Email l.a.kelley@imperial.ac.uk Description P60651 Date Thu Jan 5 12:07:00 GMT 2012 Unique Job ID b00b3ed96ca944b2

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3nipB_ 100.0 40 PDB header:hydrolase Chain: B: PDB Molecule:3-guanidinopropionase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinopropionase2 complexed with 1,6-diaminohexane 2 d1gq6a_ 100.0 40 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 3 c3nioF_ 100.0 40 PDB header:hydrolase Chain: F: PDB Molecule:guanidinobutyrase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinobutyrase 4 c3m1rF_ 100.0 23 PDB header:hydrolase Chain: F: PDB Molecule:formimidoylglutamase; PDBTitle: the crystal structure of formimidoylglutamase from bacillus2 subtilis subsp. subtilis str. 168 5 c3lhlA_ 100.0 27 PDB header:hydrolase Chain: A: PDB Molecule:putative agmatinase; PDBTitle: crystal structure of a putative agmatinase from clostridium difficile 6 d1woha_ 100.0 29 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 7 d1xfka_ 100.0 23 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 8 d2a0ma1 100.0 24 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 9 c3pzlA_ 100.0 27 PDB header:hydrolase Chain: A: PDB Molecule:agmatine ureohydrolase; PDBTitle: the crystal structure of agmatine ureohydrolase of thermoplasma2 volcanium 10 d1pq3a_ 100.0 25 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 11 d1d3va_ 100.0 27 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 12 d2ceva_ 100.0 30 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 13 c3mmrA_ 100.0 23 PDB header:hydrolase Chain: A: PDB Molecule:arginase; PDBTitle: structure of plasmodium falciparum arginase in complex with abh 14 d2aeba1 100.0 29 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 15 c2eivH_ 100.0 29 PDB header:hydrolase Chain: H: PDB Molecule:arginase; PDBTitle: crystal structure of the arginase from thermus thermophilus 16 c3a8tA_ 80.6 12 PDB header:transferase Chain: A: PDB Molecule:adenylate isopentenyltransferase; PDBTitle: plant adenylate isopentenyltransferase in complex with atp 17 c3d3qB_ 71.7 20 PDB header:transferase Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of trna delta(2)-isopentenylpyrophosphate2 transferase (se0981) from staphylococcus epidermidis.3 northeast structural genomics consortium target ser100 18 c3eplA_ 67.9 17 PDB header:transferase/rna Chain: A: PDB Molecule:trna isopentenyltransferase; PDBTitle: crystallographic snapshots of eukaryotic2 dimethylallyltransferase acting on trna: insight into trna3 recognition and reaction mechanism 19 c3fozB_ 67.5 25 PDB header:transferase/rna Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase; PDBTitle: structure of e. coli isopentenyl-trna transferase in complex with e.2 coli trna(phe) 20 c3exaD_ 65.1 9 PDB header:transferase Chain: D: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of the full-length trna2 isopentenylpyrophosphate transferase (bh2366) from3 bacillus halodurans, northeast structural genomics4 consortium target bhr41. 21 c3crqA_ not modelled 64.5 28 PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel 22 d1umya_ not modelled 59.4 16 Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase 23 c3godA_ not modelled 50.1 17 PDB header:immune system Chain: A: PDB Molecule:cas1; PDBTitle: structural basis for dnase activity of a conserved protein2 implicated in crispr-mediated antiviral defense 24 d1lt7a_ not modelled 43.7 15 Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase 25 d2fiqa1 not modelled 39.9 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:GatZ-like 26 d1tifa_ not modelled 32.6 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:Translation initiation factor IF3, N-terminal domain Family:Translation initiation factor IF3, N-terminal domain 27 d1hi9a_ not modelled 31.3 15 Fold:Dipeptide transport protein Superfamily:Dipeptide transport protein Family:Dipeptide transport protein 28 c2oh2B_ not modelled 30.4 20 PDB header:transferase/dna Chain: B: PDB Molecule:dna polymerase kappa; PDBTitle: ternary complex of human dna polymerase 29 c2ze5A_ not modelled 28.3 14 PDB header:transferase Chain: A: PDB Molecule:isopentenyl transferase; PDBTitle: crystal structure of adenosine phosphate-isopentenyltransferase 30 c3nkdB_ not modelled 27.5 17 PDB header:immune system Chain: B: PDB Molecule:crispr-associated protein cas1; PDBTitle: structure of crisp-associated protein cas1 from escherichia coli str.2 k-12 31 c1t94B_ not modelled 24.3 19 PDB header:replication Chain: B: PDB Molecule:polymerase (dna