Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	S	T	R	M	P	A	L	F	L	G	H	G	S	P	M	N	V	L	E	D	N	L	Y	T	R	S	W	Q	K	L	G	M	T	L	P	R	P	Q	A	I	V	V	V	S	A	H	W	F	T	R	G	T	G	V	T	A	M	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	P	P	T	I	H	D	F	G	G	F	P	Q	A	L	Y	D	T	H	Y	P	A	P	G	S	P	A	L	A	Q	R	L	V	E	L	L	A	P	I	P	V	T	L	D	K	E	A	W	G	F	D	H	G	S	W	G	V	L	I	K
Secondary structure
SS confidence
Disorder																																								?	?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	Y	P	D	A	D	I	P	M	V	Q	L	S	I	D	S	S	K	P	A	A	W	H	F	E	M	G	R	K	L	A	A	L	R	D	E	G	I	M	L	V	A	S	G	N	V	V	H	N	L	R	T	V	K	W	H	G	D	S	S
Secondary structure
SS confidence
Disorder															?	?	?																																				?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	Y	P	W	A	T	S	F	N	E	Y	V	K	A	N	L	T	W	Q	G	P	V	E	Q	H	P	L	V	N	Y	L	D	H	E	G	G	T	L	S	N	P	T	P	E	H	Y	L	P	L	L	Y	V	L	G	A	W	D	G	Q	E
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Sequence		P	I	T	I	P	V	E	G	I	E	M	G	S	L	S	M	L	S	V	Q	I	G
Secondary structure
SS confidence
Disorder		?																		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2pw6 chain A domain 1 Region: 5 - 262 Aligned: 244 Modelled: 244 Confidence: 100.0% Identity: 95% Fold: Phosphorylase/hydrolase-like Superfamily: LigB-like Family: LigB-like Phyre2 PDB 1b4u chain B Region: 8 - 261 Aligned: 240 Modelled: 254 Confidence: 100.0% Identity: 13% Fold: Phosphorylase/hydrolase-like Superfamily: LigB-like Family: LigB-like Phyre2 PDB 3bd0 chain D Region: 38 - 261 Aligned: 202 Modelled: 224 Confidence: 99.4% Identity: 12% PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii Phyre2 PDB 3lp5 chain A Region: 2 - 121 Aligned: 114 Modelled: 120 Confidence: 78.9% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:putative cell surface hydrolase; PDBTitle: the crystal structure of the putative cell surface hydrolase from2 lactobacillus plantarum wcfs1 Phyre2 PDB 1ja1 chain A domain 2 Region: 87 - 194 Aligned: 97 Modelled: 98 Confidence: 77.4% Identity: 9% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 2q7s chain A domain 1 Region: 24 - 156 Aligned: 124 Modelled: 133 Confidence: 73.0% Identity: 15% Fold: Phosphorylase/hydrolase-like Superfamily: Zn-dependent exopeptidases Family: FGase-like Phyre2 PDB 2pju chain A domain 1 Region: 119 - 199 Aligned: 74 Modelled: 81 Confidence: 68.1% Identity: 14% Fold: Chelatase-like Superfamily: PrpR receptor domain-like Family: PrpR receptor domain-like Phyre2 PDB 2pju chain D Region: 119 - 167 Aligned: 42 Modelled: 49 Confidence: 67.8% Identity: 17% PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr Phyre2 PDB 1bvy chain F Region: 87 - 194 Aligned: 92 Modelled: 108 Confidence: 61.7% Identity: 14% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1bvy chain F Region: 87 - 194 Aligned: 92 Modelled: 108 Confidence: 61.7% Identity: 14% PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) Phyre2 PDB 3bma chain C Region: 6 - 53 Aligned: 44 Modelled: 48 Confidence: 60.6% Identity: 25% PDB header:ligase Chain: C: PDB Molecule:d-alanyl-lipoteichoic acid synthetase; PDBTitle: crystal structure of d-alanyl-lipoteichoic acid synthetase from2 streptococcus pneumoniae r6 Phyre2 PDB 3ozb chain F Region: 7 - 103 Aligned: 92 Modelled: 97 Confidence: 58.0% Identity: 23% PDB header:transferase Chain: F: PDB Molecule:methylthioadenosine phosphorylase; PDBTitle: crystal structure of 5'-methylthioinosine phosphorylase from2 psedomonas aeruginosa in complex with hypoxanthine Phyre2 PDB 2q5c chain A Region: 85 - 173 Aligned: 82 Modelled: 89 Confidence: 57.9% Identity: 12% PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum Phyre2 PDB 2ac7 chain A domain 1 Region: 7 - 103 Aligned: 91 Modelled: 97 Confidence: 54.3% Identity: 8% Fold: Phosphorylase/hydrolase-like Superfamily: Purine and uridine phosphorylases Family: Purine and uridine phosphorylases Phyre2 PDB 3exa chain D Region: 82 - 223 Aligned: 140 Modelled: 142 Confidence: 52.9% Identity: 14% PDB header:transferase Chain: D: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of the full-length trna2 isopentenylpyrophosphate transferase (bh2366) from3 bacillus halodurans, northeast structural genomics4 consortium target bhr41. Phyre2 PDB 3n0v chain D Region: 76 - 173 Aligned: 85 Modelled: 91 Confidence: 45.4% Identity: 15% PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution Phyre2 PDB 3fle chain B Region: 4 - 121 Aligned: 108 Modelled: 114 Confidence: 40.1% Identity: 15% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:se_1780 protein; PDBTitle: se_1780 protein of unknown function from staphylococcus epidermidis. Phyre2 PDB 1b1c chain A Region: 87 - 194 Aligned: 97 Modelled: 108 Confidence: 37.5% Identity: 9% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 1ojr chain A Region: 71 - 116 Aligned: 41 Modelled: 46 Confidence: 35.6% Identity: 24% Fold: AraD/HMP-PK domain-like Superfamily: AraD/HMP-PK domain-like Family: AraD-like aldolase/epimerase Phyre2 PDB 1f4p chain A Region: 87 - 194 Aligned: 93 Modelled: 104 Confidence: 35.4% Identity: 13% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 1 d2pw6a1 2 d1b4ub_ 3 c3bd0D_ 4 c3lp5A_ 5 d1ja1a2 6 d2q7sa1 7 d2pjua1 8 c2pjuD_ 9 d1bvyf_ 10 c1bvyF_ 11 c3bmaC_ 12 c3ozbF_ 13 c2q5cA_ 14 d2ac7a1 15 c3exaD_ 16 c3n0vD_ 17 c3fleB_ 18 d1b1ca_ 19 d1ojra_ 20 d1f4pa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2pw6a1 100.0 95 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 2 d1b4ub_ 100.0 13 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 3 c3bd0D_ 99.4 12 PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii 4 c3lp5A_ 78.9 15 PDB header:hydrolase Chain: A: PDB Molecule:putative cell surface hydrolase; PDBTitle: the crystal structure of the putative cell surface hydrolase from2 lactobacillus plantarum wcfs1 5 d1ja1a2 77.4 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 6 d2q7sa1 73.0 15 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:FGase-like 7 d2pjua1 68.1 14 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 8 c2pjuD_ 67.8 17 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 9 d1bvyf_ 61.7 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 10 c1bvyF_ 61.7 14 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 11 c3bmaC_ 60.6 25 PDB header:ligase Chain: C: PDB Molecule:d-alanyl-lipoteichoic acid synthetase; PDBTitle: crystal structure of d-alanyl-lipoteichoic acid synthetase from2 streptococcus pneumoniae r6 12 c3ozbF_ 58.0 23 PDB header:transferase Chain: F: PDB Molecule:methylthioadenosine phosphorylase; PDBTitle: crystal structure of 5'-methylthioinosine phosphorylase from2 psedomonas aeruginosa in complex with hypoxanthine 13 c2q5cA_ 57.9 12 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 14 d2ac7a1 54.3 8 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 15 c3exaD_ 52.9 14 PDB header:transferase Chain: D: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of the full-length trna2 isopentenylpyrophosphate transferase (bh2366) from3 bacillus halodurans, northeast structural genomics4 consortium target bhr41. 16 c3n0vD_ 45.4 15 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 17 c3fleB_ 40.1 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:se_1780 protein; PDBTitle: se_1780 protein of unknown function from staphylococcus epidermidis. 18 d1b1ca_ 37.5 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 19 d1ojra_ 35.6 24 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 20 d1f4pa_ 35.4 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 21 c3tl6B_ not modelled 31.2 12 PDB header:transferase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of purine nucleoside phosphorylase from entamoeba2 histolytica 22 d1odma_ not modelled 31.0 15 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 23 c3qpbB_ not modelled 30.8 9 PDB header:transferase Chain: B: PDB Molecule:uridine phosphorylase; PDBTitle: crystal structure of streptococcus pyogenes uridine phosphorylase2 reveals a subclass of the np-i superfamily 24 d2gv8a2 not modelled 27.3 13 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 25 d1vhwa_ not modelled 26.6 12 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 26 c2gfqC_ not modelled 26.3 15 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:upf0204 protein ph0006; PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii 27 d2odfa1 not modelled 24.2 15 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:FGase-like 28 c3jrnA_ not modelled 22.9 13 PDB header:plant protein Chain: A: PDB Molecule:at1g72930 protein; PDBTitle: crystal structure of tir domain from arabidopsis thaliana 29 d1pvta_ not modelled 22.3 29 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 30 d1w4xa2 not modelled 22.2 6 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 31 c3eufC_ not modelled 22.0 18 PDB header:transferase Chain: C: PDB Molecule:uridine phosphorylase 1; PDBTitle: crystal structure of bau-bound human uridine phosphorylase 1 32 d1jw9b_ not modelled 22.0 26 Fold:Activating enzymes of the ubiquitin-like proteins Superfamily:Activating enzymes of the ubiquitin-like proteins Family:Molybdenum cofactor biosynthesis protein MoeB 33 c3i0pA_ not modelled 21.