Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	T	T	P	S	Q	R	L	G	F	L	H	H	I	R	L	V	P	L	F	A	C	I	L	G	G	I	L	V	L	F	A	L	S	S	A	L	A	G	Y	F	L	W	Q	A	D	R	D	Q	R	D	V	T	A	E	I	E	I	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?			?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	G	L	A	N	S	S	D	F	L	R	S	A	R	I	N	M	I	Q	A	G	A	A	S	R	I	A	E	M	E	A	M	K	R	N	I	A	Q	A	E	S	E	I	K	Q	S	Q	Q	G	Y	R	A	Y	Q	N	R	P	V	K	T
Secondary structure
SS confidence
Disorder																								?	?	?	?	?	?																											?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	A	D	E	A	L	D	T	E	L	N	Q	R	F	Q	A	Y	I	T	G	M	Q	P	M	L	K	Y	A	K	N	G	M	F	E	A	I	I	N	H	E	S	E	Q	I	R	P	L	D	N	A	Y	T	D	I	L	N	K	A	V	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	R	S	T	R	A	N	Q	L	A	E	L	A	H	Q	R	T	R	L	G	G	M	F	M	I	G	A	F	V	L	A	L	V	M	T	L	I	T	F	M	V	L	R	R	I	V	I	R	P	L	Q	H	A	A	Q	R	I	E	K	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	S	G	D	L	T	M	N	D	E	P	A	G	R	N	E	I	G	R	L	S	R	H	L	Q	Q	M	Q	H	S	L	G	M	T	V	G	T	V	R	Q	G	A	E	E	I	Y	R	G	T	S	E	I	S	A	G	N	A	D	L	S
Secondary structure
SS confidence
Disorder						?				?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		S	R	T	E	E	Q	A	A	A	I	E	Q	T	A	A	S	M	E	Q	L	T	A	T	V	K	Q	N	A	D	N	A	H	H	A	S	K	L	A	Q	E	A	S	I	K	A	S	D	G	G	Q	T	V	S	G	V	V	K	T	M	G
Secondary structure
SS confidence
Disorder																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		A	I	S	T	S	S	K	K	I	S	E	I	T	A	V	I	N	S	I	A	F	Q	T	N	I	L	A	L	N	A	A	V	E	A	A	R	A	G	E	Q	G	R	G	F	A	V	V	A	S	E	V	R	T	L	A	S	R	S	A	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		A	A	K	E	I	E	G	L	I	S	E	S	V	R	L	I	D	L	G	S	D	E	V	A	T	A	G	K	T	M	S	T	I	V	D	A	V	A	S	V	T	H	I	M	Q	E	I	A	A	A	S	D	E	Q	S	R	G	I	T	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		V	S	Q	A	I	S	E	M	D	K	V	T	Q	Q	N	A	S	L	V	E	E	A	S	A	A	A	V	S	L	E	E	Q	A	A	R	L	T	E	A	V	D	V	F	R	L	H	K	H	S	V	S	A	E	P	R	G	A	G	E	P
Secondary structure
SS confidence
Disorder																																												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.
Sequence		V	S	F	A	T	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qu7 chain A Region: 310 - 528 Aligned: 219 Modelled: 219 Confidence: 99.7% Identity: 69% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor Phyre2 PDB 2ch7 chain A Region: 338 - 524 Aligned: 187 Modelled: 187 Confidence: 99.3% Identity: 29% PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima Phyre2 PDB 3g67 chain A Region: 338 - 503 Aligned: 166 Modelled: 166 Confidence: 98.9% Identity: 23% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima Phyre2 PDB 2wpq chain A Region: 425 - 524 Aligned: 96 Modelled: 100 Confidence: 95.5% Identity: 6% PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion) Phyre2 PDB 2d4u chain A Region: 33 - 190 Aligned: 158 Modelled: 158 Confidence: 95.2% Identity: 13% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: crystal structure of the ligand binding domain of the bacterial serine2 chemoreceptor tsr Phyre2 PDB 3lnr chain A Region: 379 - 520 Aligned: 142 Modelled: 142 Confidence: 92.6% Identity: 9% PDB header:signaling protein Chain: A: PDB Molecule:aerotaxis transducer aer2; PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2 Phyre2 PDB 1sj8 chain A Region: 338 - 523 Aligned: 186 Modelled: 186 Confidence: 90.1% Identity: 9% PDB header:structural protein Chain: A: PDB Molecule:talin 1; PDBTitle: crystal structure of talin residues 482-789 Phyre2 PDB 2asx chain A domain 1 Region: 225 - 276 Aligned: 52 Modelled: 52 Confidence: 86.0% Identity: 25% Fold: HAMP domain-like Superfamily: HAMP domain-like Family: HAMP domain Phyre2 PDB 2lig chain A Region: 35 - 184 Aligned: 149 Modelled: 150 Confidence: 84.0% Identity: 13% Fold: Four-helical up-and-down bundle Superfamily: Aspartate receptor, ligand-binding domain Family: Aspartate receptor, ligand-binding domain Phyre2 PDB 2kbb chain A Region: 400 - 523 Aligned: 120 Modelled: 124 Confidence: 80.1% Identity: 13% PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin rod domain, 1655-1822 Phyre2 PDB 2rm8 chain A Region: 240 - 301 Aligned: 62 Modelled: 62 Confidence: 79.9% Identity: 21% PDB header:signaling protein Chain: A: PDB Molecule:sensory rhodopsin ii transducer; PDBTitle: the solution structure of phototactic transducer protein2 htrii linker region from natronomonas pharaonis Phyre2 PDB 1ei3 chain E Region: 409 - 544 Aligned: 136 Modelled: 136 Confidence: 77.2% Identity: 6% PDB header: PDB COMPND: Phyre2 PDB 2qih chain A Region: 389 - 518 Aligned: 130 Modelled: 130 Confidence: 70.5% Identity: 13% PDB header:cell adhesion Chain: A: PDB Molecule:protein uspa1; PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from2 