directed) kappa; PDBTitle: crystal structure of the catalytic core of human dna2 polymerase kappa 32 d1kyqa1 not modelled 23.0 33 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Siroheme synthase N-terminal domain-like 33 c2c2xB_ not modelled 22.7 23 PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase- PDBTitle: three dimensional structure of bifunctional2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase3 from mycobacterium tuberculosis 34 c1k98A_ not modelled 22.3 24 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: adomet complex of meth c-terminal fragment 35 c3pv9D_ not modelled 22.2 17 PDB header:immune system Chain: D: PDB Molecule:putative uncharacterized protein ph1245; PDBTitle: structure of ph1245, a cas1 from pyrococcus horikoshii 36 c3lfxE_ not modelled 19.0 10 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: structure of tm1797, a cas1 protein from thermotoga maritima 37 c2z84A_ not modelled 17.6 15 PDB header:hydrolase Chain: A: PDB Molecule:ufm1-specific protease 1; PDBTitle: insights from crystal and solution structures of mouse ufsp1 38 d3bofa2 not modelled 15.3 20 Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase 39 c3ecsD_ not modelled 14.9 14 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 40 c2yzsB_ not modelled 14.4 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of uncharacterized conserved protein from2 aquifex aeolicus 41 c1a4iB_ not modelled 13.7 21 PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase / PDBTitle: human tetrahydrofolate dehydrogenase / cyclohydrolase 42 d2bona1 not modelled 12.9 14 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 43 c1vbwA_ not modelled 12.9 20 PDB header:protein binding Chain: A: PDB Molecule:trypsin inhibitor bgit; PDBTitle: crystal structure of bitter gourd trypsin inhibitor 44 c3mr2A_ not modelled 12.7 36 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm) 45 d1t94a2 not modelled 12.1 20 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 46 d1b74a1 not modelled 11.6 12 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 47 c3pu6A_ not modelled 11.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of an uncharacterized protein from wolinella2 succinogenes 48 d2hkja1 not modelled 11.2 22 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Topoisomerase VI-B subunit middle domain 49 d1w85b1 not modelled 11.2 17 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 50 d1b0aa1 not modelled 10.6 27 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 51 c3h7aC_ not modelled 10.4 6 PDB header:oxidoreductase Chain: C: PDB Molecule:short chain dehydrogenase; PDBTitle: crystal structure of short-chain dehydrogenase from2 rhodopseudomonas palustris 52 c3l07B_ not modelled 10.2 24 PDB header:oxidoreductase,hydrolase Chain: B: PDB Molecule:bifunctional protein fold; PDBTitle: methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate2 cyclohydrolase, putative bifunctional protein fold from francisella3 tularensis. 53 c1b0aA_ not modelled 10.0 27 PDB header:oxidoreductase,hydrolase Chain: A: PDB Molecule:protein (fold bifunctional protein); PDBTitle: 5,10, methylene-tetrahydropholate2 dehydrogenase/cyclohydrolase from e coli. 54 c3nglA_ not modelled 9.8 24 PDB header:oxidoreductase, hydrolase Chain: A: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of bifunctional 5,10-methylenetetrahydrofolate2 dehydrogenase / cyclohydrolase from thermoplasma acidophilum 55 c3dfzB_ not modelled 9.6 16 PDB header:oxidoreductase Chain: B: PDB Molecule:precorrin-2 dehydrogenase; PDBTitle: sirc, precorrin-2 dehydrogenase 56 c3s40C_ not modelled 9.5 17 PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne 57 c2bp7F_ not modelled 9.5 15 PDB header:oxidoreductase Chain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1) 58 d1ccra_ not modelled 9.3 34 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 59 d1dwma_ not modelled 9.3 23 Fold:CI-2 family of serine protease inhibitors Superfamily:CI-2 family of serine protease inhibitors Family:CI-2 family of serine protease inhibitors 60 d1k1sa2 not modelled 9.3 20 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 61 c3gqcB_ not modelled 9.1 17 PDB header:transferase/dna Chain: B: PDB Molecule:dna repair protein rev1; PDBTitle: structure of human rev1-dna-dntp ternary complex 62 c1tinA_ not modelled 8.8 20 PDB header:serine protease inhibitor Chain: A: PDB Molecule:trypsin inhibitor v; PDBTitle: three-dimensional structure in solution of cucurbita maxima2 trypsin inhibitor-v determined by nmr spectroscopy 63 c2w9kA_ not modelled 8.8 25 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crithidia fasciculata cytochrome c 64 d1k8kg_ not modelled 8.7 13 Fold:alpha-alpha superhelix Superfamily:Arp2/3 complex 16 kDa subunit ARPC5 Family:Arp2/3 complex 16 kDa subunit ARPC5 65 d1ebfa2 not modelled 8.6 14 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Homoserine dehydrogenase-like 66 c3auzA_ not modelled 8.6 19 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11 with manganese 67 c3bolB_ not modelled 8.4 19 PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ 68 d2d5ra1 not modelled 8.2 22 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:CAF1-like ribonuclease 69 c1k1qA_ not modelled 8.2 20 PDB header:transcription Chain: A: PDB Molecule:dbh protein; PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus 70 d1ytca_ not modelled 8.1 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 71 c2fllA_ not modelled 8.0 24 PDB header:replication/dna Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: ternary complex of human dna polymerase iota with dna and dttp 72 d1im4a_ not modelled 7.9 14 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 73 c3fwaA_ not modelled 7.9 15 PDB header:flavoprotein Chain: A: PDB Molecule:reticuline oxidase; PDBTitle: structure of berberine bridge enzyme, c166a variant in complex with2 (s)-reticuline 74 c3av0A_ not modelled 7.9 19 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11-rad50 bound to atp s 75 c1t3nB_ not modelled 7.8 36 PDB header:replication/dna Chain: B: PDB Molecule:polymerase (dna directed) iota; PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp 76 c1sseA_ not modelled 7.7 38 PDB header:transcription activator Chain: A: PDB Molecule:ap-1 like transcription factor yap1; PDBTitle: solution structure of the oxidized form of the yap1 redox2 domain 77 c4a26B_ not modelled 7.6 21 PDB header:oxidoreductase Chain: B: PDB Molecule:putative c-1-tetrahydrofolate synthase, cytoplasmic; PDBTitle: the crystal structure of leishmania major n5,n10-2 methylenetetrahydrofolate dehydrogenase/cyclohydrolase 78 d1t5oa_ not modelled 7.6 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 79 c2ri0B_ not modelled 7.5 14 PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans 80 d1ii7a_ not modelled 7.4 16 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DNA double-strand break repair nuclease 81 d3bula2 not modelled 7.3 23 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 82 d2ozlb1 not modelled 7.2 10 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 83 c3outC_ not modelled 7.0 10 PDB header:isomerase Chain: C: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate. 84 c1fcdB_ not modelled 7.0 15 PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution 85 d1qs0b1 not modelled 6.9 13 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 86 c3p2oB_ not modelled 6.9 32 PDB header:oxidoreductase, hydrolase Chain: B: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni 87 c2aq4A_ not modelled 6.8 22 PDB header:transferase Chain: A: PDB Molecule:dna repair protein rev1; PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp. 88 c3p2oA_ not modelled 6.8 24 PDB header:oxidoreductase, hydrolase Chain: A: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni 89 d1j20a2 not modelled 6.7 33 Fold:Argininosuccinate synthetase, C-terminal domain Superfamily:Argininosuccinate synthetase, C-terminal domain Family:Argininosuccinate synthetase, C-terminal domain 90 d1a4ia1 not modelled 6.7 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 91 c2r8kB_ not modelled 6.6 9 PDB header:replication, transferase/dna Chain: B: PDB Molecule:dna polymerase eta; PDBTitle: structure of the eukaryotic dna polymerase eta in complex with 1,2-2 d(gpg)-cisplatin containing dna 92 d1vyra_ not modelled 6.6 13 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 93 d1zeta2 not modelled 6.6 27 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 94 d1poia_ not modelled 6.4 14 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 95 d1ju2a1 not modelled 6.3 23 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 96 d2qapa1 not modelled 6.1 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 97 d2bfdb1 not modelled 6.0 15 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 98 c1cirA_ not modelled 6.0 28 PDB header:serine protease inhibitor Chain: A: PDB Molecule:chymotrypsin inhibitor 2; PDBTitle: complex of two fragments of ci2 [(1-40)(dot)(41-64)] 99 d1fcda1 not modelled 6.0 17 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains