Email l.a.kelley@imperial.ac.uk Description P07648 Date Thu Jan 5 11:00:26 GMT 2012 Unique Job ID ca5204c70eaf15db

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1w36F_ 100.0 100 PDB header:recombination Chain: F: PDB Molecule:exodeoxyribonuclease v gamma chain; PDBTitle: recbcd:dna complex 2 d1w36c2 100.0 100 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 3 d1w36c1 100.0 100 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 4 d1w36c3 100.0 100 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Exodeoxyribonuclease V beta chain (RecC), C-terminal domain 5 d1uaaa2 100.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 6 c2is6B_ 100.0 15 PDB header:hydrolase/dna Chain: B: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex 7 c1uaaB_ 100.0 14 PDB header:hydrolase/dna Chain: B: PDB Molecule:protein (atp-dependent dna helicase rep.); PDBTitle: e. coli rep helicase/dna complex 8 d1pjra2 100.0 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 9 c1w36E_ 100.0 13 PDB header:recombination Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain; PDBTitle: recbcd:dna complex 10 c3lfuA_ 100.0 15 PDB header:hydrolase Chain: A: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of e. coli uvrd 11 d1w36b2 99.9 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 12 c1pjrA_ 99.9 13 PDB header:helicase Chain: A: PDB Molecule:pcra; PDBTitle: structure of dna helicase 13 c2pjrF_ 99.8 13 PDB header:hydrolase/dna Chain: F: PDB Molecule:protein (helicase pcra); PDBTitle: helicase product complex 14 c1qhhB_ 99.6 10 PDB header:hydrolase Chain: B: PDB Molecule:protein (pcra (subunit)); PDBTitle: structure of dna helicase with adpnp 15 c2pjrB_ 99.2 23 PDB header:hydrolase/dna Chain: B: PDB Molecule:protein (helicase pcra); PDBTitle: helicase product complex 16 c1qhhD_ 99.1 23 PDB header:hydrolase Chain: D: PDB Molecule:protein (pcra (subunit)); PDBTitle: structure of dna helicase with adpnp 17 c3dmnA_ 98.7 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dna helicase; PDBTitle: the crystal structure of the c-terminal domain of a possilbe dna2 helicase from lactobacillus plantarun wcfs1 18 d1w36d2 98.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 19 c1w36G_ 95.3 18 PDB header:recombination Chain: G: PDB Molecule:exodeoxyribonuclease v alpha chain; PDBTitle: recbcd:dna complex 20 c3e1sA_ 94.9 16 PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd; PDBTitle: structure of an n-terminal truncation of deinococcus radiodurans recd2 21 c2gk7A_ not modelled 91.5 22 PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: structural and functional insights into the human upf1 helicase core 22 c2xzlA_ not modelled 82.6 17 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent helicase nam7; PDBTitle: upf1-rna complex 23 c2wjyA_ not modelled 74.0 18 PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form 24 d1zrra1 not modelled 61.8 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 25 d1vr3a1 not modelled 61.2 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 26 c2l2qA_ not modelled 56.1 6 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 27 d1vzva_ not modelled 51.0 17 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 28 c3nbmA_ not modelled 39.5 11 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 29 c3h4rA_ not modelled 30.5 10 PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease 8; PDBTitle: crystal structure of e. coli rece exonuclease 30 d1at3a_ not modelled 30.5 19 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 31 d1etea_ not modelled 30.0 21 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 32 c3nctC_ not modelled 19.8 22 PDB header:dna binding protein, chaperone Chain: C: PDB Molecule:protein psib; PDBTitle: x-ray crystal structure of the bacterial conjugation factor psib, a2 negative regulator of reca 33 d1wnaa1 not modelled 19.5 28 Fold:TTHA1528-like Superfamily:TTHA1528-like Family:TTHA1528-like 34 c1qhhA_ not modelled 18.6 13 PDB header:hydrolase Chain: A: PDB Molecule:protein (pcra (subunit)); PDBTitle: structure of dna helicase with adpnp 35 d1t1ea2 not modelled 17.2 17 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 36 d2o8ra3 not modelled 15.4 11 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 37 d1l5wa_ not modelled 14.8 