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from entamoeba histolytica 34 d1odka_ not modelled 20.8 11 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 35 d1rxya_ not modelled 20.1 13 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 36 c1tjnA_ not modelled 19.7 26 PDB header:lyase Chain: A: PDB Molecule:sirohydrochlorin cobaltochelatase; PDBTitle: crystal structure of hypothetical protein af0721 from archaeoglobus2 fulgidus 37 d1tjna_ not modelled 19.7 26 Fold:Chelatase-like Superfamily:Chelatase Family:CbiX-like 38 d1cqxa3 not modelled 19.3 14 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain 39 d1npya1 not modelled 18.6 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 40 d2h1ia1 not modelled 18.4 17 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase/thioesterase 1 41 c2cdh1_ not modelled 18.4 13 PDB header:transferase Chain: 1: PDB Molecule:enoyl reductase; PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution. 42 c1zfnA_ not modelled 18.4 16 PDB header:transferase Chain: A: PDB Molecule:adenylyltransferase thif; PDBTitle: structural analysis of escherichia coli thif 43 d2i9ca1 not modelled 18.2 16 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:RPA1889-like 44 d1np3a2 not modelled 17.9 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 45 c1y8qD_ not modelled 17.4 16 PDB header:ligase Chain: D: PDB Molecule:ubiquitin-like 2 activating enzyme e1b; PDBTitle: sumo e1 activating enzyme sae1-sae2-mg-atp complex 46 d1p77a1 not modelled 17.4 7 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 47 d1wyza1 not modelled 17.2 16 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 48 c3d3qB_ not modelled 17.1 13 PDB header:transferase Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of trna delta(2)-isopentenylpyrophosphate2 transferase (se0981) from staphylococcus epidermidis.3 northeast structural genomics consortium target ser100 49 d1t8sa_ not modelled 16.7 12 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 50 d1vkza2 not modelled 16.6 25 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 51 d2fuea1 not modelled 16.3 28 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 52 c3k35D_ not modelled 16.3 11 PDB header:hydrolase Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: crystal structure of human sirt6 53 c3pkiF_ not modelled 16.3 11 PDB header:hydrolase Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: human sirt6 crystal structure in complex with adp ribose 54 d1uala_ not modelled 16.2 9 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 55 d1iiba_ not modelled 16.2 23 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 56 d1a9xa3 not modelled 16.1 25 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 57 c3cmmA_ not modelled 14.8 24 PDB header:ligase/protein binding Chain: A: PDB Molecule:ubiquitin-activating enzyme e1 1; PDBTitle: crystal structure of the uba1-ubiquitin complex 58 d1q1ra2 not modelled 14.6 19 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 59 d1nvta1 not modelled 14.3 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 60 c3h9gA_ not modelled 14.3 11 PDB header:transferase/antibiotic Chain: A: PDB Molecule:mccb protein; PDBTitle: crystal structure of e. coli mccb + mcca-n7isoasn 61 c3kydB_ not modelled 14.2 16 PDB header:ligase Chain: B: PDB Molecule:sumo-activating enzyme subunit 2; PDBTitle: human sumo e1~sumo1-amp tetrahedral intermediate mimic 62 d1nxua_ not modelled 14.1 28 Fold:L-sulfolactate dehydrogenase-like Superfamily:L-sulfolactate dehydrogenase-like Family:L-sulfolactate dehydrogenase-like 63 c1wb4A_ not modelled 14.1 18 PDB header:hydrolase Chain: A: PDB Molecule:endo-1,4-beta-xylanase y; PDBTitle: s954a mutant of the feruloyl esterase module from2 clostridium thermocellum complexed with sinapinate 64 c1z2iA_ not modelled 14.