moraxella catarrhalis Phyre2 PDB 1ei3 chain C Region: 407 - 524 Aligned: 118 Modelled: 118 Confidence: 70.0% Identity: 6% PDB header: PDB COMPND: Phyre2 PDB 3oja chain B Region: 386 - 524 Aligned: 139 Modelled: 139 Confidence: 66.1% Identity: 9% PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex Phyre2 PDB 1deq chain O Region: 413 - 541 Aligned: 127 Modelled: 127 Confidence: 59.2% Identity: 11% PDB header: PDB COMPND: Phyre2 PDB 3b5n chain F Region: 441 - 506 Aligned: 66 Modelled: 66 Confidence: 53.9% Identity: 14% PDB header:membrane protein Chain: F: PDB Molecule:protein sso1; PDBTitle: structure of the yeast plasma membrane snare complex Phyre2 PDB 1urq chain A Region: 477 - 524 Aligned: 48 Modelled: 47 Confidence: 52.5% Identity: 25% PDB header:transport protein Chain: A: PDB Molecule:m-tomosyn isoform; PDBTitle: crystal structure of neuronal q-snares in complex with2 r-snare motif of tomosyn Phyre2 PDB 3ipd chain B Region: 443 - 511 Aligned: 69 Modelled: 69 Confidence: 51.3% Identity: 9% PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 Phyre2 PDB 2ieq chain C Region: 429 - 518 Aligned: 85 Modelled: 90 Confidence: 49.5% Identity: 11% PDB header:viral protein Chain: C: PDB Molecule:spike glycoprotein; PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein Phyre2 1 c1qu7A_ 2 c2ch7A_ 3 c3g67A_ 4 c2wpqA_ 5 c2d4uA_ 6 c3lnrA_ 7 c1sj8A_ 8 d2asxa1 9 d2liga_ 10 c2kbbA_ 11 c2rm8A_ 12 c1ei3E_ 13 c2qihA_ 14 c1ei3C_ 15 c3ojaB_ 16 c1deqO_ 17 c3b5nF_ 18 c1urqA_ 19 c3ipdB_ 20 c2ieqC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1qu7A_ 99.7 69 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor 2 c2ch7A_ 99.3 29 PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima 3 c3g67A_ 98.9 23 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima 4 c2wpqA_ 95.5 6 PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion) 5 c2d4uA_ 95.2 13 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: crystal structure of the ligand binding domain of the bacterial serine2 chemoreceptor tsr 6 c3lnrA_ 92.6 9 PDB header:signaling protein Chain: A: PDB Molecule:aerotaxis transducer aer2; PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2 7 c1sj8A_ 90.1 9 PDB header:structural protein Chain: A: PDB Molecule:talin 1; PDBTitle: crystal structure of talin residues 482-789 8 d2asxa1 86.0 25 Fold:HAMP domain-like Superfamily:HAMP domain-like Family:HAMP domain 9 d2liga_ 84.0 13 Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain 10 c2kbbA_ 80.1 13 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin rod domain, 1655-1822 11 c2rm8A_ 79.9 21 PDB header:signaling protein Chain: A: PDB Molecule:sensory rhodopsin ii transducer; PDBTitle: the solution structure of phototactic transducer protein2 htrii linker region from natronomonas pharaonis 12 c1ei3E_ 77.2 6 PDB header: PDB COMPND: 13 c2qihA_ 70.5 13 PDB header:cell adhesion Chain: A: PDB Molecule:protein uspa1; PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from2 moraxella catarrhalis 14 c1ei3C_ 70.0 6 PDB header: PDB COMPND: 15 c3ojaB_ 66.1 9 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 16 c1deqO_ 59.2 11 PDB header: PDB COMPND: 17 c3b5nF_ 53.9 14 PDB header:membrane protein Chain: F: PDB Molecule:protein sso1; PDBTitle: structure of the yeast plasma membrane snare complex 18 c1urqA_ 52.5 25 PDB header:transport protein Chain: A: PDB Molecule:m-tomosyn isoform; PDBTitle: crystal structure of neuronal q-snares in complex with2 r-snare motif of tomosyn 19 c3ipdB_ 51.3 9 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 20 c2ieqC_ 49.5 11 PDB header:viral protein Chain: C: PDB Molecule:spike glycoprotein; PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein 21 c1deqF_ not modelled 47.8 7 PDB header: PDB COMPND: 22 c3hd7A_ not modelled 43.1 20 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 23 c1sfcJ_ not modelled 42.9 10 PDB header:transport protein Chain: J: PDB Molecule:protein (syntaxin 1a); PDBTitle: neuronal synaptic fusion complex 24 c2kseA_ not modelled 39.8 16 PDB header:transferase Chain: A: PDB Molecule:sensor protein qsec; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor qsec, center for structures of3 membrane proteins (csmp) target 4311c 25 c1n7sB_ not modelled 39.7 11 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 1a; PDBTitle: high resolution structure of a truncated neuronal snare2 complex 26 c1n7sA_ not modelled 34.7 20 PDB header:transport protein Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: high resolution structure of a truncated