Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	N	K	A	D	N	K	K	R	N	F	L	T	H	S	E	I	E	S	L	L	K	A	A	N	T	G	P	H	A	A	R	N	Y	C	L	T	L	L	C	F	I	H	G	F	R	A	S	E	I	C	R	L	R	I	S	D	I	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	K	A	K	C	I	Y	I	H	R	L	K	K	G	F	S	T	T	H	P	L	L	N	K	E	V	Q	A	L	K	N	W	L	S	I	R	T	S	Y	P	H	A	E	S	E	W	V	F	L	S	R	K	G	N	P	L	S	R	Q	Q
Secondary structure
SS confidence
Disorder																																							?		?	?															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	Y	H	I	I	S	T	S	G	G	N	A	G	L	S	L	E	I	H	P	H	M	L	R	H	S	C	G	F	A	L	A	N	M	G	I	D	T	R	L	I	Q	D	Y	L	G	H	R	N	I	R	H	T	V	W	Y	T	A	S	N
Secondary structure
SS confidence
Disorder																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Sequence		A	G	R	F	Y	G	I	W	D	R	A	R	G	R	Q	R	H	A	V	L
Secondary structure
SS confidence
Disorder																	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3nkh chain B Region: 8 - 190 Aligned: 183 Modelled: 178 Confidence: 100.0% Identity: 25% PDB header:recombination Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus Phyre2 PDB 1a0p chain A domain 2 Region: 11 - 189 Aligned: 177 Modelled: 179 Confidence: 100.0% Identity: 20% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1aih chain A Region: 7 - 198 Aligned: 169 Modelled: 171 Confidence: 99.9% Identity: 18% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1f44 chain A domain 2 Region: 8 - 189 Aligned: 182 Modelled: 182 Confidence: 99.9% Identity: 13% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1ae9 chain A Region: 10 - 180 Aligned: 168 Modelled: 171 Confidence: 99.9% Identity: 14% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1z1b chain A Region: 1 - 178 Aligned: 174 Modelled: 178 Confidence: 99.9% Identity: 18% PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Phyre2 PDB 1a0p chain A Region: 1 - 189 Aligned: 187 Modelled: 189 Confidence: 99.9% Identity: 19% PDB header:dna recombination Chain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd Phyre2 PDB 1p7d chain A Region: 1 - 182 Aligned: 179 Modelled: 182 Confidence: 99.9% Identity: 13% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1ma7 chain A Region: 2 - 189 Aligned: 188 Modelled: 188 Confidence: 99.8% Identity: 15% PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 Phyre2 PDB 1crx chain A Region: 3 - 189 Aligned: 187 Modelled: 187 Confidence: 99.8% Identity: 12% PDB header:replication/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: cre recombinase/dna complex reaction intermediate i Phyre2 PDB 5crx chain B domain 2 Region: 8 - 166 Aligned: 159 Modelled: 159 Confidence: 99.8% Identity: 15% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 2a3v chain A Region: 2 - 180 Aligned: 174 Modelled: 179 Confidence: 99.8% Identity: 28% PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination Phyre2 PDB 2v6e chain B Region: 15 - 176 Aligned: 162 Modelled: 162 Confidence: 97.6% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:protelemorase; PDBTitle: protelomerase telk complexed with substrate dna Phyre2 PDB 2f4q chain A Region: 35 - 179 Aligned: 139 Modelled: 142 Confidence: 95.0% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:type i topoisomerase, putative; PDBTitle: crystal structure of deinococcus radiodurans topoisomerase ib Phyre2 PDB 2h7f chain X Region: 35 - 178 Aligned: 129 Modelled: 144 Confidence: 89.4% Identity: 20% PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna Phyre2 PDB 1rr8 chain C domain 1 Region: 35 - 153 Aligned: 106 Modelled: 119 Confidence: 53.4% Identity: 19% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Eukaryotic DNA topoisomerase I, catalytic core Phyre2 PDB 2b9s chain A Region: 35 - 153 Aligned: 106 Modelled: 119 Confidence: 52.0% Identity: 14% PDB header:isomerase/dna Chain: A: PDB Molecule:topoisomerase i-like protein; PDBTitle: crystal structure of heterodimeric l. donovani2 topoisomerase i-vanadate-dna complex Phyre2 PDB 1khd chain A domain 1 Region: 9 - 54 Aligned: 46 Modelled: 46 Confidence: 49.2% Identity: 24% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 1k4t chain A domain 2 Region: 35 - 153 Aligned: 106 Modelled: 119 Confidence: 44.2% Identity: 15% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Eukaryotic DNA topoisomerase I, catalytic core Phyre2 PDB 1uou chain A domain 1 Region: 7 - 55 Aligned: 49 Modelled: 49 Confidence: 42.0% Identity: 16% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 1 c3nkhB_ 2 d1a0pa2 3 d1aiha_ 4 d1f44a2 5 d1ae9a_ 6 c1z1bA_ 7 c1a0pA_ 8 d1p7da_ 9 c1ma7A_ 10 c1crxA_ 11 d5crxb2 12 c2a3vA_ 13 c2v6eB_ 14 c2f4qA_ 15 c2h7fX_ 16 d1rr8c1 17 c2b9sA_ 18 d1khda1 19 d1k4ta2 20 d1uoua1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3nkhB_ 100.0 25 PDB header:recombination Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus 2 d1a0pa2 100.0 20 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 3 d1aiha_ 99.9 18 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 4 d1f44a2 99.9 13 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 5 d1ae9a_ 99.9 14 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 6 c1z1bA_ 99.9 18 PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site 7 c1a0pA_ 99.9 19 PDB