_ 4 c1gthD_ 5 d1gtea5 6 c2gmhA_ 7 c3gyxJ_ 8 d2fug34 9 d1jb0c_ 10 c1kqfB_ 11 c1hfeL_ 12 d2gmha3 13 c2c3yA_ 14 d1hfel2 15 d7fd1a_ 16 d2c42a5 17 d1h98a_ 18 d1jnrb_ 19 d1bc6a_ 20 d1rgva_ 21 22 23 24 25 26 27 28 29 30 31 c1c4cA_ 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2fug91 99.9 38 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 2 c2fugG_ 99.9 38 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 3 d1xera_ 99.6 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 4 c1gthD_ 99.6 21 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 5 d1gtea5 99.6 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 6 c2gmhA_ 99.6 20 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 7 c3gyxJ_ 99.5 28 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 8 d2fug34 99.5 16 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 9 d1jb0c_ 99.5 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 10 c1kqfB_ 99.5 32 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 11 c1hfeL_ 99.5 18 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 12 d2gmha3 99.5 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 13 c2c3yA_ 99.5 30 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 14 d1hfel2 99.5 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 15 d7fd1a_ 99.5 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 16 d2c42a5 99.5 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 17 d1h98a_ 99.4 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 18 d1jnrb_ 99.4 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 19 d1bc6a_ 99.4 34 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 20 d1rgva_ 99.4 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 21 d1kqfb1 not modelled 99.4 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 22 c2zvsB_ not modelled 99.4 22 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 23 d2fdna_ not modelled 99.4 40 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 24 c2vpyB_ not modelled 99.4 23 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 25 d1dura_ not modelled 99.4 36 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 26 d3c8ya3 not modelled 99.4 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 27 d1blua_ not modelled 99.4 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 28 c1gx7A_ not modelled 99.4 27 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 29 c1ti2F_ not modelled 99.4 14 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 30 d1vjwa_ not modelled 99.4 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 31 c1c4cA_ 99.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 32 d1fcaa_ not modelled 99.3 36 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 33 d1h0hb_ not modelled 99.3 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 34 c2fgoA_ not modelled 99.3 26 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 35 d1vlfn2 not modelled 99.3 15 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 36 c2fugC_ not modelled 99.3 14 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 37 d1y5ib1 not modelled 99.3 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 38 d1clfa_ not modelled 99.3 36 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 39 c2ivfB_ not modelled 99.3 28 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 40 d1iqza_ not modelled 99.3 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 41 d1sj1a_ not modelled 99.2 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 42 c2v2kB_ not modelled 99.2 25 PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis 43 c3c7bE_ not modelled 99.1 26 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 44 d1fxra_ not modelled 99.1 16 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 45 c1dwlA_ not modelled 99.1 19 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation 46 c2v4jE_ not modelled 99.1 26 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 47 d3c7bb1 not modelled 99.0 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 48 c3c7bA_ not modelled 98.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 49 c2v4jA_ not modelled 98.7 13 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 50 c3bk7A_ not modelled 98.3 29 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 51 d2bs2b1 not modelled 98.1 15 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 52 c2b76N_ not modelled 98.0 26 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 53 c2bs2E_ not modelled 98.0 24 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 54 c1nekB_ not modelled 98.0 23 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 55 d1kf6b1 not modelled 97.9 36 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 56 c2h89B_ not modelled 97.9 25 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 57 d1nekb1 not modelled 97.8 23 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 58 d2v4jb1 not modelled 97.5 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 59 c3cf4A_ not modelled 97.4 34 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 60 d3c7ba1 not modelled 91.7 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 61 d2v4ja1 not modelled 91.2 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 62 d1fxda_ not modelled 84.4 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 63 c2vdcI_ not modelled 78.4 35 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 64 d1xpaa2 not modelled 67.3 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain 65 c2drpD_ not modelled 41.9 19 PDB header:transcription/dna Chain: D: PDB Molecule:protein (tramtrack dna-binding domain); PDBTitle: the crystal structure of a two zinc-finger peptide reveals2 an extension to the rules for zinc-finger/dna recognition 66 c1meyG_ not modelled 39.0 14 PDB header:transferase/dna Chain: G: PDB Molecule:consensus zinc finger; PDBTitle: crystal structure of a designed zinc finger protein bound2 to dna 67 d2cota1 not modelled 36.6 15 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 68 d1x6ea2 not modelled 36.2 15 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 69 d1llmc2 not modelled 35.1 24 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 70 c2k5cA_ not modelled 34.4 21 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 71 c2xigA_ not modelled 34.2 15 PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites 72 d2cota2 not modelled 33.8 11 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 73 d1x6ha2 not modelled 31.3 19 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 74 c1g8jC_ not modelled 31.2 13 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 75 d2ct1a2 not modelled 31.2 19 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 76 d1u85a1 not modelled 31.1 24 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 77 c2eoqA_ not modelled 27.9 12 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 224; PDBTitle: solution structure of the c2h2 type zinc finger (region 283-2 315) of human zinc finger protein 224 78 c2ytmA_ not modelled 27.8 11 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 28 homolog; PDBTitle: solution structure of the c2h2 type zinc finger (region 696-2 728) of human zinc finger protein 28 homolog 79 d1x6ea1 not modelled 27.1 12 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 80 c2ytbA_ not modelled 26.7 15 PDB header:metal binding protein Chain: A: PDB Molecule:zinc finger protein 32; PDBTitle: solution structure of c2h2 type zinc finger domain 5 in2 zinc finger protein 32 81 c2elsA_ not modelled 26.5 13 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 2nd c2h2 zinc finger of human2 zinc finger protein 406 82 c2yu5A_ not modelled 26.3 24 PDB header:rna binding protein Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the zf-c2h2 domain (669-699aa) in2 zinc finger protein 473 83 c3tsuA_ not modelled 26.0 24 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 84 c2eltA_ not modelled 25.5 13 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 3rd c2h2 zinc finger of human2 zinc finger protein 406 85 d1a1ia3 not modelled 25.3 24 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 86 d2epsa1 not modelled 24.8 13 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 87 d1xf7a_ not modelled 24.7 20 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 88 c1xf7A_ not modelled 24.7 20 PDB header:transcription Chain: A: PDB Molecule:wilms' tumor protein; PDBTitle: high resolution nmr structure of the wilms' tumor2 suppressor protein (wt1) finger 3 89 c2eq4A_ not modelled 24.5 15 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 224; PDBTitle: solution structure of the 11th c2h2 type zinc finger domain2 of zinc finger protein 224 90 d1p7aa_ not modelled 24.4 29 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 91 c2emwA_ not modelled 24.4 12 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 268; PDBTitle: solution structure of the c2h2 type zinc finger (region 301-2 331) of human zinc finger protein 268 92 d1srka_ not modelled 24.1 19 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 93 d1a1ia2 not modelled 23.4 19 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 94 c2ythA_ not modelled 23.4 11 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 224; PDBTitle: solution structure of the c2h2 type zinc finger (region 479-2 511) of human zinc finger protein 224 95 c2emlA_ not modelled 22.8 15 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 28 homolog; PDBTitle: solution structure of the c2h2 type zinc finger (region 752-2 784) of human zinc finger protein 28 homolog 96 c1va3A_ not modelled 22.8 15 PDB header:transcription Chain: A: PDB Molecule:transcription factor sp1; PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 3) 97 c2ytaA_ not modelled 22.5 19 PDB header:metal binding protein Chain: A: PDB Molecule:zinc finger protein 32; PDBTitle: solution structure of c2h2 type zinc finger domain 3 in2 zinc finger protein 32 98 c2yttA_ not modelled 22.5 19 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 204-2 236) of human zinc finger protein 473 99 c3mwmA_ not modelled 22.4 15 PDB header:transcription Chain: A: PDB Molecule:putative metal uptake regulation protein; PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur 100 c2en6A_ not modelled 22.3 11 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 268; PDBTitle: solution structure of the c2h2 type zinc finger (region 887-2 919) of human zinc finger protein 268 101 c2elqA_ not modelled 22.2 16 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 14th c2h2 zinc finger of human2 zinc finger protein 406 102 d1sp1a_ not modelled 22.2 15 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 103 c1sp1A_ not modelled 22.2 15 PDB header:zinc finger Chain: A: PDB Molecule:sp1f3; PDBTitle: nmr structure of a zinc finger domain from transcription2 factor sp1f3, minimized average structure 104 d1gtea1 not modelled 22.2 35 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain 105 c2kvfA_ not modelled 22.1 21 PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein 106 c1areA_ not modelled 22.0 30 PDB header:transcription regulation Chain: A: PDB Molecule:yeast transcription factor adr1; PDBTitle: structures of dna-binding mutant zinc finger domains:2 implications for dna binding 107 c2eovA_ not modelled 21.9 15 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 484; PDBTitle: solution structure of the c2h2 type zinc finger (region 519-2 551) of human zinc finger protein 484 108 c2em4A_ not modelled 21.6 11 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 28 homolog; PDBTitle: solution structure of the c2h2 type zinc finger (region 724-2 756) of human zinc finger protein 28 homolog 109 d1ubdc2 not modelled 21.4 19 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 110 c2epzA_ not modelled 21.0 11 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 28 homolog; PDBTitle: solution structure of the 4th c2h2 type zinc finger domain2 of zinc finger protein 28 homolog 111 c2ytjA_ not modelled 21.0 11 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 484; PDBTitle: solution structure of the c2h2 type zinc finger (region 771-2 803) of human zinc finger protein 484 112 c2yteA_ not modelled 20.9 14 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 484-2 512) of human zinc finger protein 473 113 c2en2A_ not modelled 20.8 12 PDB header:transcription Chain: A: PDB Molecule:b-cell lymphoma 6 protein; PDBTitle: solution structure of the c2h2 type zinc finger (region 598-2 626) of human b-cell lymphoma 6 protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0