Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	V	R	R	L	T	S	P	R	L	E	F	E	A	A	A	I	Y	E	Y	P	E	H	L	R	S	F	L	N	D	L	P	T	R	P	G	V	Y	L	F	H	G	E	S	D	T	M	P	L	Y	I	G	K	S	V	N	I	R	S	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	L	S	H	L	R	T	P	D	E	A	A	M	L	R	Q	S	R	R	I	S	W	I	C	T	A	G	E	I	G	A	L	L	L	E	A	R	L	I	K	E	Q	Q	P	L	F	N	K	R	L	R	R	N	R	Q	L	C	A	L	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	N	E	K	R	V	D	V	V	Y	A	K	E	V	D	F	S	R	A	P	N	L	F	G	L	F	A	N	R	R	A	A	L	Q	A	L	Q	T	I	A	D	E	Q	K	L	C	Y	G	L	L	G	L	E	P	L	S	R	G	R	A
Secondary structure
SS confidence
Disorder															?																																						?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		C	F	R	S	A	L	K	R	C	A	G	A	C	C	G	K	E	S	H	E	E	H	A	L	R	L	R	Q	S	L	E	R	L	R	V	V	C	W	P	W	Q	G	A	V	A	L	K	E	Q	H	P	E	M	T	Q	Y	H	I	I	Q
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Sequence		N	W	L	W	L	G	A	V	N	S	L	E	E	A	T	T	L	I	R	T	P	A	G	F	D	H	D	G	Y	K	I	L	C	K	P	L	L	S	G	N	Y	E	I	T	E	L	D	P	A	N	D	Q	R	A	S
Secondary structure
SS confidence
Disorder																				?	?	?	?	?		?																							?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1yd2 chain A Region: 22 - 109 Aligned: 86 Modelled: 88 Confidence: 99.9% Identity: 33% PDB header:dna binding protein Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease domain of2 uvrc from thermotoga maritima: point mutant y19f bound to the3 catalytic divalent cation Phyre2 PDB 1yd6 chain A Region: 22 - 112 Aligned: 90 Modelled: 91 Confidence: 99.9% Identity: 31% PDB header:dna binding protein Chain: A: PDB Molecule:uvrc; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from bacillus caldotenax Phyre2 PDB 2wsh chain C Region: 31 - 108 Aligned: 77 Modelled: 78 Confidence: 99.9% Identity: 23% PDB header:hydrolase Chain: C: PDB Molecule:endonuclease ii; PDBTitle: structure of bacteriophage t4 endoii e118a mutant Phyre2 PDB 1mk0 chain A Region: 34 - 116 Aligned: 82 Modelled: 83 Confidence: 98.6% Identity: 15% Fold: GIY-YIG endonuclease Superfamily: GIY-YIG endonuclease Family: GIY-YIG endonuclease Phyre2 PDB 3nic chain A Region: 33 - 108 Aligned: 76 Modelled: 76 Confidence: 96.8% Identity: 26% PDB header:hydrolase/dna Chain: A: PDB Molecule:eco29kir; PDBTitle: dna binding and cleavage by the giy-yig endonuclease r.eco29ki2 inactive variant y49f Phyre2 PDB 1zg2 chain A Region: 37 - 100 Aligned: 62 Modelled: 64 Confidence: 94.0% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0213 protein bh0048; PDBTitle: solution nmr structure of the upf0213 protein bh0048 from2 bacillus halodurans. northeast structural genomics target3 bhr2. Phyre2 PDB 1ywl chain A Region: 37 - 103 Aligned: 64 Modelled: 67 Confidence: 93.8% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0213 protein ef2693; PDBTitle: solution nmr structure of the protein ef2693 from e.2 faecalis: northeast structural genomics consortium target3 efr36 Phyre2 PDB 1pd0 chain A domain 4 Region: 36 - 56 Aligned: 20 Modelled: 21 Confidence: 68.5% Identity: 25% Fold: Gelsolin-like Superfamily: C-terminal, gelsolin-like domain of Sec23/24 Family: C-terminal, gelsolin-like domain of Sec23/24 Phyre2 PDB 1uta chain A Region: 142 - 162 Aligned: 21 Modelled: 21 Confidence: 41.4% Identity: 14% Fold: Ferredoxin-like Superfamily: Sporulation related repeat Family: Sporulation related repeat Phyre2 PDB 1xdp chain A domain 4 Region: 37 - 61 Aligned: 24 Modelled: 25 Confidence: 38.0% Identity: 33% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 2gj3 chain A Region: 20 - 54 Aligned: 31 Modelled: 35 Confidence: 37.8% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:nitrogen fixation regulatory protein; PDBTitle: crystal structure of the fad-containing pas domain of the2 protein nifl from azotobacter vinelandii. Phyre2 PDB 2o8r chain A domain 4 Region: 37 - 61 Aligned: 24 Modelled: 25 Confidence: 36.6% Identity: 21% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 1x60 chain A Region: 142 - 162 Aligned: 21 Modelled: 21 Confidence: 34.5% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:sporulation-specific n-acetylmuramoyl-l-alanine PDBTitle: solution structure of the peptidoglycan binding domain