header:dna recombination Chain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd 8 d1p7da_ 99.9 13 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 9 c1ma7A_ 99.8 15 PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 10 c1crxA_ 99.8 12 PDB header:replication/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: cre recombinase/dna complex reaction intermediate i 11 d5crxb2 99.8 15 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 12 c2a3vA_ 99.8 28 PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination 13 c2v6eB_ 97.6 13 PDB header:hydrolase Chain: B: PDB Molecule:protelemorase; PDBTitle: protelomerase telk complexed with substrate dna 14 c2f4qA_ 95.0 15 PDB header:isomerase Chain: A: PDB Molecule:type i topoisomerase, putative; PDBTitle: crystal structure of deinococcus radiodurans topoisomerase ib 15 c2h7fX_ 89.4 20 PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna 16 d1rr8c1 53.4 19 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Eukaryotic DNA topoisomerase I, catalytic core 17 c2b9sA_ 52.0 14 PDB header:isomerase/dna Chain: A: PDB Molecule:topoisomerase i-like protein; PDBTitle: crystal structure of heterodimeric l. donovani2 topoisomerase i-vanadate-dna complex 18 d1khda1 49.2 24 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 19 d1k4ta2 44.2 15 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Eukaryotic DNA topoisomerase I, catalytic core 20 d1uoua1 42.0 16 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 21 d2tpta1 not modelled 41.9 12 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 22 d1v8ga1 not modelled 40.7 20 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 23 d2cqra1 not modelled 32.8 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 24 d1brwa1 not modelled 29.4 20 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 25 d1a41a_ not modelled 29.2 20 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Eukaryotic DNA topoisomerase I, catalytic core 26 d1f43a_ not modelled 28.4 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 27 c2j0fC_ not modelled 24.8 16 PDB header:transferase Chain: C: PDB Molecule:thymidine phosphorylase; PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design 28 c2kt0A_ not modelled 23.4 11 PDB header:transcription regulation Chain: A: PDB Molecule:homeobox protein nanog; PDBTitle: solution structure of human stem cell transcription factor nanog2 homeodomain fragment 29 c3h5qA_ not modelled 22.6 14 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus 30 c2dsjA_ not modelled 20.7 12 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 31 c1otpA_ not modelled 20.5 16 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 32 d1o17a1 not modelled 20.3 24 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 33 d1vnda_ not modelled 20.1 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 34 c1brwB_ not modelled 18.1 18 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 35 d1pufa_ not modelled 17.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 36 c2dmsA_ not modelled 17.2 8 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein otx2; PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2 37 c2bpqB_ not modelled 17.1 14 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure) 38 d1trra_ not modelled 16.8 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Trp repressor, TrpR 39 d1hdpa_ not modelled 15.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 40 c1a31A_ not modelled 15.7 18 PDB header:isomerase/dna Chain: A: PDB Molecule:protein (topoisomerase i); PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex 41 c2l9rA_ not modelled 15.3 7 PDB header:transcription Chain: A: PDB Molecule:homeobox protein nkx-3.1; PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a 42 c1vquB_ not modelled 14.9 16 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution 43 d1jhga_ not modelled 14.8 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Trp repressor, TrpR 44 d1xc5a1 not modelled 14.6 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 45 c2djnA_ not modelled 14.5 13 PDB header:transcription Chain: A: PDB Molecule:homeobox protein dlx-5; PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein dlx-5 46 d1fjlb_ not modelled 13.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 47 c2dmuA_ not modelled 13.3 13 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein goosecoid; PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid 48 c1khdD_ not modelled 12.9 23 PDB header:transferase Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum) 49 d1ocpa_ not modelled 12.