Phyre 2 Results for P77423

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P77423
Date | Thu Jan 5 12:29:03 GMT 2012
Unique Job ID | ccc383750c56c574

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d2fug91
Top template information
Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
Confidence and coverage
Confidence: | 99.9% | Coverage: | 52%
94 residues ( 52% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
154 residues ( 85%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | L | K | L | L | K | T | I | M | R | A | G | T | A | T | V | K | Y | P | F | A | P | L | E | V | S | P | G | F | R | G | K | P | D | L | M | P | S | Q | C | I | A | C | G | A | C | A | C | A | C | P | A | N | A | L | T | I | Q | T | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | D | Q | Q | N | S | R | T | W | Q | L | Y | L | G | R | C | I | Y | C | G | R | C | E | E | V | C | P | T | R | A | I | Q | L | T | N | N | F | E | L | T | V | T | N | K | A | D | L | Y | T | R | A | T | F | H | L | Q | R | C | S | R | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | E | R | P | F | A | P | Q | K | T | I | A | L | A | A | E | L | L | A | Q | Q | Q | N | A | P | Q | N | R | E | M | L | W | A | Q | A | S | V | C | P | E | C | K | Q | R | A | T | L | I | N | D | D | T | D | V | L | L | V | A | K | E | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | .
Sequence |  | L
Secondary structure |  |
SS confidence |  |
Disorder |  | ?
Disorder confidence |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2fug91 |

### PDB 2fug chain 9 domain 1

Region: 18 - 111
Aligned: 94
Modelled: 94
Confidence: 99.9%
Identity: 38%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2
2 |
| c2fugG_ |

### PDB 2fug chain G

Region: 18 - 111
Aligned: 94
Modelled: 94
Confidence: 99.9%
Identity: 38%
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus

Phyre2
3 |
| d1xera_ |

### PDB 1xer chain A

Region: 15 - 94
Aligned: 79
Modelled: 80
Confidence: 99.6%
Identity: 27%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Archaeal ferredoxins

Phyre2
4 |
| c1gthD_ |

### PDB 1gth chain D

Region: 24 - 103
Aligned: 75
Modelled: 80
Confidence: 99.6%
Identity: 21%
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil

Phyre2
5 |
| d1gtea5 |

### PDB 1gte chain A domain 5

Region: 16 - 103
Aligned: 86
Modelled: 88
Confidence: 99.6%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2
6 |
| c2gmhA_ |

### PDB 2gmh chain A

Region: 35 - 93
Aligned: 59
Modelled: 59
Confidence: 99.6%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone

Phyre2
7 |
| c3gyxJ_ |

### PDB 3gyx chain J

Region: 33 - 99
Aligned: 64
Modelled: 67
Confidence: 99.5%
Identity: 28%
PDB header:oxidoreductase
Chain: J: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas

Phyre2
8 |
| d2fug34 |

### PDB 2fug chain 3 domain 4

Region: 10 - 91
Aligned: 82
Modelled: 82
Confidence: 99.5%
Identity: 16%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2
9 |
| d1jb0c_ |

### PDB 1jb0 chain C

Region: 33 - 106
Aligned: 74
Modelled: 74
Confidence: 99.5%
Identity: 26%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: 7-Fe ferredoxin

Phyre2
10 |
| c1kqfB_ |

### PDB 1kqf chain B

Region: 31 - 106
Aligned: 68
Modelled: 76
Confidence: 99.5%
Identity: 32%
PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli

Phyre2
11 |
| c1hfeL_ |

### PDB 1hfe chain L

Region: 17 - 155
Aligned: 135
Modelled: 139
Confidence: 99.5%
Identity: 18%
PDB header:hydrogenase
Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1)
PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans

Phyre2
12 |
| d2gmha3 |

### PDB 2gmh chain A domain 3

Region: 2 - 93
Aligned: 89
Modelled: 92
Confidence: 99.5%
Identity: 18%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: ETF-QO domain-like

Phyre2
13 |
| c2c3yA_ |

### PDB 2c3y chain A

Region: 32 - 94
Aligned: 63
Modelled: 63
Confidence: 99.5%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus

Phyre2
14 |
| d1hfel2 |

### PDB 1hfe chain L domain 2

Region: 22 - 92
Aligned: 67
Modelled: 71
Confidence: 99.5%
Identity: 25%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2
15 |
| d7fd1a_ |

### PDB 7fd1 chain A

Region: 35 - 96
Aligned: 56
Modelled: 62
Confidence: 99.5%
Identity: 27%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: 7-Fe ferredoxin

Phyre2
16 |
| d2c42a5 |

### PDB 2c42 chain A domain 5

Region: 20 - 106
Aligned: 84
Modelled: 87
Confidence: 99.5%
Identity: 26%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2
17 |
| d1h98a_ |

### PDB 1h98 chain A

Region: 33 - 106
Aligned: 68
Modelled: 74
Confidence: 99.4%
Identity: 26%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: 7-Fe ferredoxin

Phyre2
18 |
| d1jnrb_ |

### PDB 1jnr chain B

Region: 33 - 99
Aligned: 64
Modelled: 67
Confidence: 99.4%
Identity: 25%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2
19 |
| d1bc6a_ |

### PDB 1bc6 chain A

Region: 35 - 96
Aligned: 56
Modelled: 62
Confidence: 99.4%
Identity: 34%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: 7-Fe ferredoxin

Phyre2
20 |
| d1rgva_ |

### PDB 1rgv chain A

Region: 35 - 97
Aligned: 63
Modelled: 63
Confidence: 99.4%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Short-chain ferredoxins

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
| c1c4cA_ |

### PDB 1c4c chain A

Region: 2 - 155
Aligned: 154
Modelled: 154
Confidence: 99.3%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum

Phyre2
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |
100 |
101 |
102 |
103 |
104 |
105 |
106 |
107 |
108 |
109 |
110 |
111 |
112 |
113 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2fug91 |
|  | 99.9 | 38 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
2 | c2fugG_ |
|  | 99.9 | 38 | PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
3 | d1xera_ |
|  | 99.6 | 27 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins
4 | c1gthD_ |
|  | 99.6 | 21 | PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
5 | d1gtea5 |
|  | 99.6 | 20 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
6 | c2gmhA_ |
|  | 99.6 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone
7 | c3gyxJ_ |
|  | 99.5 | 28 | PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
8 | d2fug34 |
|  | 99.5 | 16 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
9 | d1jb0c_ |
|  | 99.5 | 26 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin
10 | c1kqfB_ |
|  | 99.5 | 32 | PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli
11 | c1hfeL_ |
|  | 99.5 | 18 | PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans
12 | d2gmha3 |
|  | 99.5 | 18 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like
13 | c2c3yA_ |
|  | 99.5 | 30 | PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus
14 | d1hfel2 |
|  | 99.5 | 25 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
15 | d7fd1a_ |
|  | 99.5 | 27 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin
16 | d2c42a5 |
|  | 99.5 | 26 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
17 | d1h98a_ |
|  | 99.4 | 26 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin
18 | d1jnrb_ |
|  | 99.4 | 25 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
19 | d1bc6a_ |
|  | 99.4 | 34 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin
20 | d1rgva_ |
|  | 99.4 | 24 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins
21 | d1kqfb1 |
| not modelled | 99.4 | 32 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
22 | c2zvsB_ |
| not modelled | 99.4 | 22 | PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli
23 | d2fdna_ |
| not modelled | 99.4 | 40 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins
24 | c2vpyB_ |
| not modelled | 99.4 | 23 | PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
25 | d1dura_ |
| not modelled | 99.4 | 36 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins
26 | d3c8ya3 |
| not modelled | 99.4 | 22 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
27 | d1blua_ |
| not modelled | 99.4 | 22 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins
28 | c1gx7A_ |
| not modelled | 99.4 | 27 | PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase
29 | c1ti2F_ |
| not modelled | 99.4 | 14 | PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici
30 | d1vjwa_ |
| not modelled | 99.4 | 22 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin
31 | c1c4cA_ |
|  | 99.3 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
32 | d1fcaa_ |
| not modelled | 99.3 | 36 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins
33 | d1h0hb_ |
| not modelled | 99.3 | 25 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
34 | c2fgoA_ |
| not modelled | 99.3 | 26 | PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa
35 | d1vlfn2 |
| not modelled | 99.3 | 15 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
36 | c2fugC_ |
| not modelled | 99.3 | 14 | PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
37 | d1y5ib1 |
| not modelled | 99.3 | 24 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
38 | d1clfa_ |
| not modelled | 99.3 | 36 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins
39 | c2ivfB_ |
| not modelled | 99.3 | 28 | PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
40 | d1iqza_ |
| not modelled | 99.3 | 23 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin
41 | d1sj1a_ |
