Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	I	I	K	R	S	V	A	I	I	A	I	L	F	S	P	L	S	T	A	S	N	L	T	S	Q	L	H	N	F	F	S	A	Q	L	A	G	V	S	D	E	V	R	V	S	I	R	T	A	P	N	L	L	P	P	C	E	Q	P
Secondary structure
SS confidence
Disorder		?	?	?												?	?	?	?	?	?																	?	?	?	?	?							?	?	?	?	?	?	?		?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	L	S	M	S	N	N	S	R	L	W	G	N	V	N	V	L	A	R	C	G	N	D	K	R	Y	L	Q	V	N	V	Q	A	T	G	N	Y	V	V	A	A	M	P	I	A	R	G	G	K	L	E	A	G	N	V	K	L	K	R	G
Secondary structure
SS confidence
Disorder		?			?	?	?	?	?	?	?	?	?																																	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	L	D	T	L	P	P	R	T	V	L	D	I	N	Q	L	V	D	A	I	S	L	R	D	L	S	P	D	Q	P	I	Q	L	T	Q	F	R	Q	A	W	R	V	K	A	G	Q	R	V	N	V	I	A	S	G	D	G	F	S	A	N
Secondary structure
SS confidence
Disorder								?									?		?		?	?			?	?	?	?	?	?	?	?	?	?			?	?	?																?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Sequence		A	E	G	Q	A	L	N	N	A	A	V	A	Q	N	A	R	V	R	M	V	S	G	Q	V	V	S	G	V	V	D	A	D	G	N	I	L	I	N	L
Secondary structure
SS confidence
Disorder							?	?	?	?	?	?	?	?							?		?	?									?	?						?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3frn chain A Region: 23 - 217 Aligned: 184 Modelled: 195 Confidence: 100.0% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flagellar protein flga; PDBTitle: crystal structure of flagellar protein flga from thermotoga maritima2 msb8 Phyre2 PDB 2zdr chain A domain 1 Region: 98 - 157 Aligned: 57 Modelled: 60 Confidence: 97.9% Identity: 21% Fold: beta-clip Superfamily: AFP III-like domain Family: AFP III-like domain Phyre2 PDB 1vli chain A domain 1 Region: 98 - 157 Aligned: 60 Modelled: 60 Confidence: 97.8% Identity: 15% Fold: beta-clip Superfamily: AFP III-like domain Family: AFP III-like domain Phyre2 PDB 3g8r chain A Region: 98 - 158 Aligned: 59 Modelled: 61 Confidence: 97.6% Identity: 22% PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472 Phyre2 PDB 1xuz chain A Region: 98 - 157 Aligned: 57 Modelled: 60 Confidence: 97.6% Identity: 21% PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol Phyre2 PDB 1vli chain A Region: 98 - 158 Aligned: 60 Modelled: 61 Confidence: 97.3% Identity: 17% PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution Phyre2 PDB 1ops chain A Region: 98 - 157 Aligned: 57 Modelled: 60 Confidence: 97.2% Identity: 19% Fold: beta-clip Superfamily: AFP III-like domain Family: AFP III-like domain Phyre2 PDB 1c8a chain A domain 2 Region: 98 - 157 Aligned: 57 Modelled: 60 Confidence: 97.0% Identity: 23% Fold: beta-clip Superfamily: AFP III-like domain Family: AFP III-like domain Phyre2 PDB 1wvo chain A Region: 98 - 156 Aligned: 56 Modelled: 59 Confidence: 96.7% Identity: 30% PDB header:transferase Chain: A: PDB Molecule:sialic acid synthase; PDBTitle: solution structure of rsgi ruh-029, an antifreeze protein2 like domain in human n-acetylneuraminic acid phosphate3 synthase gene. Phyre2 PDB 3nla chain A Region: 98 - 157 Aligned: 57 Modelled: 60 Confidence: 96.6% Identity: 19% Fold: beta-clip Superfamily: AFP III-like domain Family: AFP III-like domain Phyre2 PDB 1c8a chain A Region: 98 - 157 Aligned: 57 Modelled: 60 Confidence: 96.3% Identity: 23% PDB header:antifreeze protein Chain: A: PDB Molecule:protein (antifreeze protein type iii); PDBTitle: nmr structure of intramolecular dimer antifreeze protein2 rd3, 40 sa structures Phyre2 PDB 1ucs chain A Region: 98 - 157 Aligned: 57 Modelled: 60 Confidence: 86.7% Identity: 19% Fold: beta-clip Superfamily: AFP III-like domain Family: AFP III-like domain Phyre2 PDB 1hg7 chain A Region: 98 - 157 Aligned: 57 Modelled: 60 Confidence: 86.3% Identity: 19% Fold: beta-clip Superfamily: AFP III-like domain Family: AFP III-like domain Phyre2 PDB 3k3s chain G Region: 96 - 202 Aligned: 72 Modelled: 79 Confidence: 48.4% Identity: 19% PDB header:hydrolase Chain: G: PDB Molecule:altronate hydrolase; PDBTitle: crystal structure of altronate hydrolase (fragment 1-84) from shigella2 flexneri. Phyre2 PDB 1iq8 chain B Region: 145 - 198 Aligned: 52 Modelled: 54 Confidence: 44.7% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase; PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii Phyre2 PDB 1ylo chain A domain 1 Region: 165 - 211 Aligned: 47 Modelled: 47 Confidence: 43.8% Identity: 19% Fold: Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily: Aminopeptidase/glucanase lid domain Family: Aminopeptidase/glucanase lid domain Phyre2 PDB 1sv6 chain A Region: 109 - 180 Aligned: 72 