of2 b. subtilis cell wall lytic enzyme cwlc Phyre2 PDB 1pd0 chain A Region: 33 - 56 Aligned: 23 Modelled: 24 Confidence: 32.7% Identity: 26% PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5) Phyre2 PDB 2qkp chain D Region: 22 - 54 Aligned: 29 Modelled: 33 Confidence: 31.8% Identity: 28% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of c-terminal domain of smu_1151c from streptococcus2 mutans Phyre2 PDB 2riv chain B Region: 33 - 56 Aligned: 24 Modelled: 24 Confidence: 30.7% Identity: 33% PDB header:signaling protein Chain: B: PDB Molecule:thyroxine-binding globulin; PDBTitle: crystal structure of the reactive loop cleaved human thyroxine binding2 globulin Phyre2 PDB 3egx chain B Region: 36 - 56 Aligned: 20 Modelled: 21 Confidence: 28.2% Identity: 25% PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1 Phyre2 PDB 3luq chain C Region: 22 - 54 Aligned: 29 Modelled: 33 Confidence: 27.4% Identity: 24% PDB header:transferase Chain: C: PDB Molecule:sensor protein; PDBTitle: the crystal structure of a pas domain from a sensory box2 histidine kinase regulator from geobacter sulfurreducens to3 2.5a Phyre2 PDB 3eh2 chain B Region: 36 - 56 Aligned: 20 Modelled: 21 Confidence: 27.2% Identity: 30% PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24c; PDBTitle: crystal structure of the human copii-coat protein sec24c Phyre2 PDB 1m2v chain B Region: 36 - 56 Aligned: 20 Modelled: 21 Confidence: 26.8% Identity: 25% PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the yeast sec23/24 heterodimer Phyre2 1 c1yd2A_ 2 c1yd6A_ 3 c2wshC_ 4 d1mk0a_ 5 c3nicA_ 6 c1zg2A_ 7 c1ywlA_ 8 d1pd0a4 9 d1utaa_ 10 d1xdpa4 11 c2gj3A_ 12 d2o8ra4 13 c1x60A_ 14 c1pd0A_ 15 c2qkpD_ 16 c2rivB_ 17 c3egxB_ 18 c3luqC_ 19 c3eh2B_ 20 c1m2vB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1yd2A_ 99.9 33 PDB header:dna binding protein Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease domain of2 uvrc from thermotoga maritima: point mutant y19f bound to the3 catalytic divalent cation 2 c1yd6A_ 99.9 31 PDB header:dna binding protein Chain: A: PDB Molecule:uvrc; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from bacillus caldotenax 3 c2wshC_ 99.9 23 PDB header:hydrolase Chain: C: PDB Molecule:endonuclease ii; PDBTitle: structure of bacteriophage t4 endoii e118a mutant 4 d1mk0a_ 98.6 15 Fold:GIY-YIG endonuclease Superfamily:GIY-YIG endonuclease Family:GIY-YIG endonuclease 5 c3nicA_ 96.8 26 PDB header:hydrolase/dna Chain: A: PDB Molecule:eco29kir; PDBTitle: dna binding and cleavage by the giy-yig endonuclease r.eco29ki2 inactive variant y49f 6 c1zg2A_ 94.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0213 protein bh0048; PDBTitle: solution nmr structure of the upf0213 protein bh0048 from2 bacillus halodurans. northeast structural genomics target3 bhr2. 7 c1ywlA_ 93.8 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0213 protein ef2693; PDBTitle: solution nmr structure of the protein ef2693 from e.2 faecalis: northeast structural genomics consortium target3 efr36 8 d1pd0a4 68.5 25 Fold:Gelsolin-like Superfamily:C-terminal, gelsolin-like domain of Sec23/24 Family:C-terminal, gelsolin-like domain of Sec23/24 9 d1utaa_ 41.4 14 Fold:Ferredoxin-like Superfamily:Sporulation related repeat Family:Sporulation related repeat 10 d1xdpa4 38.0 33 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 11 c2gj3A_ 37.8 19 PDB header:transferase Chain: A: PDB Molecule:nitrogen fixation regulatory protein; PDBTitle: crystal structure of the fad-containing pas domain of the2 protein nifl from azotobacter vinelandii. 