| not modelled | 99.2 | 21 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin
42 | c2v2kB_ |
| not modelled | 99.2 | 25 | PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis
43 | c3c7bE_ |
| not modelled | 99.1 | 26 | PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
44 | d1fxra_ |
| not modelled | 99.1 | 16 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin
45 | c1dwlA_ |
| not modelled | 99.1 | 19 | PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation
46 | c2v4jE_ |
| not modelled | 99.1 | 26 | PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
47 | d3c7bb1 |
| not modelled | 99.0 | 28 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
48 | c3c7bA_ |
| not modelled | 98.8 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
49 | c2v4jA_ |
| not modelled | 98.7 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
50 | c3bk7A_ |
| not modelled | 98.3 | 29 | PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii
51 | d2bs2b1 |
| not modelled | 98.1 | 15 | Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
52 | c2b76N_ |
| not modelled | 98.0 | 26 | PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
53 | c2bs2E_ |
| not modelled | 98.0 | 24 | PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes
54 | c1nekB_ |
| not modelled | 98.0 | 23 | PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound
55 | d1kf6b1 |
| not modelled | 97.9 | 36 | Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
56 | c2h89B_ |
| not modelled | 97.9 | 25 | PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound
57 | d1nekb1 |
| not modelled | 97.8 | 23 | Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
58 | d2v4jb1 |
| not modelled | 97.5 | 33 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
59 | c3cf4A_ |
| not modelled | 97.4 | 34 | PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex
60 | d3c7ba1 |
| not modelled | 91.7 | 19 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
61 | d2v4ja1 |
| not modelled | 91.2 | 18 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins
62 | d1fxda_ |
| not modelled | 84.4 | 20 | Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin
63 | c2vdcI_ |
| not modelled | 78.4 | 35 | PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.
64 | d1xpaa2 |
| not modelled | 67.3 | 25 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
65 | c2drpD_ |
| not modelled | 41.9 | 19 | PDB header:transcription/dna Chain: D: PDB Molecule:protein (tramtrack dna-binding domain); PDBTitle: the crystal structure of a two zinc-finger peptide reveals2 an extension to the rules for zinc-finger/dna recognition
66 | c1meyG_ |
| not modelled | 39.0 | 14 | PDB header:transferase/dna Chain: G: PDB Molecule:consensus zinc finger; PDBTitle: crystal structure of a designed zinc finger protein bound2 to dna
67 | d2cota1 |
| not modelled | 36.6 | 15 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
68 | d1x6ea2 |
| not modelled | 36.2 | 15 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
69 | d1llmc2 |
| not modelled | 35.1 | 24 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
70 | c2k5cA_ |
| not modelled | 34.4 | 21 | PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385
71 | c2xigA_ |
| not modelled | 34.2 | 15 | PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites
72 | d2cota2 |
| not modelled | 33.8 | 11 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
73 | d1x6ha2 |
| not modelled | 31.3 | 19 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
74 | c1g8jC_ |
| not modelled | 31.2 | 13 | PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis
75 | d2ct1a2 |
| not modelled | 31.2 | 19 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
76 | d1u85a1 |
| not modelled | 31.1 | 24 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
77 | c2eoqA_ |
| not modelled | 27.9 | 12 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 224; PDBTitle: solution structure of the c2h2 type zinc finger (region 283-2 315) of human zinc finger protein 224
78 | c2ytmA_ |
| not modelled | 27.8 | 11 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 28 homolog; PDBTitle: solution structure of the c2h2 type zinc finger (region 696-2 728) of human zinc finger protein 28 homolog
79 | d1x6ea1 |
| not modelled | 27.1 | 12 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
80 | c2ytbA_ |
| not modelled | 26.7 | 15 | PDB header:metal binding protein Chain: A: PDB Molecule:zinc finger protein 32; PDBTitle: solution structure of c2h2 type zinc finger domain 5 in2 zinc finger protein 32
81 | c2elsA_ |
| not modelled | 26.5 | 13 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 2nd c2h2 zinc finger of human2 zinc finger protein 406
82 | c2yu5A_ |
| not modelled | 26.3 | 24 | PDB header:rna binding protein Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the zf-c2h2 domain (669-699aa) in2 zinc finger protein 473
83 | c3tsuA_ |
| not modelled | 26.0 | 24 | PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate
84 | c2eltA_ |