Modelled: 72 Confidence: 40.1% Identity: 18% Fold: FAH Superfamily: FAH Family: FAH Phyre2 PDB 2eb5 chain D Region: 109 - 180 Aligned: 72 Modelled: 72 Confidence: 36.4% Identity: 14% PDB header:lyase Chain: D: PDB Molecule:2-oxo-hept-3-ene-1,7-dioate hydratase; PDBTitle: crystal structure of hpcg complexed with oxalate Phyre2 PDB 2q07 chain A domain 1 Region: 145 - 198 Aligned: 50 Modelled: 54 Confidence: 34.7% Identity: 12% Fold: PUA domain-like Superfamily: PUA domain-like Family: PUA domain Phyre2 PDB 4a1c chain S Region: 162 - 205 Aligned: 32 Modelled: 44 Confidence: 33.4% Identity: 19% PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. Phyre2 1 c3frnA_ 2 d2zdra1 3 d1vlia1 4 c3g8rA_ 5 c1xuzA_ 6 c1vliA_ 7 d1opsa_ 8 d1c8aa2 9 c1wvoA_ 10 d3nlaa_ 11 c1c8aA_ 12 d1ucsa_ 13 d1hg7a_ 14 c3k3sG_ 15 c1iq8B_ 16 d1yloa1 17 d1sv6a_ 18 c2eb5D_ 19 d2q07a1 20 c4a1cS_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3frnA_ 100.0 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flagellar protein flga; PDBTitle: crystal structure of flagellar protein flga from thermotoga maritima2 msb8 2 d2zdra1 97.9 21 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 3 d1vlia1 97.8 15 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 4 c3g8rA_ 97.6 22 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472 5 c1xuzA_ 97.6 21 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 6 c1vliA_ 97.3 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution 7 d1opsa_ 97.2 19 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 8 d1c8aa2 97.0 23 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 9 c1wvoA_ 96.7 30 PDB header:transferase Chain: A: PDB Molecule:sialic acid synthase; PDBTitle: solution structure of rsgi ruh-029, an antifreeze protein2 like domain in human n-acetylneuraminic acid phosphate3 synthase gene. 10 d3nlaa_ 96.6 19 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 11 c1c8aA_ 96.3 23 PDB header:antifreeze protein Chain: A: PDB Molecule:protein (antifreeze protein type iii); PDBTitle: nmr structure of intramolecular dimer antifreeze protein2 rd3, 40 sa structures 12 d1ucsa_ 86.7 19 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 13 d1hg7a_ 86.3 19 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 14 c3k3sG_ 48.4 19 PDB header:hydrolase Chain: G: PDB Molecule:altronate hydrolase; PDBTitle: crystal structure of altronate hydrolase (fragment 1-84) from shigella2 flexneri. 15 c1iq8B_ 44.7 19 PDB header:transferase Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase; PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii 16 d1yloa1 43.8 19 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 17 d1sv6a_ 40.1 18 Fold:FAH Superfamily:FAH Family:FAH 18 c2eb5D_ 36.4 14 PDB header:lyase Chain: D: PDB Molecule:2-oxo-hept-3-ene-1,7-dioate hydratase; PDBTitle: crystal structure of hpcg complexed with oxalate 19 d2q07a1 34.7 12 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 20 c4a1cS_ 33.4 19 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 21 c3l53F_ not modelled 32.2 16 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative fumarylacetoacetate isomerase/hydrolase; PDBTitle: crystal structure of a putative fumarylacetoacetate2 isomerase/hydrolase from oleispira antarctica 22 d2zjrr1 not modelled 31.3 23 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 23 d1vqot1 not modelled 30.1 23 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 24 c3iz5Y_ not modelled 29.5 19 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 25 c3f9xA_ not modelled 26.9 33 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd8; PDBTitle: structural insights into lysine multiple methylation by set2 domain methyltransferases, set8-y334f / h4-lys20me2 /3 adohcy 26 d2g46a1 not modelled 21.8 27 Fold:beta-clip Superfamily:SET domain Family:Viral histone H3 Lysine 27 Methyltransferase 27 d2f69a2 not modelled 21.1 7 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 28 c2w5zA_ not modelled 20.7 33 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase hrx; PDBTitle: ternary complex of the mixed lineage leukaemia (mll1) set2 domain with the cofactor product s-adenosylhomocysteine3 and histone peptide. 