12 d2o8ra4 36.6 21 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 13 c1x60A_ 34.5 14 PDB header:hydrolase Chain: A: PDB Molecule:sporulation-specific n-acetylmuramoyl-l-alanine PDBTitle: solution structure of the peptidoglycan binding domain of2 b. subtilis cell wall lytic enzyme cwlc 14 c1pd0A_ 32.7 26 PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5) 15 c2qkpD_ 31.8 28 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of c-terminal domain of smu_1151c from streptococcus2 mutans 16 c2rivB_ 30.7 33 PDB header:signaling protein Chain: B: PDB Molecule:thyroxine-binding globulin; PDBTitle: crystal structure of the reactive loop cleaved human thyroxine binding2 globulin 17 c3egxB_ 28.2 25 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1 18 c3luqC_ 27.4 24 PDB header:transferase Chain: C: PDB Molecule:sensor protein; PDBTitle: the crystal structure of a pas domain from a sensory box2 histidine kinase regulator from geobacter sulfurreducens to3 2.5a 19 c3eh2B_ 27.2 30 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24c; PDBTitle: crystal structure of the human copii-coat protein sec24c 20 c1m2vB_ 26.8 25 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the yeast sec23/24 heterodimer 21 c3eg9B_ not modelled 26.5 30 PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin 22 c1hleB_ not modelled 25.4 13 PDB header:hydrolase inhibitor(serine proteinase) Chain: B: PDB Molecule:horse leukocyte elastase inhibitor; PDBTitle: crystal structure of cleaved equine leucocyte elastase2 inhibitor determined at 1.95 angstroms resolution 23 c1xdoB_ not modelled 23.0 33 PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase 24 d1gcca_ not modelled 20.8 33 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:GCC-box binding domain 25 c2o8rA_ not modelled 20.4 21 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 26 c3mxqC_ not modelled 20.1 13 PDB header:transferase Chain: C: PDB Molecule:sensor protein; PDBTitle: crystal structure of sensory box sensor histidine kinase from vibrio2 cholerae 27 c3mr0B_ not modelled 20.1 10 PDB header:transcription regulator Chain: B: PDB Molecule:sensory box histidine kinase/response regulator; PDBTitle: crystal structure of sensory box histidine kinase/response regulator2 from burkholderia thailandensis e264 28 d1g1pa_ not modelled 19.7 71 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Conotoxin 29 c1jjoE_ not modelled 18.7 25 PDB header:signaling protein Chain: E: PDB Molecule:neuroserpin; PDBTitle: crystal structure of mouse neuroserpin (cleaved form) 30 c2jheB_ not modelled 18.6 17 PDB header:transcription Chain: B: PDB Molecule:transcription regulator tyrr; PDBTitle: n-terminal domain of tyrr transcription factor (residues 1 -2 190) 31 d1nwza_ not modelled 17.8 15 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:PYP-like 32 d1lkta_ not modelled 17.6 29 Fold:Head-binding domain of phage P22 tailspike protein Superfamily:Head-binding domain of phage P22 tailspike protein Family:Head-binding domain of phage P22 tailspike protein 33 c2w0nA_ not modelled 17.0 17 PDB header:transferase Chain: A: PDB Molecule:sensor protein dcus; PDBTitle: plasticity of pas domain and potential role for signal2 transduction in the histidine-kinase dcus 34 c3f02C_ not modelled 16.9 17 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:neuroserpin; PDBTitle: cleaved human neuroserpin 35 c3mfxA_ not modelled 16.8 14 PDB header:transcription Chain: A: PDB Molecule:sensory box/ggdef family protein; PDBTitle: crystal structure of the sensory box domain of the sensory-2 box/ggdef protein so_1695 from shewanella oneidensis,3 northeast structural genomics consortium target sor288b 36 c2h4qB_ not modelled 15.8 13 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:heterochromatin-associated protein ment; PDBTitle: crystal structure of a m-loop deletion variant of ment in2 the cleaved conformation 37 c9paiB_ not modelled 15.3 19 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:protein (plasminogen activator inhibitor-1) residues 365- PDBTitle: cleaved substrate variant of plasminogen activator inhibitor-1 38 d1v9ya_ not modelled 15.0 19 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:Heme-binding PAS domain 39 c1v9yA_ not modelled 15.0 19 PDB header:signaling protein Chain: A: PDB Molecule:heme pas sensor protein; PDBTitle: crystal structure of the heme pas sensor domain of ec dos (ferric2 form) 40 c1f0cB_ not modelled 15.0 20 PDB header:viral protein Chain: B: PDB Molecule:ice inhibitor; PDBTitle: structure of the viral serpin crma 41 d2gjva1 not modelled 14.8 27 Fold:Phage tail protein-like Superfamily:Phage tail protein-like Family:STM4215-like 42 c3gr1A_ not modelled 14.4 15 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 43 c2gjvF_ not modelled 13.8 27 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative cytoplasmic protein; PDBTitle: crystal structure of a protein of unknown function from salmonella2 typhimurium 44 c1yylM_ not modelled 13.8 56 PDB header:viral protein/immune system Chain: M: PDB Molecule:cd4m33, scorpion-toxin mimic of cd4; PDBTitle: crystal structure of cd4m33, a scorpion-toxin mimic of cd4, in complex2 with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody3 17b 45 c1yylS_ not modelled 13.7 56 PDB header:viral protein/immune system Chain: S: PDB Molecule:cd4m33, scorpion-toxin mimic of cd4; PDBTitle: crystal structure of cd4m33, a scorpion-toxin mimic of cd4, in complex2 with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody3 17b 46 c2r78D_ not modelled 13.2 11 PDB header:transferase Chain: D: PDB Molecule:sensor protein; PDBTitle: crystal structure of a domain of the sensory box sensor2 histidine kinase/response regulator from geobacter3 sulfurreducens 47 c7apiB_ not modelled 12.9 33 PDB header:proteinase inhibitor Chain: B: PDB Molecule:alpha 1-antitrypsin; PDBTitle: the s variant of human alpha1-antitrypsin, structure and implications2 for function and metabolism 48 c3eg9A_ not modelled 12.4 14 PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec23a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin 49 c2vkyB_ not modelled 12.2 29 PDB header:viral protein Chain: B: PDB Molecule:tail protein, piigcn4; PDBTitle: headbinding domain of phage p22 tailspike c-terminally2 fused to isoleucine zipper piigcn4 (chimera i) 50 c3mjqB_ not modelled 12.1 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the pas domain of q24qt8_deshy protein from2 desulfitobacterium hafniense. northeast structural genomics3 consortium target dhr85c. 51 d2fcja1 not modelled 11.8 16 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 52 d1d0na6 not modelled 11.1 19 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 53 c2i9nA_ not modelled 9.8 22 PDB header:de novo protein Chain: A: PDB Molecule:mhb4a peptide; PDBTitle: design of bivalent miniprotein consisting of two2 independent elements, a b-hairpin peptide and a-helix3 peptide, tethered by four glycines 54 d2omoa1 not modelled 9.6 9 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PA3566-like 55 d1svya_ not modelled 9.1 10 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 56 c3c7tB_ not modelled 9.0 13 PDB header:hydrolase Chain: B: PDB Molecule:ecdysteroid-phosphate phosphatase; PDBTitle: crystal structure of the ecdysone phosphate phosphatase, eppase, from2 bombix mori in complex with tungstate 57 c2dnaA_ not modelled 9.0 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna 58 c3ll4B_ not modelled 9.0 27 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein ykr043c; PDBTitle: structure of the h13a mutant of ykr043c in complex with fructose-1,6-2 bisphosphate 59 d2axtb1 not modelled 8.9 20 Fold:Photosystem II antenna protein-like Superfamily:Photosystem II antenna protein-like Family:Photosystem II antenna protein-like 60 c2i9oA_ not modelled 8.8 22 PDB header:de novo protein Chain: A: PDB Molecule:mhb8a peptide; PDBTitle: design of bivalent miniprotein consisting of two2 independent elements, a b-hairpin peptide and a-helix3 peptide, tethered by eight glycines 61 c1vddC_ not modelled 8.6 39 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 62 c3eehA_ not modelled 8.5 13 PDB header:transferase Chain: A: PDB Molecule:putative light and redox sensing histidine kinase; PDBTitle: the crystal structure of the domain of the putative light and redox2 sensing histidine kinase from haloarcula marismortui 63 d2fh1a3 not modelled 8.4 13 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 64 c3d4iD_ not modelled 7.9 16 PDB header:hydrolase Chain: D: PDB Molecule:sts-2 protein; PDBTitle: crystal structure of the 2h-phosphatase domain of sts-2 65 d1jr3d2 not modelled 7.9 43 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 66 c3q5dA_ not modelled 7.9 5 PDB header:hydrolase Chain: A: PDB