Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AAK4
DateThu Jan 5 11:13:09 GMT 2012
Unique Job IDb6779a6594e97e4a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1ti2F_
Top template information
PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici
Confidence and coverage
Confidence:100.0% Coverage: 91%
160 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRIHVIKGVNISTATVCRQ
Secondary structure 



























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Disorder  ??


























?
?

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   .........70.........80.........90.........100.........110.........120
Sequence  CEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAGLN
Secondary structure 







































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Disorder 
















































???????????
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   .........130.........140.........150.........160.........170.....
Sequence  VRADKAEANKCDLCNHREDGPACMAACPTHALICVDRNKLEQLSAEKRRRTALMF
Secondary structure 























SS confidence 






















































Disorder  ????














































????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1ti2 chain F

3D model

Region: 1 - 175
Aligned: 160
Modelled: 160
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici

Phyre2

PDB 1kqf chain B

3D model

Region: 5 - 171
Aligned: 152
Modelled: 152
Confidence: 100.0%
Identity: 32%
PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli

Phyre2

PDB 2ivf chain B

3D model

Region: 2 - 170
Aligned: 154
Modelled: 154
Confidence: 100.0%
Identity: 32%
PDB header:oxidoreductase
Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum

Phyre2

PDB 1h0h chain B

3D model

Region: 2 - 175
Aligned: 159
Modelled: 159
Confidence: 100.0%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 2vpy chain B

3D model

Region: 1 - 170
Aligned: 153
Modelled: 154
Confidence: 100.0%
Identity: 33%
PDB header:oxidoreductase
Chain: B: PDB Molecule:nrfc protein;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)

Phyre2

PDB 1kqf chain B domain 1

3D model

Region: 5 - 171
Aligned: 152
Modelled: 152
Confidence: 100.0%
Identity: 31%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1vlf chain N domain 2

3D model

Region: 1 - 175
Aligned: 160
Modelled: 160
Confidence: 100.0%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1y5i chain B domain 1

3D model

Region: 1 - 169
Aligned: 154
Modelled: 154
Confidence: 100.0%
Identity: 26%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1c4c chain A

3D model

Region: 14 - 165
Aligned: 143
Modelled: 152
Confidence: 99.6%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum

Phyre2

PDB 2fug chain C

3D model

Region: 14 - 153
Aligned: 131
Modelled: 140
Confidence: 99.6%
Identity: 20%
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus

Phyre2

PDB 2fug chain 9 domain 1

3D model

Region: 84 - 160
Aligned: 71
Modelled: 77
Confidence: 99.5%
Identity: 31%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 2fug chain G

3D model

Region: 84 - 160
Aligned: 71
Modelled: 77
Confidence: 99.5%
Identity: 31%
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus

Phyre2

PDB 1xer chain A

3D model

Region: 73 - 156
Aligned: 74
Modelled: 84
Confidence: 99.5%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Archaeal ferredoxins

Phyre2

PDB 2zvs chain B

3D model

Region: 83 - 174
Aligned: 79
Modelled: 79
Confidence: 99.5%
Identity: 22%
PDB header:electron transport
Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl;
PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli

Phyre2

PDB 2c3y chain A

3D model

Region: 81 - 174
Aligned: 88
Modelled: 94
Confidence: 99.5%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus

Phyre2

PDB 1gth chain D

3D model

Region: 73 - 157
Aligned: 67
Modelled: 85
Confidence: 99.5%
Identity: 24%
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil

Phyre2

PDB 3c8y chain A domain 3

3D model

Region: 71 - 154
Aligned: 78
Modelled: 84
Confidence: 99.4%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1hfe chain L domain 2

3D model

Region: 71 - 155
Aligned: 68
Modelled: 85
Confidence: 99.4%
Identity: 28%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 2fug chain 3 domain 4

3D model

Region: 35 - 156
Aligned: 113
Modelled: 122
Confidence: 99.4%
Identity: 19%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1jb0 chain C

