Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	I	I	K	Q	L	E	Q	E	Q	M	K	Q	D	V	P	S	F	R	P	G	D	T	V	E	V	K	V	W	V	V	E	G	S	K	K	R	L	Q	A	F	E	G	V	V	I	A	I	R	N	R	G	L	H	S	A	F	T
Secondary structure
SS confidence
Disorder		?												?	?		?																	?		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Sequence		V	R	K	I	S	N	G	E	G	V	E	R	V	F	Q	T	H	S	P	V	V	D	S	I	S	V	K	R	R	G	A	V	R	K	A	K	L	Y	Y	L	R	E	R	T	G	K	A	A	R	I	K	E	R	L	N
Secondary structure
SS confidence
Disorder																														?			?													?	?	?	?	?	?		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2j01 chain T domain 1 Region: 2 - 115 Aligned: 114 Modelled: 114 Confidence: 100.0% Identity: 46% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: Ribosomal protein L19 Phyre2 PDB 2gyc chain N domain 1 Region: 2 - 115 Aligned: 114 Modelled: 114 Confidence: 100.0% Identity: 100% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: Ribosomal protein L19 Phyre2 PDB 1nwx chain N Region: 1 - 115 Aligned: 114 Modelled: 115 Confidence: 100.0% Identity: 55% PDB header:ribosome Chain: N: PDB Molecule:ribosomal protein l19; PDBTitle: complex of the large ribosomal subunit from deinococcus2 radiodurans with abt-773 Phyre2 PDB 2zjr chain M domain 1 Region: 1 - 102 Aligned: 101 Modelled: 102 Confidence: 100.0% Identity: 55% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: Ribosomal protein L19 Phyre2 PDB 3bbo chain R Region: 3 - 111 Aligned: 108 Modelled: 109 Confidence: 100.0% Identity: 38% PDB header:ribosome Chain: R: PDB Molecule:ribosomal protein l19; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 PDB 2ftc chain K Region: 17 - 114 Aligned: 97 Modelled: 98 Confidence: 100.0% Identity: 26% PDB header:ribosome Chain: K: PDB Molecule:39s ribosomal protein l19, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome Phyre2 PDB 2e6z chain A Region: 20 - 78 Aligned: 48 Modelled: 59 Confidence: 73.6% Identity: 29% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 1jb7 chain A domain 1 Region: 14 - 61 Aligned: 41 Modelled: 41 Confidence: 68.7% Identity: 24% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Single strand DNA-binding domain, SSB Phyre2 PDB 2kvq chain G Region: 15 - 72 Aligned: 51 Modelled: 58 Confidence: 68.5% Identity: 29% PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex Phyre2 PDB 2jvv chain A Region: 15 - 72 Aligned: 51 Modelled: 58 Confidence: 68.5% Identity: 29% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain Phyre2 PDB 1npp chain A domain 2 Region: 19 - 74 Aligned: 49 Modelled: 56 Confidence: 67.1% Identity: 31% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 1zq1 chain A domain 1 Region: 19 - 92 Aligned: 64 Modelled: 66 Confidence: 65.5% Identity: 17% Fold: Sm-like fold Superfamily: GatD N-terminal domain-like Family: GatD N-terminal domain-like Phyre2 PDB 3iz5 chain Y Region: 2 - 97 Aligned: 87 Modelled: 96 Confidence: 65.2% Identity: 24% PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 1vqo chain T domain 1 Region: 6 - 98 Aligned: 85 Modelled: 93 Confidence: 63.9% Identity: 24% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: Ribosomal proteins L24p and L21e Phyre2 PDB 1nz9 chain A Region: 19 - 72 Aligned: 47 Modelled: 54 Confidence: 58.3% Identity: 36% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 1zq1 chain B Region: 19 - 91 Aligned: 63 Modelled: 73 Confidence: 57.3% Identity: 16% PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi Phyre2 PDB 2f1l chain A Region: 14 - 85 Aligned: 66 Modelled: 72 Confidence: 49.1% Identity: 21% PDB header:unknown function Chain: A: PDB Molecule:16s rrna processing protein; PDBTitle: crystal structure of a putative 16s ribosomal rna processing protein2 rimm (pa3744) from pseudomonas aeruginosa at 2.46 a resolution Phyre2 PDB 4a1c chain S Region: 2 - 97 Aligned: 87 Modelled: 96 Confidence: 49.1% Identity: 16% PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. Phyre2 PDB 1k8g chain C Region: 14 - 69 Aligned: 49 Modelled: 56 Confidence: 45.3% Identity: 18% PDB header:dna binding protein/dna Chain: C: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: crystal structure of the n-terminal domain of oxytricha2 nova telomere end binding protein alpha subunit both3 uncomplexed and complexed with telomeric ssdna Phyre2 PDB 3p8b chain B Region: 14 - 78 Aligned: 56 Modelled: 65 Confidence: 44.0% Identity: 27% PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 Phyre2 1 d2j01t1 2 d2gycn1 3 c1nwxN_ 4 d2zjrm1 5 c3bboR_ 6 c2ftcK_ 7 c2e6zA_ 8 d1jb7a1 9 c2kvqG_ 10 c2jvvA_ 11 d1nppa2 12 d1zq1a1 13 c3iz5Y_ 14 d1vqot1 15 d1nz9a_ 16 c1zq1B_ 17 c2f1lA_ 18 c4a1cS_ 19 c1k8gC_ 20 c3p8bB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2j01t1 100.0 46 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 2 d2gycn1 100.0 100 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 3 c1nwxN_ 100.0 55 PDB header:ribosome Chain: N: PDB Molecule:ribosomal protein l19; PDBTitle: complex of the large ribosomal subunit from deinococcus2 radiodurans with abt-773 4 d2zjrm1 100.0 55 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 5 c3bboR_ 100.0 38 PDB header:ribosome Chain: R: PDB Molecule:ribosomal protein l19; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 6 c2ftcK_ 100.0 26 PDB header:ribosome Chain: K: PDB Molecule:39s ribosomal protein l19, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 7 c2e6zA_ 73.6 29 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 