neuronal snare2 complex 27 c1sfcI_ not modelled 34.3 20 PDB header:transport protein Chain: I: PDB Molecule:protein (synaptobrevin 2); PDBTitle: neuronal synaptic fusion complex 28 c1gl2A_ not modelled 34.2 11 PDB header:membrane protein Chain: A: PDB Molecule:endobrevin; PDBTitle: crystal structure of an endosomal snare core complex 29 c2vs0B_ not modelled 33.8 13 PDB header:cell invasion Chain: B: PDB Molecule:virulence factor esxa; PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa 30 c2npsB_ not modelled 33.6 10 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 13; PDBTitle: crystal structure of the early endosomal snare complex 31 c2npsA_ not modelled 31.6 23 PDB header:transport protein Chain: A: PDB Molecule:vesicle-associated membrane protein 4; PDBTitle: crystal structure of the early endosomal snare complex 32 c3b5nE_ not modelled 28.2 20 PDB header:membrane protein Chain: E: PDB Molecule:synaptobrevin homolog 1; PDBTitle: structure of the yeast plasma membrane snare complex 33 c3gvmA_ not modelled 27.9 10 PDB header:viral protein Chain: A: PDB Molecule:putative uncharacterized protein sag1039; PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae 34 c1nafA_ not modelled 27.6 15 PDB header:signaling protein, membrane protein Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1; PDBTitle: crystal structure of the human gga1 gat domain 35 c3ok8A_ not modelled 21.4 9 PDB header:protein binding Chain: A: PDB Molecule:brain-specific angiogenesis inhibitor 1-associated protein PDBTitle: i-bar of pinkbar 36 d1eq1a_ not modelled 17.6 12 Fold:Apolipophorin-III Superfamily:Apolipophorin-III Family:Apolipophorin-III 37 c1zvaA_ not modelled 16.7 16 PDB header:viral protein Chain: A: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion 38 d1oxza_ not modelled 15.9 14 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 39 c1oxzA_ not modelled 15.9 14 PDB header:membrane protein Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1; PDBTitle: crystal structure of the human gga1 gat domain 40 c2bezC_ not modelled 15.2 9 PDB header:viral protein Chain: C: PDB Molecule:e2 glycoprotein; PDBTitle: structure of a proteolitically resistant core from the2 severe acute respiratory syndrome coronavirus s2 fusion3 protein 41 d2qamn1 not modelled 15.0 20 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 42 d2zjrk1 not modelled 14.9 20 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 43 d2b0ha1 not modelled 14.8 10 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:VBS domain 44 c2efrB_ not modelled 14.7 8 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution 45 c1sfcD_ not modelled 14.3 8 PDB header:transport protein Chain: D: PDB Molecule:protein (snap-25b); PDBTitle: neuronal synaptic fusion complex 46 c1l4aD_ not modelled 13.6 7 PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:s-snap25 fusion protein; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei 47 c3bboP_ not modelled 13.4 33 PDB header:ribosome Chain: P: PDB Molecule:ribosomal protein l17; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 48 c1kmiZ_ not modelled 13.4 9 PDB header:signaling protein Chain: Z: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of an e.coli chemotaxis protein, chez 49 c2d3eD_ not modelled 13.3 11 PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin 50 d1ez3a_ not modelled 13.2 11 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 51 d1wr6a1 not modelled 13.1 8 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 52 c3ghgK_ not modelled 12.7 6 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 53 c1m1jA_ not modelled 12.3 11 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 54 d2asra_ not modelled 12.2 15 Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain 55 c2jp3A_ not modelled 12.1 20 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 56 c2npsD_ not modelled 11.6 11 PDB header:transport protein Chain: D: PDB Molecule:syntaxin-6; PDBTitle: crystal structure of the early endosomal snare complex 57 c1wyyB_ not modelled 11.4 9 PDB header:viral protein Chain: B: PDB Molecule:e2 glycoprotein; PDBTitle: post-fusion hairpin conformation of the sars coronavirus spike2 glycoprotein 58 d1rkea1 not modelled 11.4 14 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 59 c2d4yA_ not modelled 11.1 10 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) 60 c2jo1A_ not modelled 10.7 16 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 61 c2kvpA_ not modelled 10.6 9 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin vbs3 domain, 1815-1973 62 c2l10A_ not modelled 10.6 10 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: structure of the talin rod residues, domain c 63 c3zrwB_ not modelled 10.5 9 PDB header:signaling protein Chain: B: PDB Molecule:af1503 protein, osmolarity sensor protein envz; PDBTitle: the structure of the dimeric hamp-dhp fusion a291v mutant 64 c2l7nA_ not modelled 10.4 15 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the b domain of talin 65 c1bf5A_ not modelled 10.4 7 PDB header:gene regulation/dna Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: tyrosine phosphorylated stat-1/dna complex 66 c2fxmB_ not modelled 10.4 6 PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment 67 c3c98B_ not modelled 9.9 10 PDB header:endocytosis/exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: revised structure of the munc18a-syntaxin1 complex 68 c3arcl_ not modelled 9.7 30 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 69 c2l9uA_ not modelled 9.7 13 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3; PDBTitle: spatial structure of dimeric erbb3 transmembrane domain 70 c1zv8I_ not modelled 9.7 7 PDB header:viral protein Chain: I: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion 71 c3bz2L_ not modelled 9.6 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer 72 c2axtl_ not modelled 9.6 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 73 c1s5lL_ not modelled 9.6 30 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 74 d2axtl1 not modelled 9.6 30 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein L, PsbL Family:PsbL-like 75 c3bz1L_ not modelled 9.6 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 76 c3a0bL_ not modelled 9.6 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 77 c3a0bl_ not modelled 9.6 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 78 c3kziL_ not modelled 9.6 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii 79 c3prrL_ not modelled 9.6 30 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer 80 c3prqL_ not modelled 9.6 30 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer 81 c1s5ll_ not modelled 9.6 30 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 82 c3arcL_ not modelled 9.6 30 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 83 c2axtL_ not modelled 9.6 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 84 c1wdfA_ not modelled 9.3 9 PDB header:viral protein Chain: A: PDB Molecule:e2 glycoprotein; PDBTitle: crystal structure of mhv spike protein fusion core 85 c3gxvD_ not modelled 9.3 6 PDB header:hydrolase/replication Chain: D: PDB Molecule:replicative dna helicase; PDBTitle: three-dimensional structure of n-terminal domain of dnab2 helicase from helicobacter pylori and its interactions with3 primase 86 d1s94a_ not modelled 9.3 14 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 87 c1s94A_ not modelled 9.3 14 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:s-syntaxin; PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei 88 c2zxeG_ not modelled 9.2 15 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 89 d1o3xa_ not modelled 9.1 16 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 90 d1x79a_ not modelled 9.0 14 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 91 d1g40a1 not modelled 9.0 25 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain 92 c3s90A_ not modelled 9.0 20 PDB header:cell adhesion Chain: A: PDB Molecule:vinculin; PDBTitle: human vinculin head domain vh1 (residues 1-252) in complex with murine2 talin (vbs33; residues 1512-1546) 93 c2kpeB_ not modelled 8.9 11 PDB header:membrane protein Chain: B: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles 94 c2kpeA_ not modelled 8.9 11 PDB header:membrane protein Chain: A: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles 95 c2xzrA_ not modelled 8.8 16 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 96 c3gxvC_ not modelled 8.8 6 PDB header:hydrolase/replication Chain: C: PDB Molecule:replicative dna helicase; PDBTitle: three-dimensional structure of n-terminal domain of dnab2 helicase from helicobacter pylori and its interactions with3 primase 97 c3m9bK_ not modelled 8.6 14 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 98 c2l16A_ not modelled 8.5 10 PDB header:protein transport Chain: A: PDB Molecule:sec-independent protein translocase protein tatad; PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles 99 c1i49A_ not modelled 8.5 8 PDB header:signaling protein Chain: A: PDB Molecule:arfaptin 2; PDBTitle: crystal structure analysis of arfaptin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0