Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP33667
DateThu Jan 5 11:52:34 GMT 2012
Unique Job IDb7cf05eaaf6f5fbe

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3g5jA_
Top template information
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:putative atp/gtp binding protein;
PDBTitle: crystal structure of n-terminal domain of putative atp/gtp binding2 protein from clostridium difficile 630
Confidence and coverage
Confidence:100.0% Coverage: 36%
130 residues ( 36% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
309 residues ( 85%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQERHTEQDYRALLIADTPIIDVRAPIEFEHGAMPAAINLPLMNNDERAAVGTCYKQQGS
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Disorder  ??????






















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?
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   .........70.........80.........90.........100.........110.........120
Sequence  DAALALGHKLVAGEIRQQRMDAWRAACLQNPQGILCCARGGQRSHIVQSWLHAAGIDYPL
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   .........130.........140.........150.........160.........170.........180
Sequence  VEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQQQPNGVDLEGLARHRGSAFG
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   .........190.........200.........210.........220.........230.........240
Sequence  RTLQPQLSQASFENLLAAEMLKTDARQNLRLWVLEDESRMIGSNHLPECLRERMTQAAIA
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   .........250.........260.........270.........280.........290.........300
Sequence  VVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNE
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   .........310.........320.........330.........340.........350.........360
Sequence  LAARLDAALTTQLTTGSTDGHLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEW
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??????
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   ....
Sequence  VKAR
Secondary structure 

SS confidence 



Disorder 

??
Disorder confidence 



 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3g5j chain A

3D model

Region: 3 - 135
Aligned: 130
Modelled: 133
Confidence: 100.0%
Identity: 32%
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:putative atp/gtp binding protein;
PDBTitle: crystal structure of n-terminal domain of putative atp/gtp binding2 protein from clostridium difficile 630

Phyre2

PDB 3icr chain A

3D model

Region: 5 - 131
Aligned: 91
Modelled: 92
Confidence: 99.8%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a-disulfide reductase;
PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd

Phyre2

PDB 3tp9 chain B

3D model

Region: 4 - 130
Aligned: 91
Modelled: 92
Confidence: 99.8%
Identity: 30%
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein;
PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains

Phyre2

PDB 3i2v chain A

3D model

Region: 3 - 132
Aligned: 108
Modelled: 109
Confidence: 99.8%
Identity: 24%
PDB header:transferase
Chain: A: PDB Molecule:adenylyltransferase and sulfurtransferase mocs3;
PDBTitle: crystal structure of human mocs3 rhodanese-like domain

Phyre2

PDB 1tq1 chain A

3D model

Region: 1 - 130
Aligned: 106
Modelled: 107
Confidence: 99.8%
Identity: 28%
Fold: Rhodanese/Cell cycle control phosphatase
Superfamily: Rhodanese/Cell cycle control phosphatase
Family: Single-domain sulfurtransferase

Phyre2

PDB 3nta chain A

3D model

Region: 3 - 129
Aligned: 90
Modelled: 92
Confidence: 99.8%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase

Phyre2

PDB 3ilm chain D

3D model

Region: 5 - 130
Aligned: 91
Modelled: 92
Confidence: 99.8%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:alr3790 protein;
PDBTitle: crystal structure of the alr3790 protein from anabaena sp. northeast2 structural genomics consortium target nsr437h

Phyre2

PDB 3d1p chain A

3D model

Region: 5 - 130
Aligned: 103
Modelled: 104
Confidence: 99.8%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:putative thiosulfate sulfurtransferase yor285w;
PDBTitle: atomic resolution structure of uncharacterized protein from2 saccharomyces cerevisiae

Phyre2

PDB 3foj chain A

3D model

Region: 2 - 130
Aligned: 93
Modelled: 92
Confidence: 99.8%
Identity: 25%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of ssp1007 from staphylococcus2 saprophyticus subsp. saprophyticus. northeast structural3 genomics target syr101a.

Phyre2

PDB 1yt8 chain A domain 4

3D model

Region: 4 - 128
Aligned: 91
Modelled: 92
Confidence: 99.8%
Identity: 26%
Fold: Rhodanese/Cell cycle control phosphatase
Superfamily: Rhodanese/Cell cycle control phosphatase
Family: Multidomain sulfurtransferase (rhodanese)

Phyre2

PDB 1yt8 chain A

3D model

Region: 3 - 130
Aligned: 94
Modelled: 95
Confidence: 99.8%
Identity: 33%
PDB header:transferase
Chain: A: PDB Molecule:thiosulfate sulfurtransferase;
PDBTitle: crystal structure of thiosulfate sulfurtransferase from pseudomonas2 aeruginosa

Phyre2

PDB 2hhg chain A

3D model

Region: 3 - 130
Aligned: 100
Modelled: 101
Confidence: 99.8%
Identity: 26%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rpa3614;
PDBTitle: structure of protein of unknown function rpa3614, possible tyrosine2 phosphatase, from rhodopseudomonas palustris cga009

Phyre2

PDB 3gk5 chain A

3D model

Region: 3 - 130
Aligned: 91
Modelled: 93
Confidence: 99.8%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized rhodanese-related protein
PDBTitle: crystal structure of rhodanese-related protein (tvg0868615)2 from thermoplasma volcanium, northeast structural genomics3 consortium target tvr109a

Phyre2

PDB 3k9r chain A

3D model

Region: 5 - 130
Aligned: 91
Modelled: 92
Confidence: 99.8%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:alr3790 protein;
PDBTitle: x-ray structure of the rhodanese-like domain of the alr3790 protein2 from anabaena sp. northeast structural genomics consortium target3 nsr437c.

Phyre2

PDB 1e0c chain A

3D model

Region: 1 - 130
Aligned: 114
Modelled: 114
Confidence: 99.8%
Identity: 14%
PDB header:sulfurtransferase
Chain: A: PDB Molecule:sulfurtransferase;
PDBTitle: sulfurtransferase from azotobacter vinelandii

Phyre2

PDB 3eme chain A

3D model

Region: 2 - 130
Aligned: 93
Modelled: 92
Confidence: 99.7%
Identity: 30%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:rhodanese-like domain protein;
PDBTitle: crystal structure of rhodanese-like domain protein from2 staphylococcus aureus

Phyre2

PDB 1c25 chain A

3D model

Region: 3 - 131
Aligned: 101
Modelled: 101
Confidence: 99.7%
Identity: 20%
Fold: Rhodanese/Cell cycle control phosphatase
Superfamily: Rhodanese/Cell cycle control phosphatase
Family: Cell cycle control phosphatase, catalytic domain

Phyre2

PDB 2j6p chain F

3D model

Region: 3 - 131
Aligned: 100
Modelled: 101
Confidence: 99.7%
Identity: 20%
PDB header:oxidoreductase
Chain: F: PDB Molecule:sb(v)-as(v) reductase;
PDBTitle: structure of as-sb reductase from leishmania major

Phyre2

PDB 1yt8 chain A domain 1

3D model

Region: 2 - 130
Aligned: 95
Modelled: 96
Confidence: 99.7%
Identity: 32%
Fold: Rhodanese/Cell cycle control phosphatase
Superfamily: Rhodanese/Cell cycle control phosphatase
Family: Multidomain sulfurtransferase (rhodanese)

Phyre2

PDB 3f4a chain A

3D model

Region: 1 - 130
Aligned: 108
Modelled: 109
Confidence: 99.7%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein ygr203w;
PDBTitle: structure of ygr203w, a yeast protein tyrosine phosphatase2 of the rhodanese family

Phyre2

PDB 1rkb chain A

3D model

Region: 139 - 255
Aligned: 102
Modelled: 102
Confidence: 97.2%
Identity: 14%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2