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 50 c2dmtA_ not modelled 12.4 18 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein barh-like 1; PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1 51 c1v8gB_ not modelled 12.3 20 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8 52 c2da3A_ not modelled 11.6 19 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the third homeobox domain of at-2 binding transcription factor 1 (atbf1) 53 d1ig7a_ not modelled 10.3 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 54 d1cc5a_ not modelled 10.1 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 55 d1ztra1 not modelled 9.9 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 56 d1fjla_ not modelled 9.8 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 57 d2elca1 not modelled 9.8 22 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 58 d1gt0c1 not modelled 9.6 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 59 c3mzyA_ not modelled 9.3 13 PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a 60 d2e1oa1 not modelled 9.3 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 61 c2f9jP_ not modelled 9.2 14 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 62 c1o17A_ not modelled 9.0 25 PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) 63 d1gefa_ not modelled 9.0 13 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 64 d1bw5a_ not modelled 8.8 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 65 c2wj0B_ not modelled 8.5 25 PDB header:hydrolase/dna Chain: B: PDB Molecule:archaeal hjc; PDBTitle: crystal structures of holliday junction resolvases from2 archaeoglobus fulgidus bound to dna substrate 66 c2juhA_ not modelled 8.5 11 PDB header:nuclear protein Chain: A: PDB Molecule:telomere binding protein tbp1; PDBTitle: solution structure of dna binding domain of ngtrf1 67 c2kq6A_ not modelled 8.4 17 PDB header:transport protein Chain: A: PDB Molecule:polycystin-2; PDBTitle: the structure of the ef-hand domain of polycystin-2 suggests a2 mechanism for ca2+-dependent regulation of polycystin-2 channel3 activity 68 c2dmqA_ not modelled 8.4 10 PDB header:dna binding protein Chain: A: PDB Molecule:lim/homeobox protein lhx9; PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9 69 c2da2A_ not modelled 8.1 10 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the second homeobox domain of at-2 binding transcription factor 1 (atbf1) 70 c3hugA_ not modelled 8.1 11 PDB header:transcription/membrane protein Chain: A: PDB Molecule:rna polymerase sigma factor; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl 71 d1ahdp_ not modelled 7.8 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 72 d1sf9a_ not modelled 7.8 10 Fold:SH3-like barrel Superfamily:Hypothetical protein YfhH Family:Hypothetical protein YfhH 73 c3hxxA_ not modelled 7.4 26 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp 74 d1octc1 not modelled 7.4 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 75 c3a01A_ not modelled 7.1 15 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeodomain-containing protein; PDBTitle: crystal structure of aristaless and clawless homeodomains bound to dna 76 d1jhfa1 not modelled 7.0 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 77 d1yz8p1 not modelled 6.9 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 78 d1h9xa1 not modelled 6.8 11 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 79 d2ecba1 not modelled 6.7 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 80 d1a56a_ not modelled 6.7 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 81 d1b8ia_ not modelled 6.6 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 82 c2x48B_ not modelled 6.4 33 PDB header:viral protein Chain: B: PDB Molecule:cag38821; PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1 83 d1kx7a_ not modelled 6.4 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 84 c3sohB_ not modelled 6.4 10 PDB header:motor protein Chain: B: PDB Molecule:flagellar motor switch protein flig; PDBTitle: architecture of the flagellar rotor 85 d2hddb_ not modelled 6.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 86 d2cuea1 not modelled 6.1 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 87 c2kleA_ not modelled 6.0 19 PDB header:membrane protein Chain: A: PDB Molecule:polycystin-2; PDBTitle: isic refined solution structure of the calcium binding2 domain of the c-terminal cytosolic domain of polycystin-2 88 d1zq3p1 not modelled 5.9 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 89 c2l4dA_ not modelled 5.9 20 PDB header:electron transport Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c; PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida 90 c2o8xA_ not modelled 5.9 8 PDB header:transcription Chain: A: PDB Molecule:probable rna polymerase sigma-c factor; PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc 91 c3h0gE_ not modelled 5.9 16 PDB header:transcription Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 92 c2zonG_ not modelled 5.8 0 PDB header:oxidoreductase/electron transport Chain: G: PDB Molecule:cytochrome c551; PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c 93 c2d0sA_ not modelled 5.5 15 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus 94 d1au7a1 not modelled 5.5 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 95 c3hefB_ not modelled 5.5 13 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 96 d1itya_ not modelled 5.4 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:DNA-binding domain of telomeric protein 97 d1ob8a_ not modelled 5.3 13 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 98 d1fcdc1 not modelled 5.1 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 99 d2craa1 not modelled 5.1 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0