Phyre 2 alignment of P77423 with d1xpaa2

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Job Description | P77423
Confidence | 67.32% | Date | Thu Jan 5 12:29:03 GMT 2012
Rank | 64 | Aligned Residues | 32
% Identity | 25% | Template | d1xpaa2
SCOP info | Glucocorticoid receptor-like (DNA-binding domain) | Glucocorticoid receptor-like (DNA-binding domain) | DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 111 | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | T | F | H | L | Q | R | C | S | R | C | E | R | P | F | A | P | Q | K | T | I | A | L | A | A | E | L | L | A | Q | Q | Q | N | A | P | Q | N | R | E | M | L | W | A | Q | A | S | V | C | P | E | C | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
Template Sequence |  | E | F | D | Y | V | I | C | E | E | C | G | K | E | F | . | . | . | . | . | . | . | . | M | D | S | Y | L | M | N | H | F | D | L | P | . | . | . | . | . | . | . | . | . | . | . | T | C | D | N | C | R
Template Known Secondary structure |  |  |  | S |  |  |  |  | S | S | S |  |  |  |  | . | . | . | . | . | . | . | . | S |  |  | S |  |  |  |  | T |  |  | S | . | . | . | . | . | . | . | . | . | . | . |  |  | T | T | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 99 | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | 120 | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | 130

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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