| not modelled | 25.5 | 13 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 3rd c2h2 zinc finger of human2 zinc finger protein 406
85 | d1a1ia3 |
| not modelled | 25.3 | 24 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
86 | d2epsa1 |
| not modelled | 24.8 | 13 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
87 | d1xf7a_ |
| not modelled | 24.7 | 20 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
88 | c1xf7A_ |
| not modelled | 24.7 | 20 | PDB header:transcription Chain: A: PDB Molecule:wilms' tumor protein; PDBTitle: high resolution nmr structure of the wilms' tumor2 suppressor protein (wt1) finger 3
89 | c2eq4A_ |
| not modelled | 24.5 | 15 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 224; PDBTitle: solution structure of the 11th c2h2 type zinc finger domain2 of zinc finger protein 224
90 | d1p7aa_ |
| not modelled | 24.4 | 29 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
91 | c2emwA_ |
| not modelled | 24.4 | 12 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 268; PDBTitle: solution structure of the c2h2 type zinc finger (region 301-2 331) of human zinc finger protein 268
92 | d1srka_ |
| not modelled | 24.1 | 19 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
93 | d1a1ia2 |
| not modelled | 23.4 | 19 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
94 | c2ythA_ |
| not modelled | 23.4 | 11 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 224; PDBTitle: solution structure of the c2h2 type zinc finger (region 479-2 511) of human zinc finger protein 224
95 | c2emlA_ |
| not modelled | 22.8 | 15 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 28 homolog; PDBTitle: solution structure of the c2h2 type zinc finger (region 752-2 784) of human zinc finger protein 28 homolog
96 | c1va3A_ |
| not modelled | 22.8 | 15 | PDB header:transcription Chain: A: PDB Molecule:transcription factor sp1; PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 3)
97 | c2ytaA_ |
| not modelled | 22.5 | 19 | PDB header:metal binding protein Chain: A: PDB Molecule:zinc finger protein 32; PDBTitle: solution structure of c2h2 type zinc finger domain 3 in2 zinc finger protein 32
98 | c2yttA_ |
| not modelled | 22.5 | 19 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 204-2 236) of human zinc finger protein 473
99 | c3mwmA_ |
| not modelled | 22.4 | 15 | PDB header:transcription Chain: A: PDB Molecule:putative metal uptake regulation protein; PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur
100 | c2en6A_ |
| not modelled | 22.3 | 11 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 268; PDBTitle: solution structure of the c2h2 type zinc finger (region 887-2 919) of human zinc finger protein 268
101 | c2elqA_ |
| not modelled | 22.2 | 16 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 14th c2h2 zinc finger of human2 zinc finger protein 406
102 | d1sp1a_ |
| not modelled | 22.2 | 15 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
103 | c1sp1A_ |
| not modelled | 22.2 | 15 | PDB header:zinc finger Chain: A: PDB Molecule:sp1f3; PDBTitle: nmr structure of a zinc finger domain from transcription2 factor sp1f3, minimized average structure
104 | d1gtea1 |
| not modelled | 22.2 | 35 | Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain
105 | c2kvfA_ |
| not modelled | 22.1 | 21 | PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein
106 | c1areA_ |
| not modelled | 22.0 | 30 | PDB header:transcription regulation Chain: A: PDB Molecule:yeast transcription factor adr1; PDBTitle: structures of dna-binding mutant zinc finger domains:2 implications for dna binding
107 | c2eovA_ |
| not modelled | 21.9 | 15 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 484; PDBTitle: solution structure of the c2h2 type zinc finger (region 519-2 551) of human zinc finger protein 484
108 | c2em4A_ |
| not modelled | 21.6 | 11 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 28 homolog; PDBTitle: solution structure of the c2h2 type zinc finger (region 724-2 756) of human zinc finger protein 28 homolog
109 | d1ubdc2 |
| not modelled | 21.4 | 19 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
110 | c2epzA_ |
| not modelled | 21.0 | 11 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 28 homolog; PDBTitle: solution structure of the 4th c2h2 type zinc finger domain2 of zinc finger protein 28 homolog
111 | c2ytjA_ |
| not modelled | 21.0 | 11 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 484; PDBTitle: solution structure of the c2h2 type zinc finger (region 771-2 803) of human zinc finger protein 484
112 | c2yteA_ |
| not modelled | 20.9 | 14 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 484-2 512) of human zinc finger protein 473
113 | c2en2A_ |
| not modelled | 20.8 | 12 | PDB header:transcription Chain: A: PDB Molecule:b-cell lymphoma 6 protein; PDBTitle: solution structure of the c2h2 type zinc finger (region 598-2 626) of human b-cell lymphoma 6 protein

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0