18 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Oligosaccharide phosphorylase 38 d1p2fa1 not modelled 14.4 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 39 c3edyA_ not modelled 14.3 14 PDB header:hydrolase Chain: A: PDB Molecule:tripeptidyl-peptidase 1; PDBTitle: crystal structure of the precursor form of human tripeptidyl-peptidase2 1 40 c3l0aA_ not modelled 14.3 4 PDB header:hydrolase Chain: A: PDB Molecule:putative exonuclease; PDBTitle: crystal structure of putative exonuclease (rer070207002219) from2 eubacterium rectale at 2.19 a resolution 41 d2bcqa3 not modelled 14.2 15 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:DNA polymerase beta-like 42 c1eg4A_ not modelled 13.6 12 PDB header:structural protein Chain: A: PDB Molecule:dystrophin; PDBTitle: structure of a dystrophin ww domain fragment in complex2 with a beta-dystroglycan peptide 43 c1dipA_ not modelled 12.4 29 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 44 d2cfua2 not modelled 11.5 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Alkylsulfatase-like 45 d2vo9a1 not modelled 11.4 16 Fold:Hedgehog/DD-peptidase Superfamily:Hedgehog/DD-peptidase Family:VanY-like 46 c1oywA_ not modelled 11.2 7 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase; PDBTitle: structure of the recq catalytic core 47 c2zxxA_ not modelled 11.2 29 PDB header:cell cycle/replication Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of cdt1/geminin complex 48 d2h5na1 not modelled 11.0 21 Fold:TerB-like Superfamily:TerB-like Family:PG1108-like 49 d1x52a1 not modelled 10.9 33 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 50 d2guka1 not modelled 10.5 13 Fold:PG1857-like Superfamily:PG1857-like Family:PG1857-like 51 d1pjqa3 not modelled 10.5 12 Fold:Siroheme synthase middle domains-like Superfamily:Siroheme synthase middle domains-like Family:Siroheme synthase middle domains-like 52 d1lb2b_ not modelled 10.4 14 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 53 d1oywa2 not modelled 10.2 7 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 54 c2vo9C_ not modelled 10.1 18 PDB header:hydrolase Chain: C: PDB Molecule:l-alanyl-d-glutamate peptidase; PDBTitle: crystal structure of the enzymatically active domain of the2 listeria monocytogenes bacteriophage 500 endolysin ply500 55 c3qy9C_ not modelled 10.0 13 PDB header:oxidoreductase Chain: C: PDB Molecule:dihydrodipicolinate reductase; PDBTitle: the crystal structure of dihydrodipicolinate reductase from2 staphylococcus aureus 56 d1pjra1 not modelled 10.0 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 57 d1iiba_ not modelled 9.9 16 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 58 c3dmqA_ not modelled 9.7 20 PDB header:hydrolase Chain: A: PDB Molecule:rna polymerase-associated protein rapa; PDBTitle: crystal structure of rapa, a swi2/snf2 protein that2 recycles rna polymerase during transcription 59 c2v1xB_ not modelled 9.6 14 PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent dna helicase q1; PDBTitle: crystal structure of human recq-like dna helicase 60 c3agjD_ not modelled 9.4 20 PDB header:translation/hydrolase Chain: D: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 61 c3agjB_ not modelled 9.4 20 PDB header:translation/hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 62 d1tdja3 not modelled 9.4 22 Fold:Ferredoxin-like Superfamily:ACT-like Family:Allosteric threonine deaminase C-terminal domain 63 c1vjqB_ not modelled 9.3 20 PDB header:structural genomics, de novo protein Chain: B: PDB Molecule:designed protein; PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability. 64 c2d1uA_ not modelled 9.2 26 PDB header:metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution strcuture of the periplasmic signaling domain of2 feca from escherichia coli 65 c1w5cT_ not modelled 9.0 23 PDB header:photosynthesis Chain: T: PDB Molecule:cytochrome c-550; PDBTitle: photosystem ii from thermosynechococcus elongatus 66 d1dt9a3 not modelled 9.0 13 Fold:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Superfamily:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Family:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 67 d2gj4a1 not modelled 8.9 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Oligosaccharide phosphorylase 68 d2vgna3 not modelled 8.9 27 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 69 c3i7tA_ not modelled 8.7 19 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rv2704, a member of highly conserved2 yjgf/yer057c/uk114 family, from mycobacterium tuberculosis 70 d1qzma_ not modelled 8.6 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 71 c3ijpA_ not modelled 8.