8 d1jb7a1 68.7 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 9 c2kvqG_ 68.5 29 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 10 c2jvvA_ 68.5 29 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 11 d1nppa2 67.1 31 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 12 d1zq1a1 65.5 17 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 13 c3iz5Y_ 65.2 24 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 14 d1vqot1 63.9 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 15 d1nz9a_ 58.3 36 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 16 c1zq1B_ 57.3 16 PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi 17 c2f1lA_ 49.1 21 PDB header:unknown function Chain: A: PDB Molecule:16s rrna processing protein; PDBTitle: crystal structure of a putative 16s ribosomal rna processing protein2 rimm (pa3744) from pseudomonas aeruginosa at 2.46 a resolution 18 c4a1cS_ 49.1 16 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 19 c1k8gC_ 45.3 18 PDB header:dna binding protein/dna Chain: C: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: crystal structure of the n-terminal domain of oxytricha2 nova telomere end binding protein alpha subunit both3 uncomplexed and complexed with telomeric ssdna 20 c3p8bB_ 44.0 27 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 21 c1m1gB_ not modelled 41.8 26 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 22 c2dxcG_ not modelled 34.7 36 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 23 c1ph4A_ not modelled 32.1 21 PDB header:dna binding protein/dna Chain: A: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: crystal structure of the oxytricha nova telomere end-binding protein2 complexed with noncognate ssdna ggggttttggcg 24 c1jb7A_ not modelled 32.1 21 PDB header:dna-binding protein/dna Chain: A: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: dna g-quartets in a 1.86 a resolution structure of an oxytricha nova2 telomeric protein-dna complex 25 d2d6fa1 not modelled 31.7 23 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 26 d1ugpb_ not modelled 28.1 45 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 27 c3cnrA_ not modelled 26.2 33 PDB header:unknown function Chain: A: PDB Molecule:type iv fimbriae assembly protein; PDBTitle: crystal structure of pilz (xac1133) from xanthomonas2 axonopodis pv citri 28 c3qz9D_ not modelled 26.0 45 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 29 d1hr0w_ not modelled 25.9 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 30 c2zkrt_ not modelled 24.9 40 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 31 d1v29b_ not modelled 24.8 27 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 32 c2eifA_ not modelled 24.5 16 PDB header:gene regulation Chain: A: PDB Molecule:protein (eukaryotic translation initiation factor 5a); PDBTitle: eukaryotic translation initiation factor 5a from methanococcus2 jannaschii 33 d1ah9a_ not modelled 22.1 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 34 c2bi0A_ not modelled 21.4 19 PDB header:hypothetical protein Chain: A: PDB Molecule:hypothetical protein rv0216; PDBTitle: rv0216, a conserved hypothetical protein from mycobacterium2 tuberculosis that is essential for bacterial survival3 during infection, has a double hotdogfold 35 c3i4oA_ not modelled 21.0 29 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 36 d2qdyb1 not modelled 20.8 36 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 37 c2v43A_ not modelled 20.7 20 PDB header:regulator Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb; PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli 38 d1kl9a2 not modelled 20.5 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 39 d1qzga_ not modelled 20.1 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 40 c2fhdA_ not modelled 19.7 30 PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9/crb2; PDBTitle: crystal structure of crb2 tandem tudor domains 41 c2kytA_ not modelled 19.7 38 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 42 d1je3a_ not modelled 19.1 17 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 43 d1y14b1 not modelled 19.0 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 44 d1vqoq1 not modelled 18.9 18 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 45 d1ejxb_ not modelled 17.5 26 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 46 c3e0eA_ not modelled 17.4 35 PDB header:replication Chain: A: PDB Molecule:replication protein a; PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b 47 d2bi0a2 not modelled 17.3 14 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:MaoC-like 48 d1e9ya1 not modelled 16.9 26 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 49 d4ubpb_ not modelled 16.1 24 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 50 d1xjva1 not modelled 15.8 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 51 d2do3a1 not modelled 14.9 37 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 52 c2l66B_ not modelled 14.3 35 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 53 d2nn6i1 not modelled 14.0 36 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 54 d2bi0a1 not modelled 14.0 19 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:MaoC-like 55 c2rm4A_ not modelled 14.0 21 PDB header:protein binding Chain: A: PDB Molecule:cg6311-pb; PDBTitle: solution structure of the lsm domain of dm edc3 (enhancer2 of decapping 3) 56 