3D model

Region: 81 - 154
Aligned: 63
Modelled: 74
Confidence: 99.4%
Identity: 30%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: 7-Fe ferredoxin

Phyre2
1

c1ti2F_
2

c1kqfB_
3

c2ivfB_
4

d1h0hb_
5

c2vpyB_
6

d1kqfb1
7

d1vlfn2
8

d1y5ib1
9

c1c4cA_
10

c2fugC_
11

d2fug91
12

c2fugG_
13

d1xera_
14

c2zvsB_
15

c2c3yA_
16

c1gthD_
17

d3c8ya3
18

d1hfel2
19

d2fug34
20

d1jb0c_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1ti2F_



100.0 24 PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici
2c1kqfB_



100.0 32 PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli
3c2ivfB_



100.0 32 PDB header:oxidoreductase
Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
4d1h0hb_



100.0 23 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
5c2vpyB_



100.0 33 PDB header:oxidoreductase
Chain: B: PDB Molecule:nrfc protein;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
6d1kqfb1



100.0 31 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
7d1vlfn2



100.0 24 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
8d1y5ib1



100.0 26 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
9c1c4cA_



99.6 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
10c2fugC_



99.6 20 PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
11d2fug91



99.5 31 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
12c2fugG_



99.5 31 PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
13d1xera_



99.5 23 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Archaeal ferredoxins
14c2zvsB_



99.5 22 PDB header:electron transport
Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl;
PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli
15c2c3yA_



99.5 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus
16c1gthD_



99.5 24 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
17d3c8ya3



99.4 23 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
18d1hfel2



99.4 28 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
19d2fug34



99.4 19 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
20d1jb0c_



99.4 30 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
21d2c42a5



not modelled 99.4 22 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
22d1gtea5



not modelled 99.4 17 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
23c2gmhA_



not modelled 99.4 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone
24c2fgoA_



not modelled 99.4 24 PDB header:electron transport
Chain: A: PDB Molecule:ferredoxin;
PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa
25d1blua_



not modelled 99.4 19 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
26d1rgva_



not modelled 99.3 18 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
27d7fd1a_



not modelled 99.3 23 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
28c3gyxJ_



not modelled 99.3 30 PDB header:oxidoreductase
Chain: J: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
29c1hfeL_



not modelled 99.3 26 PDB header:hydrogenase
Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1)
PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans
30d1h98a_



not modelled 99.3 29 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
31d1bc6a_



not modelled 99.3 27 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
32c1gx7A_



not modelled 99.3 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit;
PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase
33d1dura_



not modelled 99.2 31 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
34d1jnrb_



not modelled 99.2 27 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
35d2fdna_



not modelled 99.2 33 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
36d1fcaa_



not modelled 99.2 36 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
37d2gmha3



not modelled 99.1 19 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:ETF-QO domain-like
38d1clfa_



not modelled 99.1 28 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
39d1iqza_



not modelled 99.1 22 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
40d1vjwa_



not modelled 99.0 25 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
41c2v2kB_



not modelled 99.0 31 PDB header:electron transport
Chain: B: PDB Molecule:ferredoxin;
PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis
42d1sj1a_



not modelled 98.9 24 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
43d3c7bb1



not modelled 98.8 29 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
44c1dwlA_



not modelled 98.8 22 PDB header:electron transfer
Chain: A: PDB Molecule:ferredoxin i;
PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation
45d1fxra_



not modelled 98.7 22 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
46c3c7bE_



not modelled 98.6 33 PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
47c2v4jE_



not modelled 98.6 20 PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
48c2b76N_



not modelled 98.4 19 PDB header:oxidoreductase
Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein;
PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
49c2v4jA_



not modelled 98.2 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
50c3c7bA_



not modelled 98.2 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
51d2bs2b1



not modelled 98.0 23 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
52d1kf6b1



not modelled 98.0 22 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
53c3bk7A_