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrodipicolinate reductase; PDBTitle: crystal structure of dihydrodipicolinate reductase from2 bartonella henselae at 2.0a resolution 72 c2cfuA_ not modelled 8.6 20 PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. 73 c2wvrB_ not modelled 8.4 29 PDB header:replication Chain: B: PDB Molecule:geminin; PDBTitle: human cdt1:geminin complex 74 d1v6ta_ not modelled 8.4 18 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 75 c3ddsB_ not modelled 8.2 15 PDB header:transferase Chain: B: PDB Molecule:glycogen phosphorylase, liver form; PDBTitle: crystal structure of glycogen phosphorylase complexed with an2 anthranilimide based inhibitor gsk261 76 d1kgsa1 not modelled 8.0 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 77 c2pmuD_ not modelled 8.0 14 PDB header:transcription regulation Chain: D: PDB Molecule:response regulator phop; PDBTitle: crystal structure of the dna-binding domain of phop 78 c1t1eA_ not modelled 7.7 16 PDB header:hydrolase Chain: A: PDB Molecule:kumamolisin; PDBTitle: high resolution crystal structure of the intact pro-2 kumamolisin, a sedolisin type proteinase (previously3 called kumamolysin or kscp) 79 c3ee6A_ not modelled 7.7 16 PDB header:hydrolase Chain: A: PDB Molecule:tripeptidyl-peptidase 1; PDBTitle: crystal structure analysis of tripeptidyl peptidase -i 80 d2fcla1 not modelled 7.7 19 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:TM1012-like 81 c3e20C_ not modelled 7.7 12 PDB header:translation Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: crystal structure of s.pombe erf1/erf3 complex 82 d2pbka1 not modelled 7.6 26 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 83 c2o8rA_ not modelled 7.6 11 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 84 c3lmeE_ not modelled 7.5 24 PDB header:translation Chain: E: PDB Molecule:possible translation initiation inhibitor; PDBTitle: structure of probable translation initiation inhibitor from2 (rpa2473) from rhodopseudomonas palustris 85 d1vm6a3 not modelled 7.4 30 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 86 c1p65A_ not modelled 7.3 24 PDB header:viral protein Chain: A: PDB Molecule:nucleocapsid protein; PDBTitle: crystal structure of the nucleocapsid protein of porcine reproductive2 and respiratory syndrome virus (prrsv) 87 d1p65a_ not modelled 7.3 24 Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Arterivirus nucleocapsid protein 88 d2aala1 not modelled 7.2 20 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MSAD-like 89 d1nrga_ not modelled 6.9 12 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 90 c1nrgA_ not modelled 6.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase; PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase 91 d1mz4a_ not modelled 6.8 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 92 d1cooa_ not modelled 6.7 13 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 93 c1um9D_ not modelled 6.7 22 PDB header:oxidoreductase Chain: D: PDB Molecule:2-oxo acid dehydrogenase beta subunit; PDBTitle: branched-chain 2-oxo acid dehydrogenase (e1) from thermus2 thermophilus hb8 in apo-form 94 c2vgmA_ not modelled 6.7 27 PDB header:cell cycle Chain: A: PDB Molecule:dom34; PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay. 95 d2ns0a1 not modelled 6.7 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RHA1 ro06458-like 96 c2ph0A_ not modelled 6.7 35 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q6d2t7_erwct protein from erwinia2 carotovora. nesg target ewr41. 97 c1xdoB_ not modelled 6.6 11 PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase 98 c2qrvC_ not modelled 6.6 14 PDB header:transferase/transferase regulator Chain: C: PDB Molecule:dna (cytosine-5)-methyltransferase 3-like; PDBTitle: structure of dnmt3a-dnmt3l c-terminal domain complex 99 d1uaaa1 not modelled 6.6 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain