Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AGA6
DateThu Jan 5 11:28:37 GMT 2012
Unique Job IDcc9c9c0e826a7ec2

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3c3wB_
Top template information
PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
Confidence and coverage
Confidence:100.0% Coverage: 99%
194 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI
Secondary structure 




















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Disorder  ??

























































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   .........70.........80.........90.........100.........110.........120
Sequence  SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC
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   .........130.........140.........150.........160.........170.........180
Sequence  YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL
Secondary structure 
















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Disorder 










????????






















?
















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   .........190......
Sequence  GVSNDVELARRMFDGW
Secondary structure 





SS confidence 















Disorder 












?
?
Disorder confidence 















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3c3w chain B

3D model

Region: 1 - 194
Aligned: 194
Modelled: 194
Confidence: 100.0%
Identity: 33%
PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr

Phyre2

PDB 1rnl chain A

3D model

Region: 2 - 194
Aligned: 193
Modelled: 193
Confidence: 100.0%
Identity: 26%
PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl

Phyre2

PDB 1zn2 chain A

3D model

Region: 3 - 196
Aligned: 191
Modelled: 194
Confidence: 100.0%
Identity: 29%
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr

Phyre2

PDB 3kln chain C

3D model

Region: 1 - 194
Aligned: 194
Modelled: 194
Confidence: 99.9%
Identity: 19%
PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst

Phyre2

PDB 1kgs chain A

3D model

Region: 2 - 196
Aligned: 193
Modelled: 195
Confidence: 99.9%
Identity: 21%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima

Phyre2

PDB 3q9s chain A

3D model

Region: 3 - 190
Aligned: 186
Modelled: 188
Confidence: 99.8%
Identity: 24%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans

Phyre2

PDB 3r0j chain A

3D model

Region: 1 - 185
Aligned: 182
Modelled: 185
Confidence: 99.8%
Identity: 18%
PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis

Phyre2

PDB 2oqr chain A

3D model

Region: 3 - 184
Aligned: 180
Modelled: 182
Confidence: 99.8%
Identity: 24%
PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis

Phyre2

PDB 1ys7 chain B

3D model

Region: 3 - 184
Aligned: 180
Modelled: 182
Confidence: 99.8%
Identity: 23%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+

Phyre2

PDB 2gwr chain A

3D model

Region: 2 - 185
Aligned: 182
Modelled: 184
Confidence: 99.7%
Identity: 21%
PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis

Phyre2

PDB 2hqr chain A

3D model

Region: 2 - 184
Aligned: 180
Modelled: 183
Confidence: 99.7%
Identity: 13%
PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism

Phyre2

PDB 1s8n chain A

3D model

Region: 2 - 181
Aligned: 179
Modelled: 180
Confidence: 99.7%
Identity: 23%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 1p2f chain A

3D model

Region: 3 - 185
Aligned: 178
Modelled: 183
Confidence: 99.7%
Identity: 20%
PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog

Phyre2

PDB 3szt chain B

3D model

Region: 128 - 194
Aligned: 67
Modelled: 67
Confidence: 99.7%
Identity: 28%
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone

Phyre2

PDB 2q0o chain A

3D model

Region: 129 - 195
Aligned: 67
Modelled: 67
Confidence: 99.6%
Identity: 21%
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing

Phyre2

PDB 1h0m chain D

3D model

Region: 127 - 194
Aligned: 68
Modelled: 68
Confidence: 99.6%
Identity: 18%
PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna

Phyre2

PDB 3qp5 chain C

3D model

Region: 138 - 193
Aligned: 56
Modelled: 56
Confidence: 99.6%
Identity: 30%
PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)

Phyre2

PDB 3clo chain C

3D model

Region: 128 - 196
Aligned: 69
Modelled: 69
Confidence: 99.6%
Identity: 35%
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution

Phyre2

PDB 2krf chain B

3D model

Region: 131 - 196
Aligned: 66
Modelled: 66
Confidence: 99.6%
Identity: 29%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a

Phyre2

PDB 1fse chain A

3D model

Region: 134 - 196
Aligned: 63
Modelled: 63
Confidence: 99.5%
Identity: 44%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: C-terminal effector domain of the bipartite response regulators
Family: GerE-like (LuxR/UhpA family of transcriptional regulators)