PDB 1knq chain A

3D model

Region: 141 - 254
Aligned: 104
Modelled: 104
Confidence: 97.1%
Identity: 16%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Gluconate kinase

Phyre2

PDB 3nwj chain B

3D model

Region: 141 - 253
Aligned: 106
Modelled: 106
Confidence: 97.1%
Identity: 17%
PDB header:transferase
Chain: B: PDB Molecule:atsk2;
PDBTitle: crystal structure of shikimate kinase from arabidopsis thaliana2 (atsk2)

Phyre2

PDB 1via chain A

3D model

Region: 143 - 253
Aligned: 101
Modelled: 99
Confidence: 97.0%
Identity: 15%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Shikimate kinase (AroK)

Phyre2

PDB 3fdi chain A

3D model

Region: 144 - 363
Aligned: 147
Modelled: 137
Confidence: 97.0%
Identity: 14%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein from eubacterium2 ventriosum atcc 27560.

Phyre2

PDB 2pt5 chain D

3D model

Region: 145 - 253
Aligned: 103
Modelled: 101
Confidence: 97.0%
Identity: 19%
PDB header:transferase
Chain: D: PDB Molecule:shikimate kinase;
PDBTitle: crystal structure of shikimate kinase (aq_2177) from aquifex aeolicus2 vf5

Phyre2

PDB 3asy chain B

3D model

Region: 144 - 364
Aligned: 161
Modelled: 161
Confidence: 96.4%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:uridine kinase;
PDBTitle: ligand-free structure of uridine kinase from thermus thermophilus hb8

Phyre2
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c3g5jA_
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c3icrA_
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c3tp9B_
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c3i2vA_
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d1tq1a_
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c3ntaA_
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c3ilmD_
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c3d1pA_
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c3fojA_
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d1yt8a4
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c1yt8A_
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c2hhgA_
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c3gk5A_
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c3k9rA_
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c1e0cA_
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c3emeA_
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d1c25a_
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c2j6pF_
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d1yt8a1
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c3f4aA_
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d1rkba_
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d1knqa_
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c3nwjB_
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d1viaa_
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c3fdiA_
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c2pt5D_
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c3asyB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3g5jA_



100.0 32 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:putative atp/gtp binding protein;
PDBTitle: crystal structure of n-terminal domain of putative atp/gtp binding2 protein from clostridium difficile 630
2c3icrA_



99.8 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a-disulfide reductase;
PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd
3c3tp9B_



99.8 30 PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein;
PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains
4c3i2vA_



99.8 24 PDB header:transferase
Chain: A: PDB Molecule:adenylyltransferase and sulfurtransferase mocs3;
PDBTitle: crystal structure of human mocs3 rhodanese-like domain
5d1tq1a_



99.8 28 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Single-domain sulfurtransferase
6c3ntaA_



99.8 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase
7c3ilmD_



99.8 19 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:alr3790 protein;
PDBTitle: crystal structure of the alr3790 protein from anabaena sp. northeast2 structural genomics consortium target nsr437h
8c3d1pA_



99.8 22 PDB header:transferase
Chain: A: PDB Molecule:putative thiosulfate sulfurtransferase yor285w;
PDBTitle: atomic resolution structure of uncharacterized protein from2 saccharomyces cerevisiae
9c3fojA_



99.8 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of ssp1007 from staphylococcus2 saprophyticus subsp. saprophyticus. northeast structural3 genomics target syr101a.
10d1yt8a4



99.8 26 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
11c1yt8A_



99.8 33 PDB header:transferase
Chain: A: PDB Molecule:thiosulfate sulfurtransferase;
PDBTitle: crystal structure of thiosulfate sulfurtransferase from pseudomonas2 aeruginosa
12c2hhgA_