c4a1aP_ not modelled 13.5 19 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 57 c3izcU_ not modelled 13.4 21 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 58 c2wknE_ not modelled 13.4 23 PDB header:hydrolase Chain: E: PDB Molecule:formamidase; PDBTitle: gamma lactamase from delftia acidovorans 59 c2d6fA_ not modelled 13.3 25 PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 60 d1is3a_ not modelled 12.6 22 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Galectin (animal S-lectin) 61 d1bf2a1 not modelled 12.6 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 62 d2ahob2 not modelled 12.1 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 63 c2nn6I_ not modelled 12.0 36 PDB header:hydrolase/transferase Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 64 c2khjA_ not modelled 11.9 26 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 65 c1e9zA_ not modelled 11.7 24 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 66 d1q46a2 not modelled 11.6 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 67 d1hh2p1 not modelled 11.4 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 68 c3qgaD_ not modelled 11.1 26 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 69 c2dbkA_ not modelled 11.0 31 PDB header:signaling protein Chain: A: PDB Molecule:crk-like protein; PDBTitle: solution structures of the sh3 domain of human crk-like2 protein 70 c3u5gB_ not modelled 10.6 13 PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s1-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 71 d1go3e1 not modelled 10.4 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 72 c1y43B_ not modelled 10.4 29 PDB header:hydrolase Chain: B: PDB Molecule:aspergillopepsin ii heavy chain; PDBTitle: crystal structure of aspergilloglutamic peptidase from2 aspergillus niger 73 c1xjvA_ not modelled 10.2 21 PDB header:transcription/dna Chain: A: PDB Molecule:protection of telomeres 1; PDBTitle: crystal structure of human pot1 bound to telomeric single-2 stranded dna (ttagggttag) 74 d2nn6h1 not modelled 10.1 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 75 d2ifra1 not modelled 9.9 22 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Peptidase A4 76 d1t0ha_ not modelled 9.6 25 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 77 c1jsyA_ not modelled 9.6 15 PDB header:signaling protein Chain: A: PDB Molecule:bovine arrestin-2 (full length); PDBTitle: crystal structure of bovine arrestin-2 78 d1vyva1 not modelled 9.5 19 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 79 d2hbaa1 not modelled 9.4 25 Fold:MbtH/L9 domain-like Superfamily:L9 N-domain-like Family:Ribosomal protein L9 N-domain 80 c3dm3A_ not modelled 9.3 26 PDB header:replication Chain: A: PDB Molecule:replication factor a; PDBTitle: crystal structure of a domain of a replication factor a2 protein, from methanocaldococcus jannaschii. northeast3 structural genomics target mjr118e 81 d2vv5a1 not modelled 9.3 36 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 82 c3l53F_ not modelled 9.1 31 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative fumarylacetoacetate isomerase/hydrolase; PDBTitle: crystal structure of a putative fumarylacetoacetate2 isomerase/hydrolase from oleispira antarctica 83 d1cqua_ not modelled 9.1 25 Fold:MbtH/L9 domain-like Superfamily:L9 N-domain-like Family:Ribosomal protein L9 N-domain 84 c2xhcA_ not modelled 9.1 19 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 85 c2xzm4_ not modelled 8.9 16 PDB header:ribosome Chain: 4: PDB Molecule:40s ribosomal protein s3a; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 86 c2ebpA_ not modelled 8.9 18 PDB header:cell adhesion Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1; PDBTitle: solution structure of the sh3 domain from human sam and sh32 domain containing protein 1 87 c2k52A_ not modelled 8.7 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 88 d1gr3a_ not modelled 8.6 17 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 89 c1gr3A_ not modelled 8.6 17 PDB header:collagen Chain: A: PDB Molecule:collagen x; PDBTitle: structure of the human collagen x nc1 trimer 90 d2j01o1 not modelled 8.2 22 Fold:Ribosomal protein L14 Superfamily:Ribosomal protein L14 Family:Ribosomal protein L14 91 c1t0jA_ not modelled 8.2 25 PDB header:signaling protein Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a; PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit 92 d2je6i1 not modelled 8.2 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 93 c3fxhA_ not modelled 8.1 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:integron gene cassette protein hfx_cass2; PDBTitle: crystal structure from the mobile metagenome of halifax2 harbour sewage outfall: integron cassette protein hfx_cass2 94 d1t3la1 not modelled 7.6 45 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 95 c2eyxA_ not modelled 7.6 29 PDB header:signaling protein Chain: A: PDB Molecule:v-crk sarcoma virus ct10 oncogene homolog PDBTitle: c-terminal sh3 domain of ct10-regulated kinase 96 c3qiiA_ not modelled 7.5 24 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 97 c3d0fA_ not modelled 7.5 50 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca; PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718 98 c2khiA_ not modelled 7.5 33 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1 99 d1vyua1 not modelled 7.2 19 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0