Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP23893
DateThu Jan 5 11:40:26 GMT 2012
Unique Job IDb343b27f4eb3541e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2gsaa_
Top template information
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
Confidence and coverage
Confidence:100.0% Coverage:100%
425 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWG
Secondary structure 
SS confidence 
Disorder  ??
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  PMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATM
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  SAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKYTLTCT
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  YNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPEFLPGLRALCDEFGALLIIDEVM
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  TGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSG
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  NPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFT
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  DAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAFEAGFMSVAHSMEDINNTIDAAR
Secondary structure 
SS confidence 
Disorder 
???
????
Disorder confidence 
 
   ......
Sequence  RVFAKL
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2gsa chain A

3D model

Region: 1 - 426
Aligned: 425
Modelled: 426
Confidence: 100.0%
Identity: 56%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 3bs8 chain A

3D model

Region: 1 - 426
Aligned: 424
Modelled: 426
Confidence: 100.0%
Identity: 56%
PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis

Phyre2

PDB 2e7u chain A

3D model

Region: 2 - 423
Aligned: 420
Modelled: 422
Confidence: 100.0%
Identity: 54%
PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from2 thermus thermophilus hb8

Phyre2

PDB 3l44 chain A

3D model

Region: 1 - 426
Aligned: 417
Modelled: 426
Confidence: 100.0%
Identity: 47%
PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase 1;
PDBTitle: crystal structure of bacillus anthracis heml-1, glutamate semialdehyde2 aminotransferase

Phyre2

PDB 2zsm chain A

3D model

Region: 2 - 426
Aligned: 416
Modelled: 422
Confidence: 100.0%
Identity: 45%
PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-2 aminomutase from aeropyrum pernix, hexagonal form

Phyre2

PDB 3n5m chain D

3D model

Region: 1 - 426
Aligned: 415
Modelled: 426
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: D: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystals structure of a bacillus anthracis aminotransferase

Phyre2

PDB 3hmu chain A

3D model

Region: 1 - 426
Aligned: 418
Modelled: 426
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi

Phyre2

PDB 3fcr chain A

3D model

Region: 3 - 425
Aligned: 419
Modelled: 423
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution

Phyre2

PDB 3oks chain B

3D model

Region: 2 - 424
Aligned: 403
Modelled: 423
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: B: PDB Molecule:4-aminobutyrate transaminase;
PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis

Phyre2

PDB 1ohw chain A

3D model

Region: 2 - 425
Aligned: 392
Modelled: 410
Confidence: 100.0%
Identity: 19%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 3i5t chain B

3D model

Region: 7 - 426
Aligned: 406
Modelled: 420
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131

Phyre2

PDB 1zod chain A domain 1

3D model

Region: 1 - 425
Aligned: 408
Modelled: 425
Confidence: 100.0%
Identity: 24%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 3lv2 chain A

3D model

Region: 4 - 426
Aligned: 396
Modelled: 409
Confidence: 100.0%
Identity: 26%
PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin

Phyre2

PDB 1sff chain A

3D model

Region: 2 - 426
Aligned: 407
Modelled: 425
Confidence: 100.0%
Identity: 29%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 3bv0 chain A

3D model

Region: 4 - 426
Aligned: 389
Modelled: 396
Confidence: 100.0%
Identity: 25%
PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 mycobacterium tuberculosis

Phyre2

PDB 2cy8 chain A

3D model

Region: 1 - 426
Aligned: 377
Modelled: 386
Confidence: 100.0%
Identity: 33%
PDB header:transferase
Chain: A: PDB Molecule:d-phenylglycine aminotransferase;
PDBTitle: crystal structure of d-phenylglycine aminotransferase (d-phgat) from2 pseudomonas strutzeri st-201

Phyre2

PDB 1s0a chain A

3D model

Region: 4 - 425
Aligned: 402
Modelled: 408
Confidence: 100.0%
Identity: 23%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 3a8u chain X

3D model

Region: 19 - 426
Aligned: 398
Modelled: 408
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase;
PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase

Phyre2

PDB 3dxv chain A

3D model

Region: 5 - 426
Aligned: 398
Modelled: 422
Confidence: 100.0%
Identity: 25%
PDB header:isomerase
Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase;
PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae

Phyre2

PDB 2cjd chain A

3D model

Region: 31 - 426
Aligned: 380
Modelled: 382
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:l-lysine-epsilon aminotransferase;
PDBTitle: lysine aminotransferase from m. tuberculosis in external2 aldimine form

Phyre2
1
d2gsaa_
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c3bs8A_
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c2e7uA_
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c3l44A_
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c2zsmA_
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c3n5mD_
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c3hmuA_
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c3fcrA_
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c3oksB_
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d1ohwa_
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c3i5tB_
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d1zoda1
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c3lv2A_
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d1sffa_
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c3bv0A_
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c2cy8A_
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d1s0aa_
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c3a8uX_
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c3dxvA_
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c2cjdA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2gsaa_
100.0 56 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
2c3bs8A_
100.0 56 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis
3c2e7uA_
100.0 54 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from2 thermus thermophilus hb8
4c3l44A_
100.0 47 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase 1;
PDBTitle: crystal structure of bacillus anthracis heml-1, glutamate semialdehyde2 aminotransferase
5c2zsmA_
100.0 45 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-2 aminomutase from aeropyrum pernix, hexagonal form
6c3n5mD_
100.0 21 PDB header:transferase
Chain: D: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystals structure of a bacillus anthracis aminotransferase
7c3hmuA_
100.0 17 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi
8c3fcrA_
100.0 21 PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution
9c3oksB_
100.0 24 PDB header:transferase
Chain: B: PDB Molecule:4-aminobutyrate transaminase;
PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis
10d1ohwa_
100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
11c3i5tB_
100.0 20 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131
12d1zoda1
100.0 24 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
13c3lv2A_
100.0 26 PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin
14d1sffa_
100.0 29 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
15c3bv0A_
100.0 25 PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 mycobacterium tuberculosis
16c2cy8A_
100.0 33 PDB header:transferase
Chain: A: PDB Molecule:d-phenylglycine aminotransferase;
PDBTitle: crystal structure of d-phenylglycine aminotransferase (d-phgat) from2 pseudomonas strutzeri st-201
17d1s0aa_
100.0 23 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
18c3a8uX_
100.0 23 PDB header:transferase
Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase;
PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase
19c3dxvA_
100.0 25 PDB header:isomerase
Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase;
PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae
20c2cjdA_
100.0 23 PDB header:transferase
Chain: A: PDB Molecule:l-lysine-epsilon aminotransferase;
PDBTitle: lysine aminotransferase from m. tuberculosis in external2 aldimine form
21d2byla1
not modelled 100.0 26 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
22c1oatB_
not modelled 100.0 26 PDB header:aminotransferase
Chain: B: PDB Molecule:ornithine aminotransferase;
PDBTitle: ornithine aminotransferase
23c2eo5A_
not modelled 100.0 29 PDB header:transferase
Chain: A: PDB Molecule:419aa long hypothetical aminotransferase;
PDBTitle: crystal structure of 4-aminobutyrate aminotransferase from sulfolobus2 tokodaii strain7
24c3nuiA_
not modelled 100.0 20 PDB header:transferase
Chain: A: PDB Molecule:pyruvate transaminase;
PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17
25d2cfba1
not modelled 100.0 56 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
26c3dodA_
not modelled 100.0 22 PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis
27c3ruyB_
not modelled 100.0 25 PDB header:transferase
Chain: B: PDB Molecule:ornithine aminotransferase;
PDBTitle: crystal structure of the ornithine-oxo acid transaminase rocd from2 bacillus anthracis
28c2pb2B_
not modelled 100.0 27 PDB header:transferase
Chain: B: PDB Molecule:acetylornithine/succinyldiaminopimelate aminotransferase;
PDBTitle: structure of biosynthetic n-acetylornithine aminotransferase from2 salmonella typhimurium: studies on substrate specificity and3 inhibitor binding
29d1z7da1
not modelled 100.0 23 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
30d1vefa1
not modelled 100.0 31 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
31c2ordA_
not modelled 100.0 27 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution
32c1z7dE_
not modelled 100.0 24 PDB header:transferase
Chain: E: PDB Molecule:ornithine aminotransferase;
PDBTitle: ornithine aminotransferase py00104 from plasmodium yoelii
33c3nx3A_
not modelled 100.0 24 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (argd) from2 campylobacter jejuni
34c3i4jC_
not modelled 100.0 23 PDB header:transferase
Chain: C: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans
35c2eh6A_
not modelled 100.0 29 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase from aquifex2 aeolicus vf5
36c2w8wA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
37d1fc4a_
not modelled 100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
38c3a2bA_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
39d1bs0a_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
40c3tqxA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase;
PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
41d2bwna1
not modelled 100.0 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
42c3hqtB_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
43c3pj0D_
not modelled 100.0 14 PDB header:lyase
Chain: D: PDB Molecule:lmo0305 protein;
PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
44d1m6sa_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
45c3lwsF_
not modelled 100.0 14 PDB header:lyase
Chain: F: PDB Molecule:aromatic amino acid beta-eliminating
PDBTitle: crystal structure of putative aromatic amino acid beta-2 eliminating lyase/threonine aldolase. (yp_001813866.1) from3 exiguobacterium sp. 255-15 at 2.00 a resolution
46c3ke3A_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase;
PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution
47d1wsta1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
48d1svva_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
49d1c7ga_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