29 d1nr9a_ not modelled 20.0 13 Fold:FAH Superfamily:FAH Family:FAH 30 c3opeA_ not modelled 19.0 20 PDB header:transferase Chain: A: PDB Molecule:probable histone-lysine n-methyltransferase ash1l; PDBTitle: structural basis of auto-inhibitory mechanism of histone2 methyltransferase 31 c3n71A_ not modelled 18.7 13 PDB header:transcription Chain: A: PDB Molecule:histone lysine methyltransferase smyd1; PDBTitle: crystal structure of cardiac specific histone methyltransferase smyd1 32 d2grea1 not modelled 18.6 18 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 33 d1vhea1 not modelled 18.5 20 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 34 d1h3ia2 not modelled 17.8 7 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 35 d1pgsa1 not modelled 16.7 23 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:PHM/PNGase F Family:Glycosyl-asparaginase 36 c3cw1D_ not modelled 16.2 18 PDB header:splicing Chain: D: PDB Molecule:small nuclear ribonucleoprotein sm d3; PDBTitle: crystal structure of human spliceosomal u1 snrnp 37 c3bw1A_ not modelled 16.1 9 PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm3; PDBTitle: crystal structure of homomeric yeast lsm3 exhibiting novel octameric2 ring organisation 38 c3h6lA_ not modelled 15.9 13 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd2; PDBTitle: methyltransferase domain of human set domain-containing protein 2 39 c3ooiA_ not modelled 15.6 27 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-36 and h4 PDBTitle: crystal structure of human histone-lysine n-methyltransferase nsd1 set2 domain in complex with s-adenosyl-l-methionine 40 c1xqhE_ not modelled 13.8 7 PDB header:transferase Chain: E: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-4 PDBTitle: crystal structure of a ternary complex of the2 methyltransferase set9 (also known as set7/9) with a p533 peptide and sah 41 d1ml9a_ not modelled 13.7 27 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 42 c3s8pA_ not modelled 13.3 27 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv420h1; PDBTitle: crystal structure of the set domain of human histone-lysine n-2 methyltransferase suv420h1 in complex with s-adenosyl-l-methionine 43 d1u6ea2 not modelled 13.3 25 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 44 c2o8jC_ not modelled 13.0 20 PDB header:transferase Chain: C: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-9 PDBTitle: human euchromatic histone methyltransferase 2 45 c3pgwB_ not modelled 12.8 19 PDB header:splicing/dna/rna Chain: B: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp 46 d1d3bb_ not modelled 12.6 19 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 47 c1b34A_ not modelled 12.5 14 PDB header:rna binding protein Chain: A: PDB Molecule:protein (small nuclear ribonucleoprotein sm d1); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain 48 d1b34a_ not modelled 12.5 14 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 49 c3rq4A_ not modelled 12.4 20 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv420h2; PDBTitle: crystal structure of suppressor of variegation 4-20 homolog 2 50 c3bo5A_ not modelled 12.3 27 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setmar; PDBTitle: crystal structure of methyltransferase domain of human histone-lysine2 n-methyltransferase setmar 51 c2pn0D_ not modelled 12.1 21 PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea 52 d1vcpa_ not modelled 12.0 18 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 53 c3swnA_ not modelled 11.8 23 PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 54 d1cxla3 not modelled 11.8 20 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 55 c3swnC_ not modelled 11.5 14 PDB header:rna binding protein Chain: C: PDB Molecule:u6 snrna-associated sm-like protein lsm7; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 56 d2fwka1 not modelled 11.4 23 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 57 c3mekA_ not modelled 11.3 38 PDB header:transferase Chain: A: PDB Molecule:set and mynd domain-containing protein 3; PDBTitle: crystal structure of human histone-lysine n-2 methyltransferase smyd3 in complex with s-adenosyl-l-3 methionine 58 c2qpwA_ not modelled 11.2 40 PDB header:transcription Chain: A: PDB Molecule:pr domain zinc finger protein 2; PDBTitle: methyltransferase domain of human pr domain-containing2 protein 2 59 d1i4k1_ not modelled 11.0 23 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 60 c2r3aA_ not modelled 11.0 20 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv39h2; PDBTitle: methyltransferase domain of human suppressor of variegation2 3-9 homolog 2 61 c1mvhA_ not modelled 10.5 20 PDB header:transferase Chain: A: PDB Molecule:cryptic loci