PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3klnC_

Fold library id	PDB Header	Molecule	Title
c3klnC_	PDB header: transcription	Chain: C: PDB Molecule: transcriptional regulator, luxr family;	PDBTitle: vibrio cholerae vpst

Links to external resources
Added to library: Sat Aug 28 20:06:23 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E N K L N V R M L S D V C M Q S R L L K E A L E S K L P L A L E I T P F S E L W L E E N K P E S R S I Q M L V I D Y S R I S D D V L T D Y S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S S
G G G G G G T T T
S G G G G
G G G
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S F K H I S C P D A K E V I I N C P Q D I E H K L L F K W N N L A G V F Y I D D D M D T L I K G M S K I L Q D E M W L T R K L A Q E Y I L H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
G G G G G G S T T T T
T T
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y R A G N S V V T S Q M Y A K L T K R E Q Q I I K L L G S G A S N I E I A D K L F V S E N T V K T H L H N V F K K I N A K N R L Q A L I W A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T G G G S
T T
T T T T
T
S S

. . .

Sequence K N N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	N	K	L	N	V	R	M	L	S	D	V	C	M	Q	S	R	L	L	K	E	A	L	E	S	K	L	P	L	A	L	E	I	T	P	F	S	E	L	W	L	E	E	N	K	P	E	S	R	S	I	Q	M	L	V	I	D	Y	S	R	I	S	D	D	V	L	T	D	Y	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S							S			S														S	S								G	G	G	G	G	G	T	T	T		S	G	G	G	G								G	G	G			T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	F	K	H	I	S	C	P	D	A	K	E	V	I	I	N	C	P	Q	D	I	E	H	K	L	L	F	K	W	N	N	L	A	G	V	F	Y	I	D	D	D	M	D	T	L	I	K	G	M	S	K	I	L	Q	D	E	M	W	L	T	R	K	L	A	Q	E	Y	I	L	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T										S	S			G	G	G	G	G	G	S	T	T							T	T															T	T			B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	R	A	G	N	S	V	V	T	S	Q	M	Y	A	K	L	T	K	R	E	Q	Q	I	I	K	L	L	G	S	G	A	S	N	I	E	I	A	D	K	L	F	V	S	E	N	T	V	K	T	H	L	H	N	V	F	K	K	I	N	A	K	N	R	L	Q	A	L	I	W	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T							T	T	G	G	G	S													T	T								T	T	T	T																		T		S	S
	.	.	.
Sequence	K	N	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T