50d1c7na_
not modelled 100.0 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
51d1v72a1
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
52d1tpla_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
53d1xi9a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
54d2v1pa1
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
55d1x0ma1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
56d1qz9a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
57c3b46B_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
58d1o4sa_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
59d1b5pa_
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
60c3dzzB_
not modelled 100.0 11 PDB header:transferase
Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase;
PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
61c2zc0C_
not modelled 100.0 17 PDB header:transferase
Chain: C: PDB Molecule:alanine glyoxylate transaminase;
PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase
62c2x5dD_
not modelled 100.0 14 PDB header:transferase
Chain: D: PDB Molecule:probable aminotransferase;
PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa
63d1j32a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
64c3jtxB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
65c3op7A_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution
66c3l8aB_
not modelled 100.0 11 PDB header:lyase
Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase;
PDBTitle: crystal structure of metc from streptococcus mutans
67d1lc5a_
not modelled 100.0 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
68d1w7la_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
69c3kaxB_
not modelled 100.0 10 PDB header:lyase
Chain: B: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
70c2douA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase;
PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8
71d1wyub1
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
72d1ax4a_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
73c3e9kA_
not modelled 100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
74d1v2da_
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
75c3e2yB_
not modelled 100.0 13 PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine
76d2r5ea1
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
77c2o0rA_
not modelled 99.9 14 PDB header:transferase
Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase);
PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis
78c3if2B_
not modelled 99.9 13 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution
79c3f9tB_
not modelled 99.9 16 PDB header:lyase
Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna;
PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
80c2hzpA_
not modelled 99.9 14 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
81c1d2fB_
not modelled 99.9 11 PDB header:transferase
Chain: B: PDB Molecule:maly protein;
PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression
82c3fdbA_
not modelled 99.9 14 PDB header:transferase
Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase;
PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution
83d1d2fa_
not modelled 99.9 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
84c3eibB_
not modelled 99.9 11 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana
85c3ftbA_
not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum
86d1vp4a_
not modelled 99.9 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
87c1ynuA_
not modelled 99.9 14 PDB header:lyase
Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase;
PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine
88c3qguB_
not modelled 99.9 13 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii
89d1u08a_
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
90c3getA_
not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution
91c3h14A_
not modelled 99.9 16 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
92c3pdxA_
not modelled 99.9 11 PDB header:transferase
Chain: A: PDB Molecule:tyrosine aminotransferase;
PDBTitle: crystal structural of mouse tyrosine aminotransferase
93c3mafB_
not modelled 99.9 14 PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)
94c3nraA_
not modelled 99.9 16 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution
95c3dc1A_
not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase
PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate
96c3ly1C_
not modelled 99.9 16 PDB header:transferase
Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution
97d2csta_
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
98d1iaya_
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
99c3dydB_
not modelled 99.9 9 PDB header:transferase
Chain: B: PDB Molecule:tyrosine aminotransferase;
PDBTitle: human tyrosine aminotransferase
100c3cbfA_
not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:alpha-aminodipate aminotransferase;
PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27
101d1bw0a_
not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
102c2o1bA_
not modelled 99.9 13 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class i;
PDBTitle: structure of aminotransferase from staphylococcus aureus
103c3mebB_
not modelled 99.9 13 PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia
104d1gdea_
not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
105d2q7wa1
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
106d1ajsa_
not modelled 99.9 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
107d1m7ya_
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
108c3hdoB_
not modelled 99.9 17 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
109d2ay1a_
not modelled 99.9 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
110d1wyua1
not modelled 99.9 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
111c3asaA_
not modelled 99.9 14 PDB header:transferase
Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis
112c3k7yA_
not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: aspartate aminotransferase of plasmodium falciparum
113c3fkdC_
not modelled 99.9 12 PDB header:lyase
Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase;
PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis
114c2hdyA_
not modelled 99.9 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase
115d1js3a_
not modelled 99.9 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
116c3rq1A_
not modelled 99.9 11 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula
117c3g0tA_
not modelled 99.9 11 PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution
118c3g7qA_
not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:valine-pyruvate aminotransferase;
PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution
119d2gb3a1
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
120c3pplB_
not modelled 99.9 15 PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0