regulator 4; PDBTitle: structure of the set domain histone lysine2 methyltransferase clr4 62 d1mvha_ not modelled 10.5 20 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 63 d1d3ba_ not modelled 10.4 18 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 64 d1wyka_ not modelled 10.3 22 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 65 c3qwvA_ not modelled 10.2 31 PDB header:transferase Chain: A: PDB Molecule:set and mynd domain-containing protein 2; PDBTitle: crystal structure of histone lysine methyltransferase smyd2 in complex2 with the cofactor product adohcy 66 c3pgwQ_ not modelled 10.0 19 PDB header:splicing/dna/rna Chain: Q: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp 67 d1i8fa_ not modelled 9.8 10 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 68 c3rayA_ not modelled 9.7 33 PDB header:transcription Chain: A: PDB Molecule:pr domain-containing protein 11; PDBTitle: crystal structure of methyltransferase domain of human pr domain-2 containing protein 11 69 d1u0ma2 not modelled 9.5 22 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 70 c3ep0A_ not modelled 9.2 21 PDB header:transferase Chain: A: PDB Molecule:pr domain zinc finger protein 12; PDBTitle: methyltransferase domain of human pr domain-containing2 protein 12 71 d1mgqa_ not modelled 9.2 9 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 72 c1kxfA_ not modelled 9.1 22 PDB header:viral protein Chain: A: PDB Molecule:sindbis virus capsid protein; PDBTitle: sindbis virus capsid, (wild-type) residues 1-264,2 tetragonal crystal form (form ii) 73 d1ep5a_ not modelled 9.0 16 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 74 d1r3ea1 not modelled 8.7 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 75 c3cw1Z_ not modelled 8.7 14 PDB header:splicing Chain: Z: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of human spliceosomal u1 snrnp 76 c3cw1A_ not modelled 8.6 19 PDB header:splicing Chain: A: PDB Molecule:small nuclear ribonucleoprotein-associated proteins b and PDBTitle: crystal structure of human spliceosomal u1 snrnp 77 c3swnT_ not modelled 8.5 18 PDB header:rna binding protein Chain: T: PDB Molecule:u6 snrna-associated sm-like protein lsm6; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 78 d1svdm1 not modelled 8.5 12 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 79 d1qexa_ not modelled 8.5 15 Fold:gp9 Superfamily:gp9 Family:gp9 80 d1d3bl_ not modelled 8.2 19 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 81 d1y0ya1 not modelled 8.2 21 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 82 d1jbma_ not modelled 8.0 9 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 83 d1bxni_ not modelled 8.0 27 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 84 d2h2ja2 not modelled 7.9 31 Fold:beta-clip Superfamily:SET domain Family:RuBisCo LSMT catalytic domain 85 d1th7a1 not modelled 7.9 14 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 86 c3lazB_ not modelled 7.8 32 PDB header:lyase Chain: B: PDB Molecule:d-galactarate dehydratase; PDBTitle: the crystal structure of the n-terminal domain of d-2 galactarate dehydratase from escherichia coli cft073 87 d1bwvs_ not modelled 7.6 27 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 88 c3cw15_ not modelled 7.5 14 PDB header:splicing Chain: 5: PDB Molecule:small nuclear ribonucleoprotein g; PDB Fragment:residues 1-215; PDBTitle: crystal structure of human spliceosomal u1 snrnp 89 d3bmva3 not modelled 7.4 23 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 90 d1h641_ not modelled 7.4 14 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 91 c3izcs_ not modelled 7.3 16 PDB header:ribosome Chain: S: PDB Molecule:60s ribosomal protein rpl20 (l18ae); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 92 d1gtta1 not modelled 7.3 32 Fold:FAH Superfamily:FAH Family:FAH 93 d1lcka1 not modelled 7.1 11 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 94 c3bboW_ not modelled 7.0 29 PDB header:ribosome Chain: W: PDB Molecule:ribosomal protein l24; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 95 d1pama3 not modelled 7.0 21 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 96 d1gtta2 not modelled 6.8 26 Fold:FAH Superfamily:FAH Family:FAH 97 d1wh3a_ not modelled 6.8 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 98 d1sawa_ not modelled 6.5 14 Fold:FAH Superfamily:FAH Family:FAH 99 c2dxcG_ not modelled 6.4 20 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0