99.8 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rpa3614;
PDBTitle: structure of protein of unknown function rpa3614, possible tyrosine2 phosphatase, from rhodopseudomonas palustris cga009
13c3gk5A_



99.8 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized rhodanese-related protein
PDBTitle: crystal structure of rhodanese-related protein (tvg0868615)2 from thermoplasma volcanium, northeast structural genomics3 consortium target tvr109a
14c3k9rA_



99.8 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:alr3790 protein;
PDBTitle: x-ray structure of the rhodanese-like domain of the alr3790 protein2 from anabaena sp. northeast structural genomics consortium target3 nsr437c.
15c1e0cA_



99.8 14 PDB header:sulfurtransferase
Chain: A: PDB Molecule:sulfurtransferase;
PDBTitle: sulfurtransferase from azotobacter vinelandii
16c3emeA_



99.7 30 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:rhodanese-like domain protein;
PDBTitle: crystal structure of rhodanese-like domain protein from2 staphylococcus aureus
17d1c25a_



99.7 20 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Cell cycle control phosphatase, catalytic domain
18c2j6pF_



99.7 20 PDB header:oxidoreductase
Chain: F: PDB Molecule:sb(v)-as(v) reductase;
PDBTitle: structure of as-sb reductase from leishmania major
19d1yt8a1



99.7 32 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
20c3f4aA_



99.7 19 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein ygr203w;
PDBTitle: structure of ygr203w, a yeast protein tyrosine phosphatase2 of the rhodanese family
21d1yt8a2



not modelled 99.7 28 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
22c3aaxB_



not modelled 99.7 15 PDB header:transferase
Chain: B: PDB Molecule:putative thiosulfate sulfurtransferase;
PDBTitle: crystal structure of probable thiosulfate sulfurtransferase2 cysa3 (rv3117) from mycobacterium tuberculosis: monoclinic3 form
23d1gmxa_



not modelled 99.7 21 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Single-domain sulfurtransferase
24d1qxna_



not modelled 99.7 25 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Single-domain sulfurtransferase
25c3nhvE_



not modelled 99.7 19 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:bh2092 protein;
PDBTitle: crystal structure of bh2092 protein from bacillus halodurans,2 northeast structural genomics consortium target bhr228f
26d1yt8a3



not modelled 99.7 18 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
27d1e0ca1



not modelled 99.7 15 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
28c2fsxA_



not modelled 99.7 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cog0607: rhodanese-related sulfurtransferase;
PDBTitle: crystal structure of rv0390 from m. tuberculosis
29c2dcqA_



not modelled 99.7 15 PDB header:unknown function
Chain: A: PDB Molecule:putative protein at4g01050;
PDBTitle: fully automated nmr structure determination of the2 rhodanese homology domain at4g01050(175-295) from3 arabidopsis thaliana
30c3hzuA_



not modelled 99.7 12 PDB header:transferase
Chain: A: PDB Molecule:thiosulfate sulfurtransferase ssea;
PDBTitle: crystal structure of probable thiosulfate sulfurtransferase ssea2 (rhodanese) from mycobacterium tuberculosis
31c1urhA_



not modelled 99.7 15 PDB header:transferase
Chain: A: PDB Molecule:3-mercaptopyruvate sulfurtransferase;
PDBTitle: the "rhodanese" fold and catalytic mechanism of2 3-mercaptopyruvate sulfotransferases: crystal structure3 of ssea from escherichia coli
32c2k0zA_



not modelled 99.7 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein hp1203;
PDBTitle: solution nmr structure of protein hp1203 from helicobacter pylori2 26695. northeast structural genomics consortium (nesg) target3 pt1/ontario center for structural proteomics target hp1203
33d1ymka1



not modelled 99.7 27 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Cell cycle control phosphatase, catalytic domain
34c3ippA_



not modelled 99.7 18 PDB header:transferase
Chain: A: PDB Molecule:putative thiosulfate sulfurtransferase ynje;
PDBTitle: crystal structure of sulfur-free ynje
35d1uara2