Phyre2
1

c3c3wB_
2

c1rnlA_
3

c1zn2A_
4

c3klnC_
5

c1kgsA_
6

c3q9sA_
7

c3r0jA_
8

c2oqrA_
9

c1ys7B_
10

c2gwrA_
11

c2hqrA_
12

d1s8na_
13

c1p2fA_
14

c3sztB_
15

c2q0oA_
16

c1h0mD_
17

c3qp5C_
18

c3cloC_
19

c2krfB_
20

d1fsea_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3c3wB_



100.0 33 PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
2c1rnlA_



100.0 26 PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl
3c1zn2A_



100.0 29 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
4c3klnC_



99.9 19 PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst
5c1kgsA_



99.9 21 PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima
6c3q9sA_



99.8 24 PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans
7c3r0jA_



99.8 18 PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis
8c2oqrA_



99.8 24 PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis
9c1ys7B_



99.8 23 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+
10c2gwrA_



99.7 21 PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis
11c2hqrA_



99.7 13 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
12d1s8na_



99.7 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
13c1p2fA_



99.7 20 PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog
14c3sztB_



99.7 28 PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
15c2q0oA_



99.6 21 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
16c1h0mD_



99.6 18 PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna
17c3qp5C_



99.6 30 PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
18c3cloC_



99.6 35 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution
19c2krfB_



99.6 29 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
20d1fsea_



99.5 44 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
21d1p4wa_



not modelled 99.5 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
22c1zljE_



not modelled 99.5 29 PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
23d1a04a1



not modelled 99.5 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
24d1l3la1



not modelled 99.5 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
25c2rnjA_



not modelled 99.5 29 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: nmr structure of the s. aureus vrar dna binding domain
26c3b2nA_



not modelled 99.5 26 PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein q99uf4;
PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
27c1x3uA_



not modelled 99.5 35 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein fixj;
PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
28c1a2oB_



not modelled 99.5 26 PDB header:bacterial chemotaxis
Chain: B: PDB Molecule:cheb methylesterase;
PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain
29c2jpcA_



not modelled 99.5 38 PDB header:dna binding protein
Chain: A: PDB Molecule:ssrb;
PDBTitle: ssrb dna binding protein
30c3t8yA_



not modelled 99.5 28 PDB header:hydrolase
Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate
PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb
31d1yioa1



not modelled 99.5 41 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
32c3eq2A_



not modelled 99.4 27 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb
33d1dz3a_



not modelled 99.4 24 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
34c3breA_



not modelled 99.4 26 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702
35c3cz5B_



not modelled 99.4 28 PDB header:transcription regulator
Chain: B: PDB Molecule:two-component response regulator, luxr family;
PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1
36c3eulB_



not modelled 99.4 33 PDB header:transcription
Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional
PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis
37d1a04a2



not modelled 99.4 33 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
38c3i5aA_



not modelled 99.4 25 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
39c2ayxA_



not modelled 99.4 22 PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain
40d1a2oa1



not modelled 99.4 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
41c1w25B_



not modelled 99.3 23 PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
42c3cu5B_



not modelled 99.3 19 PDB header:transcription regulator
Chain: B: PDB Molecule:two component transcriptional regulator, arac family;
PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg
43c3f6cB_



not modelled 99.3 25 PDB header:dna binding protein
Chain: B: PDB Molecule:positive transcription regulator evga;
PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
44c2qv0A_



not modelled 99.3 17 PDB header:transcription
Chain: A: PDB Molecule:protein mrke;
PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae
45c2qr3A_



not modelled 99.3 18 PDB header:transcription
Chain: A: PDB Molecule:two-component system response regulator;
PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis
46d1jbea_



not modelled 99.3 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
47d1u0sy_



not modelled 99.3 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
48c3rqiA_



not modelled 99.3 21 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein;
PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate
49c1ny5A_



not modelled 99.3 26 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
50c3cnbC_



not modelled 99.2 15 PDB header:dna binding protein
Chain: C: PDB Molecule:dna-binding response regulator, merr family;
PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h
51c3khtA_



not modelled 99.2 22 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator from hahella chejuensis
52c3c3mA_



not modelled 99.2 17 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1
53d1ny5a1



not modelled 99.2 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
54c3kyiB_



not modelled 99.2 28 PDB header:transferase
Chain: B: PDB Molecule:chey6 protein;
PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides
55c3cg0A_



not modelled 99.2 19 PDB header:lyase
Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase
PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding
56c3h1gA_



not modelled 99.2 26 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis protein chey homolog;
PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori
57d1kgsa2



not modelled 99.2 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
58d1p6qa_



not modelled 99.2 26 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
59c2jrlA_



not modelled 99.2 24 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer
60c2zwmA_



not modelled 99.2 25 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein yycf;
PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
61d1ys7a2



not modelled 99.2 27 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
62d2a9pa1



not modelled 99.2 27 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
63d1dbwa_



not modelled 99.2 30 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
64d1k66a_



not modelled 99.2 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
65c2rjnA_



not modelled 99.2 28 PDB header:hydrolase
Chain: A: PDB Molecule:response regulator receiver:metal-dependent
PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
66d1peya_



not modelled 99.2 18 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
67c3hebB_