Molecule:atlastin-1; PDBTitle: crystal structure of human atlastin-1 (residues 1-447) bound to gdp,2 crystal form 1 67 d1oj4a2 not modelled 7.8 18 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE 68 d1cuoa_ not modelled 7.8 9 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 69 c1m1jA_ not modelled 7.7 21 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 70 d2axwa1 not modelled 7.5 14 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits 71 c3caxA_ not modelled 7.5 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pf0695; PDBTitle: crystal structure of uncharacterized protein pf0695 72 c2ikqA_ not modelled 7.4 15 PDB header:signaling protein, immune system Chain: A: PDB Molecule:suppressor of t-cell receptor signaling 1; PDBTitle: crystal structure of mouse sts-1 pgm domain in complex with phosphate 73 d1b2pa_ not modelled 7.4 25 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 74 d2ga9d1 not modelled 7.3 21 Fold:Poly(A) polymerase catalytic subunit-like Superfamily:Poly(A) polymerase catalytic subunit-like Family:Poxvirus poly(A) polymerase catalytic subunit-like 75 d1mbya_ not modelled 7.2 29 Fold:Polo-box domain Superfamily:Polo-box domain Family:Swapped Polo-box domain 76 c3knuD_ not modelled 7.1 21 PDB header:transferase Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum 77 d1x6va1 not modelled 7.1 24 Fold:PUA domain-like Superfamily:PUA domain-like Family:ATP sulfurylase N-terminal domain 78 c3quvB_ not modelled 7.0 29 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a trna-guanine-n1-methyltransferase from2 mycobacterium abscessus 79 d1p9pa_ not modelled 7.0 29 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 80 d1fzta_ not modelled 7.0 18 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 81 d2pp4a1 not modelled 6.9 17 Fold:TAFH domain-like Superfamily:TAFH domain-like Family:TAFH domain-like 82 d2cvba1 not modelled 6.8 33 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 83 d1uala_ not modelled 6.8 36 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 84 d1pvda1 not modelled 6.7 14 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 85 c2hpwA_ not modelled 6.6 26 PDB header:luminescent protein Chain: A: PDB Molecule:green fluorescent protein; PDBTitle: green fluorescent protein from clytia gregaria 86 c2fvnA_ not modelled 6.4 15 PDB header:cell adhesion Chain: A: PDB Molecule:protein afad; PDBTitle: the fibrillar tip complex of the afa/dr adhesins from2 pathogen e. coli displays synergistic binding to 5 1 and v3 3 integrins 87 c2kvcA_ not modelled 6.4 22 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 88 c2kpmA_ not modelled 6.3 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of uncharacterized protein from gene2 locus ne0665 of nitrosomonas europaea. northeast structural3 genomics target ner103a 89 c2c9wA_ not modelled 6.2 33 PDB header:transcription regulation Chain: A: PDB Molecule:suppressor of cytokine signaling 2; PDBTitle: crystal structure of socs-2 in complex with elongin-b and2 elongin-c at 1.9a resolution 90 c3ky7A_ not modelled 6.2 29 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252 91 d1sq5a_ not modelled 6.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 92 c2kpqA_ not modelled 6.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of agrobacterium tumefaciens protein atu1219:2 northeast structural genomics consortium target att14 93 d2fe0a1 not modelled 5.8 28 Fold:Smp-1-like Superfamily:Smp-1-like Family:Smp-1-like 94 d1udsa2 not modelled 5.7 30 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 95 c3p3dA_ not modelled 5.6 14 PDB header:nuclear protein Chain: A: PDB Molecule:nucleoporin 53; PDBTitle: crystal structure of the nup53 rrm domain from pichia guilliermondii 96 d2bw0a1 not modelled 5.6 14 Fold:FMT C-terminal domain-like Superfamily:FMT C-terminal domain-like Family:Post formyltransferase domain 97 d1npha2 not modelled 5.5 7 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 98 d1bifa2 not modelled 5.5 29 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain 99 d1vdda_ not modelled 5.4 39 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0