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of agrobacterium tumefaciens malate2 dehydrogenase, new york structural genomics consortium 65 d2csua2 not modelled 13.9 13 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 66 d1ykga1 not modelled 13.8 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 67 d2bida_ not modelled 13.6 18 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 68 d1gsoa2 not modelled 13.6 17 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 69 c2rgwD_ not modelled 13.5 15 PDB header:transferase Chain: D: PDB Molecule:aspartate carbamoyltransferase; PDBTitle: catalytic subunit of m. jannaschii aspartate2 transcarbamoylase 70 d1wb4a1 not modelled 13.5 23 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase 71 d1nhpa2 not modelled 13.0 15 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 72 d1vi2a1 not modelled 12.9 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 73 c3louB_ not modelled 12.8 14 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution 74 c3vh1A_ not modelled 12.7 18 PDB header:metal binding protein Chain: A: PDB Molecule:ubiquitin-like modifier-activating enzyme atg7; PDBTitle: crystal structure of saccharomyces cerevisiae atg7 (1-595) 75 d1vdca2 not modelled 12.6 14 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 76 c3gucB_ not modelled 12.2 27 PDB header:transferase Chain: B: PDB Molecule:ubiquitin-like modifier-activating enzyme 5; PDBTitle: human ubiquitin-activating enzyme 5 in complex with amppnp 77 c3nbmA_ not modelled 12.1 9 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 78 d1a9xa4 not modelled 11.9 36 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 79 c3h16A_ not modelled 11.8 10 PDB header:signaling protein Chain: A: PDB Molecule:tir protein; PDBTitle: crystal structure of a bacteria tir domain, pdtir from2 paracoccus denitrificans 80 c2l2qA_ not modelled 11.8 27 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 81 c3vh3A_ not modelled 11.7 18 PDB header:metal binding protein/protein transport Chain: A: PDB Molecule:ubiquitin-like modifier-activating enzyme atg7; PDBTitle: crystal structure of atg7ctd-atg8 complex 82 d1pv1a_ not modelled 11.6 27 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hypothetical esterase YJL068C 83 d5pnta_ not modelled 11.5 25 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 84 d1dg9a_ not modelled 11.3 25 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 85 d1k9sa_ not modelled 11.2 11 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 86 c2wmyH_ not modelled 11.1 27 PDB header:hydrolase Chain: H: PDB Molecule:putative acid phosphatase wzb; PDBTitle: crystal structure of the tyrosine phosphatase wzb from2 escherichia coli k30 in complex with sulphate. 87 d1yqea1 not modelled 11.0 23 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 88 d1gpja2 not modelled 10.9 32 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 89 c2rduA_ not modelled 10.8 23 PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxyacid oxidase 1; PDBTitle: crystal structure of human glycolate oxidase in complex with2 glyoxylate 90 c1w4xA_ not modelled 10.7 7 PDB header:oxygenase Chain: A: PDB Molecule:phenylacetone monooxygenase; PDBTitle: phenylacetone monooxygenase, a baeyer-villiger2 monooxygenase 91 c2g8yB_ not modelled 10.6 21 PDB header:oxidoreductase Chain: B: PDB Molecule:malate/l-lactate dehydrogenases; PDBTitle: the structure of a putative malate/lactate dehydrogenase from e. coli. 92 c2gi4A_ not modelled 10.6 27 PDB header:hydrolase Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase; PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni. 93 c3nvbA_ not modelled 10.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of n-terminal part of the protein bf1531 from2 bacteroides fragilis containing phosphatase domain complexed with mg3 and tungstate 94 c3hbaA_ not modelled 10.4 21 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerase; PDBTitle: crystal structure of a putative phosphosugar isomerase (sden_2705)2 from shewanella denitrificans os217 at 2.00 a resolution 95 d2gfqa1 not modelled 10.4 14 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 96 d1trba2 not modelled 10.3 21 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 97 c3t38B_ not modelled 10.1 16 PDB header:oxidoreductase Chain: B: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum thioredoxin-dependent arsenate reductase2 cg_arsc1' 98 d1fl2a2 not modelled 9.9 13 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 99 c1np3B_ not modelled 9.8 12 PDB header:oxidoreductase Chain: B: PDB Molecule:ketol-acid reductoisomerase; PDBTitle: crystal structure of class i acetohydroxy acid isomeroreductase from2 pseudomonas aeruginosa

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0