not modelled 99.7 22 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
36c1uarA_



not modelled 99.6 12 PDB header:transferase
Chain: A: PDB Molecule:rhodanese;
PDBTitle: crystal structure of rhodanese from thermus thermophilus hb8
37c2uzqE_



not modelled 99.6 27 PDB header:hydrolase
Chain: E: PDB Molecule:m-phase inducer phosphatase 2;
PDBTitle: protein phosphatase, new crystal form
38d1t3ka_



not modelled 99.6 19 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Cell cycle control phosphatase, catalytic domain
39c2jtqA_



not modelled 99.6 30 PDB header:transferase
Chain: A: PDB Molecule:phage shock protein e;
PDBTitle: rhodanese from e.coli
40c3olhA_



not modelled 99.6 21 PDB header:transferase
Chain: A: PDB Molecule:3-mercaptopyruvate sulfurtransferase;
PDBTitle: human 3-mercaptopyruvate sulfurtransferase
41c1wv9B_



not modelled 99.6 29 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:rhodanese homolog tt1651;
PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8
42c2oucB_



not modelled 99.6 18 PDB header:hydrolase
Chain: B: PDB Molecule:dual specificity protein phosphatase 10;
PDBTitle: crystal structure of the map kinase binding domain of mkp5
43d1okga2



not modelled 99.6 18 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
44c1boiA_



not modelled 99.6 11 PDB header:transferase
Chain: A: PDB Molecule:rhodanese;
PDBTitle: n-terminally truncated rhodanese
45d1rhsa1



not modelled 99.6 11 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
46d1okga1



not modelled 99.6 15 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
47c2eg4B_



not modelled 99.6 22 PDB header:transferase
Chain: B: PDB Molecule:probable thiosulfate sulfurtransferase;
PDBTitle: crystal structure of probable thiosulfate sulfurtransferase
48d1urha1



not modelled 99.6 14 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
49d1rhsa2



not modelled 99.6 19 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
50d1e0ca2



not modelled 99.5 22 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
51d1hzma_



not modelled 99.5 16 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Cell cycle control phosphatase, catalytic domain
52c3op3A_



not modelled 99.5 22 PDB header:hydrolase
Chain: A: PDB Molecule:m-phase inducer phosphatase 3;
PDBTitle: crystal structure of cell division cycle 25c protein isoform a from2 homo sapiens
53d1uara1



not modelled 99.5 13 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
54c3r2uC_



not modelled 99.5 15 PDB header:hydrolase
Chain: C: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: 2.1 angstrom resolution crystal structure of metallo-beta-lactamase2 from staphylococcus aureus subsp. aureus col
55c2vswB_



not modelled 99.5 15 PDB header:hydrolase
Chain: B: PDB Molecule:dual specificity protein phosphatase 16;
PDBTitle: the structure of the rhodanese domain of the human dual2 specificity phosphatase 16
56c1okgA_



not modelled 99.4 17 PDB header:transferase
Chain: A: PDB Molecule:possible 3-mercaptopyruvate sulfurtransferase;
PDBTitle: 3-mercaptopyruvate sulfurtransferase from leishmania major
57d1urha2



not modelled 99.4 19 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
58d2gwfa1



not modelled 99.4 11 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Ubiquitin carboxyl-terminal hydrolase 8, USP8
59d1whba_



not modelled 99.4 12 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Ubiquitin carboxyl-terminal hydrolase 8, USP8
60d1rkba_



97.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
61d1knqa_



97.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Gluconate kinase
62c3nwjB_



97.1 17 PDB header:transferase
Chain: B: PDB Molecule:atsk2;
PDBTitle: crystal structure of shikimate kinase from arabidopsis thaliana2 (atsk2)
63d1viaa_



97.0 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Shikimate kinase (AroK)
64c3fdiA_



97.0 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein from eubacterium2 ventriosum atcc 27560.
65c2pt5D_



97.0 19 PDB header:transferase
Chain: D: PDB Molecule:shikimate kinase;
PDBTitle: crystal structure of shikimate kinase (aq_2177) from aquifex aeolicus2 vf5
66d1jbka_



not modelled 96.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
67d1e6ca_



not modelled 96.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Shikimate kinase (AroK)
68c3pvsA_



not modelled 96.8 17 PDB header:recombination
Chain: A: PDB Molecule:replication-associated recombination protein a;
PDBTitle: structure and biochemical activities of escherichia coli mgsa
69c2qz4A_



not modelled 96.8 13 PDB header:hydrolase
Chain: A: PDB Molecule:paraplegin;
PDBTitle: human paraplegin, aaa domain in complex with adp
70c2x8aA_



not modelled 96.8 19 PDB header:nuclear protein
Chain: A: PDB Molecule:nuclear valosin-containing protein-like;
PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain
71d1ywfa1



not modelled 96.7 16 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Mycobacterial PtpB-like
72d1kaga_



not modelled 96.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Shikimate kinase (AroK)
73d2iyva1



not modelled 96.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Shikimate kinase (AroK)
74d1khta_



not modelled 96.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
75c2if2C_



not modelled 96.5 19 PDB header:transferase
Chain: C: PDB Molecule:dephospho-coa kinase;
PDBTitle: crystal structure of the putative dephospho-coa kinase from aquifex2 aeolicus, northeast structural genomics target qr72.
76d1sxje2



not modelled 96.5 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
77c3h0kA_



not modelled 96.4 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0200 protein sso1041;
PDBTitle: crystal structure of an adenylated kinase related protein from2 sulfolobus solfataricus to 3.25a
78c3asyB_



96.4 20 PDB header:transferase
Chain: B: PDB Molecule:uridine kinase;
PDBTitle: ligand-free structure of uridine kinase from thermus thermophilus hb8
79d1ly1a_



not modelled 96.4 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
80c1ly1A_



not modelled 96.4 12 PDB header:transferase
Chain: A: PDB Molecule:polynucleotide kinase;
PDBTitle: structure and mechanism of t4 polynucleotide kinase
81c2cnwF_



not modelled 96.4 18 PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
82d1y63a_



not modelled 96.4 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
83c3t61A_



not modelled 96.3 17 PDB header:transferase
Chain: A: PDB Molecule:gluconokinase;
PDBTitle: crystal structure of a gluconokinase from sinorhizobium meliloti 1021
84c3gxgA_



not modelled 96.2 13 PDB header:hydrolase
Chain: A: PDB Molecule:putative phosphatase (duf442);
PDBTitle: crystal structure of putative phosphatase (duf442) (yp_001181608.1)2 from shewanella putrefaciens cn-32 at 1.60 a resolution
85c3exaD_



not modelled 96.2 16 PDB header:transferase
Chain: D: PDB Molecule:trna delta(2)-isopentenylpyrophosphate
PDBTitle: crystal structure of the full-length trna2 isopentenylpyrophosphate transferase (bh2366) from3 bacillus halodurans, northeast structural genomics4 consortium target bhr41.
86c3fozB_



not modelled 96.2 16 PDB header:transferase/rna
Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase;
PDBTitle: structure of e. coli isopentenyl-trna transferase in complex with e.2 coli trna(phe)
87d1ckea_



not modelled 96.2 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
88d1fnna2



not modelled 96.1 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
89d1zp6a1



not modelled 96.1 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Atu3015-like
90d2bdta1



not modelled 96.1 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Atu3015-like
91d1e94e_



not modelled 96.0 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
92c1zuiA_



not modelled 96.0 19 PDB header:transferase
Chain: A: PDB Molecule:shikimate kinase;
PDBTitle: structural basis for shikimate-binding specificity of helicobacter2 pylori shikimate kinase
93c2yvuA_