not modelled 99.2 17 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator receiver domain protein (chey);
PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum
68c3nhzA_



not modelled 99.2 23 PDB header:dna binding protein
Chain: A: PDB Molecule:two component system transcriptional regulator mtra;
PDBTitle: structure of n-terminal domain of mtra
69c3ilhA_



not modelled 99.2 23 PDB header:transcription regulator
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii
70c3hdgE_



not modelled 99.2 22 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes
71c3jteA_



not modelled 99.2 27 PDB header:protein binding
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum
72c3m6mF_



not modelled 99.2 27 PDB header:lyase/transferase
Chain: F: PDB Molecule:sensory/regulatory protein rpfc;
PDBTitle: crystal structure of rpff complexed with rec domain of rpfc
73c3crnA_



not modelled 99.1 24 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like;
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
74c2qsjB_



not modelled 99.1 28 PDB header:transcription
Chain: B: PDB Molecule:dna-binding response regulator, luxr family;
PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi
75d2ayxa1



not modelled 99.1 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
76c3i42A_



not modelled 99.1 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-
PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus
77d1zesa1



not modelled 99.1 20 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
78d2pl1a1



not modelled 99.1 20 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
79c3gt7A_



not modelled 99.1 22 PDB header:hydrolase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus
80c3lteH_



not modelled 99.1 22 PDB header:transcription
Chain: H: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri
81c3t6kB_



not modelled 99.1 26 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator receiver;
PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution
82d2r25b1



not modelled 99.1 20 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
83d1heya_



not modelled 99.1 22 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
84c2qvgA_



not modelled 99.1 20 PDB header:transferase
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila
85d1i3ca_



not modelled 99.1 18 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
86d1mvoa_



not modelled 99.1 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
87d1qkka_



not modelled 99.1 33 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
88d1w25a1



not modelled 99.1 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
89c3dzdA_



not modelled 99.1 22 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state
90d1zgza1



not modelled 99.1 19 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
91c3hzhA_



not modelled 99.1 22 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis response regulator (chey-3);
PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi
92c2qzjC_



not modelled 99.1 16 PDB header:transcription
Chain: C: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile
93c3c97A_



not modelled 99.1 24 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:signal transduction histidine kinase;
PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae
94d1zh2a1



not modelled 99.1 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
95d1krwa_



not modelled 99.1 30 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
96d1xhfa1



not modelled 99.1 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
97d1mb3a_



not modelled 99.1 20 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
98c3cfyA_



not modelled 99.1 27 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative luxo repressor protein;
PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus
99c3cg4A_



not modelled 99.1 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like);
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
100c3hv2B_



not modelled 99.1 25 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator/hd domain protein;
PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5
101d1yioa2



not modelled 99.1 29 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
102c2zayA_



not modelled 99.1 25 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans
103c3mmnA_



not modelled 99.0 25 PDB header:transferase
Chain: A: PDB Molecule:histidine kinase homolog;
PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+
104c3n53B_



not modelled 99.0 22 PDB header:transcription
Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase;
PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus
105c3lufB_



not modelled 99.0 20 PDB header:signaling protein
Chain: B: PDB Molecule:two-component system response regulator/ggdef
PDBTitle: structure of probable two-component system response2 regulator/ggdef domain protein
106c3a0rB_



not modelled 99.0 22 PDB header:transferase
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
107c3grcD_



not modelled 99.0 17 PDB header:transferase
Chain: D: PDB Molecule:sensor protein, kinase;
PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
108c2jk1A_



not modelled 99.0 27 PDB header:dna-binding
Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1;
PDBTitle: crystal structure of the wild-type hupr receiver domain
109c2j48A_



not modelled 99.0 22 PDB header:transferase
Chain: A: PDB Molecule:two-component sensor kinase;
PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein.
110c3n0rA_



not modelled 99.0 17 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr stress response regulator at 1.25 angstrom2 resolution
111c3kcnA_



not modelled 99.0 25 PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase homolog;
PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica
112c3snkA_



not modelled 98.9 17 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator chey-like protein;
PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution
113c2qxyB_



not modelled 98.9 19 PDB header:transcription
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from thermotoga2 maritima
114c3nhmA_



not modelled 98.9 18 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from myxococcus xanthus
115c3luaA_



not modelled 98.9 22 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum
116c3gl9B_



not modelled 98.9 28 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator;
PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism
117c3eqzB_



not modelled 98.9 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea
118c2rdmB_



not modelled 98.9 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
119c3cwoX_



not modelled 98.9 23 PDB header:de novo protein
Chain: X: PDB Molecule:beta/alpha-barrel protein based on 1thf and 1tmy;
PDBTitle: a beta/alpha-barrel built by the combination of fragments2 from different folds
120c2hqoA_



not modelled 98.9 12 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0