not modelled 98.0 27 PDB header:hydrolyase/translation
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii
54c1nekB_



not modelled 97.9 17 PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound
55c2h89B_



not modelled 97.9 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:succinate dehydrogenase ip subunit;
PDBTitle: avian respiratory complex ii with malonate bound
56d1nekb1



not modelled 97.7 16 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
57c2bs2E_



not modelled 97.6 23 PDB header:oxidoreductase
Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b;
PDBTitle: quinol:fumarate reductase from wolinella succinogenes
58c3cf4A_



not modelled 97.1 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit;
PDBTitle: structure of the codh component of the m. barkeri acds complex
59d2v4jb1



not modelled 95.6 21 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
60c2vdcI_



not modelled 87.7 21 PDB header:oxidoreductase
Chain: I: PDB Molecule:glutamate synthase [nadph] small chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.
61d3c8ya2



not modelled 83.0 20 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
62d3c7ba1



not modelled 81.8 29 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
63d2v4ja1



not modelled 81.5 24 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
64d1gtea1



not modelled 57.1 25 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Dihydropyrimidine dehydrogenase, N-terminal domain
65d1fxda_



not modelled 46.0 24 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
66c3ktbD_



not modelled 38.5 22 PDB header:transcription regulator
Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor;
PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482
67c1g8jC_



not modelled 35.8 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:arsenite oxidase;
PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis
68c3m1yA_



not modelled 23.1 10 PDB header:hydrolase
Chain: A: PDB Molecule:phosphoserine phosphatase (serb);
PDBTitle: crystal structure of a phosphoserine phosphatase (serb) from2 helicobacter pylori
69d2r48a1



not modelled 22.2 15 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
70d2r4qa1



not modelled 17.6 24 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
71d1djqa3



not modelled 17.0 35 Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:N-terminal domain of adrenodoxin reductase-like
72c2kn0A_



not modelled 13.5 45 PDB header:apoptosis
Chain: A: PDB Molecule:fn14;
PDBTitle: solution nmr structure of xenopus fn14
73c2eqpA_



not modelled 12.9 45 PDB header:transcription
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily
PDBTitle: solution structure of the stn_tnfrsf12a_tnfr domain of2 tumor necrosis factor receptor superfamily member 12a3 precursor
74c2kyrA_



not modelled 12.8 27 PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
75c3kgkA_



not modelled 10.8 17 PDB header:chaperone
Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd;
PDBTitle: crystal structure of arsd
76c2kslA_



not modelled 10.7 40 PDB header:toxin
Chain: A: PDB Molecule:u1-agatoxin-ta1a;
PDBTitle: structure of the insecticidal toxin taitx-1
77d1l6ra_



not modelled 9.5 30 Fold:HAD-like
Superfamily:HAD-like
Family:Predicted hydrolases Cof
78d1dxga_



not modelled 7.0 31 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Desulforedoxin
79c3cw2M_



not modelled 6.8 27 PDB header:translation
Chain: M: PDB Molecule:translation initiation factor 2 subunit beta;
PDBTitle: crystal structure of the intact archaeal translation2 initiation factor 2 from sulfolobus solfataricus .
80c1ghqC_



not modelled 6.1 30 PDB header:immune system/viral protein receptor
Chain: C: PDB Molecule:cr2/cd121/c3d/epstein-barr virus receptor;
PDBTitle: cr2-c3d complex structure
81c1neeA_



not modelled 5.7 27 PDB header:translation
Chain: A: PDB Molecule:probable translation initiation factor 2 beta
PDBTitle: structure of archaeal translation factor aif2beta from2 methanobacterium thermoautrophicum
82c4a1aI_



not modelled 5.5 13 PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l13a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
83d1rutx1



not modelled 5.4 15 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
84c2xzn5_



not modelled 5.4 16 PDB header:ribosome
Chain: 5: PDB Molecule:ribosomal protein s26e containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0