not modelled 96.0 12 PDB header:transferase
Chain: A: PDB Molecule:probable adenylyl-sulfate kinase;
PDBTitle: crystal structure of ape1195
94d1ki9a_



not modelled 95.9 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
95d1nksa_



not modelled 95.9 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
96c3flhC_



not modelled 95.9 18 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein lp_1913;
PDBTitle: crystal structure of lp_1913 protein from lactobacillus2 plantarum,northeast structural genomics consortium target3 lpr140b
97c3trfB_



not modelled 95.9 15 PDB header:transferase
Chain: B: PDB Molecule:shikimate kinase;
PDBTitle: structure of a shikimate kinase (arok) from coxiella burnetii
98c1xwiA_



not modelled 95.8 15 PDB header:protein transport
Chain: A: PDB Molecule:skd1 protein;
PDBTitle: crystal structure of vps4b
99c3hdtB_



not modelled 95.8 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative kinase;
PDBTitle: crystal structure of putative kinase from clostridium symbiosum atcc2 14940
100d1in4a2



not modelled 95.8 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
101c2chgB_



not modelled 95.7 13 PDB header:dna-binding protein
Chain: B: PDB Molecule:replication factor c small subunit;
PDBTitle: replication factor c domains 1 and 2
102c1in8A_



not modelled 95.7 26 PDB header:dna binding protein
Chain: A: PDB Molecule:holliday junction dna helicase ruvb;
PDBTitle: thermotoga maritima ruvb t158v
103c3a8tA_



not modelled 95.6 18 PDB header:transferase
Chain: A: PDB Molecule:adenylate isopentenyltransferase;
PDBTitle: plant adenylate isopentenyltransferase in complex with atp
104c3b9qA_



not modelled 95.6 25 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
105d1ixsb2



not modelled 95.6 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
106c3crqA_



not modelled 95.6 18 PDB header:transferase
Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate
PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel
107d1njfa_



not modelled 95.6 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
108c2vliB_



not modelled 95.6 19 PDB header:transferase
Chain: B: PDB Molecule:antibiotic resistance protein;
PDBTitle: structure of deinococcus radiodurans tunicamycin resistance2 protein
109c3d3qB_



not modelled 95.6 19 PDB header:transferase
Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate
PDBTitle: crystal structure of trna delta(2)-isopentenylpyrophosphate2 transferase (se0981) from staphylococcus epidermidis.3 northeast structural genomics consortium target ser100
110c3dm5A_



not modelled 95.6 24 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
111c3eihB_



not modelled 95.6 20 PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4;
PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas
112d2ce7a2



not modelled 95.5 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
113c1hqcB_



not modelled 95.5 24 PDB header:hydrolase
Chain: B: PDB Molecule:ruvb;
PDBTitle: structure of ruvb from thermus thermophilus hb8
114c1iqpF_



not modelled 95.5 13 PDB header:replication
Chain: F: PDB Molecule:rfcs;
PDBTitle: crystal structure of the clamp loader small subunit from2 pyrococcus furiosus
115d1yj5a2



not modelled 95.5 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
116c2oaq1_



not modelled 95.4 18 PDB header:hydrolase
Chain: 1: PDB Molecule:type ii secretion system protein;
PDBTitle: crystal structure of the archaeal secretion atpase gspe in complex2 with phosphate
117d1g6oa_



not modelled 95.4 32 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
118c2zamA_



not modelled 95.4 20 PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b;
PDBTitle: crystal structure of mouse skd1/vps4b apo-form
119c1sxjE_



not modelled 95.3 16 PDB header:replication
Chain: E: PDB Molecule:activator 1 40 kda subunit;
PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna)
120c1r6bX_



not modelled 95.3 18 PDB header:hydrolase
Chain: X: PDB Molecule:clpa protein;
PDBTitle: high resolution crystal structure of clpa

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0