Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	L	T	L	T	L	T	G	T	G	G	A	Q	G	V	P	A	W	G	C	E	C	A	A	C	A	R	A	R	R	S	P	Q	Y	R	R	Q	P	C	S	G	V	V	K	F	N	D	A	I	T	L	I	D	A	G	L	H	D	L
Secondary structure
SS confidence
Disorder		?	?																											?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	D	R	W	S	P	G	S	F	Q	Q	F	L	L	T	H	Y	H	M	D	H	V	Q	G	L	F	P	L	R	W	G	V	G	D	P	I	P	V	Y	G	P	P	D	E	Q	G	C	D	D	L	F	K	H	P	G	L	L	D	F	S
Secondary structure
SS confidence
Disorder			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	T	V	E	P	F	V	V	F	D	L	Q	G	L	Q	V	T	P	L	P	L	N	H	S	K	L	T	F	G	Y	L	L	E	T	A	H	S	R	V	A	W	L	S	D	T	A	G	L	P	E	K	T	L	K	F	L	R	N	N	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	Q	V	M	V	M	D	C	S	H	P	P	R	A	D	A	P	R	N	H	C	D	L	N	T	V	L	A	L	N	Q	V	I	R	S	P	R	V	I	L	T	H	I	S	H	Q	F	D	A	W	L	M	E	N	A	L	P	S	G	F
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.
Sequence		E	V	G	F	D	G	M	E	I	G	V	A
Secondary structure
SS confidence
Disorder												?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3g1p chain A Region: 2 - 249 Aligned: 248 Modelled: 248 Confidence: 100.0% Identity: 100% PDB header:lyase Chain: A: PDB Molecule:protein phnp; PDBTitle: crystals structure of phnp from e.coli k-12 Phyre2 PDB 3md7 chain A Region: 2 - 252 Aligned: 240 Modelled: 251 Confidence: 100.0% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase-like; PDBTitle: crystal structure of a beta-lactamase-like protein bound to gmp from2 brucella melitensis Phyre2 PDB 1xto chain A Region: 5 - 251 Aligned: 243 Modelled: 247 Confidence: 100.0% Identity: 20% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Coenzyme PQQ synthesis protein B, PqqB Phyre2 PDB 3zwf chain A Region: 3 - 251 Aligned: 220 Modelled: 231 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:zinc phosphodiesterase elac protein 1; PDBTitle: crystal structure of human trnase z, short form (elac1). Phyre2 PDB 2cbn chain A domain 1 Region: 3 - 251 Aligned: 228 Modelled: 228 Confidence: 100.0% Identity: 25% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: RNase Z-like Phyre2 PDB 1y44 chain A domain 1 Region: 4 - 251 Aligned: 227 Modelled: 230 Confidence: 100.0% Identity: 25% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: RNase Z-like Phyre2 PDB 1zkp chain D Region: 3 - 250 Aligned: 226 Modelled: 227 Confidence: 100.0% Identity: 18% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ba1088; PDBTitle: 1.5a resolution crystal structure of a metallo beta lactamase family2 protein, the elac homolgue of bacillus anthracis, a putative3 ribonuclease Phyre2 PDB 1zkp chain A domain 1 Region: 4 - 250 Aligned: 225 Modelled: 229 Confidence: 100.0% Identity: 18% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: YhfI-like Phyre2 PDB 2p4z chain A Region: 2 - 251 Aligned: 232 Modelled: 234 Confidence: 100.0% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:metal-dependent hydrolases of the beta-lactamase PDBTitle: a ferredoxin-like metallo-beta-lactamase superfamily protein from2 thermoanaerobacter tengcongensis Phyre2 PDB 3rpc chain D Region: 2 - 251 Aligned: 213 Modelled: 219 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: D: PDB Molecule:possible metal-dependent hydrolase; PDBTitle: the crystal structure of a possible metal-dependent hydrolase from2 veillonella parvula dsm 2008 Phyre2 PDB 2e7y chain A domain 1 Region: 5 - 251 Aligned: 210 Modelled: 217 Confidence: 100.0% Identity: 20% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: RNase Z-like Phyre2 PDB 3kl7 chain A Region: 2 - 243 Aligned: 200 Modelled: 213 Confidence: 99.9% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent hydrolase; PDBTitle: crystal structure of putative metal-dependent hydrolase2 (yp_001302908.1) from parabacteroides distasonis atcc 8503 at 2.30 a3 resolution Phyre2 PDB 2wyl chain F Region: 2 - 251 Aligned: 217 Modelled: 222 Confidence: 99.9% Identity: 17% PDB header:hydrolase Chain: F: PDB Molecule:l-ascorbate-6-phosphate lactonase ulag; PDBTitle: apo structure of a metallo-b-lactamase Phyre2 PDB 2i7t chain A domain 1 Region: 2 - 221 Aligned: 194 Modelled: 197 Confidence: 99.9% Identity: 15% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: beta-CASP RNA-metabolising hydrolases Phyre2 PDB 2az4 chain A Region: 4 - 221 Aligned: 191 Modelled: 191 Confidence: 99.9% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ef2904; PDBTitle: crystal structure of a protein of unknown function from enterococcus2 faecalis v583 Phyre2 PDB 3zq4 chain C Region: 3 - 247 Aligned: 220 Modelled: 222 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1 Phyre2 PDB 3bk2 chain A Region: 3 - 247 Aligned: 222 Modelled: 218 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:metal dependent hydrolase; PDBTitle: crystal structure analysis of the rnase j/ump complex Phyre2 PDB 2dkf chain A domain 1 Region: 4 - 221 Aligned: 194 Modelled: 195 Confidence: 99.9% Identity: 18% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: beta-CASP RNA-metabolising hydrolases Phyre2 PDB 3bv6 chain D Region: 2 - 236 Aligned: 201 Modelled: 206 Confidence: 99.9% Identity: 21% PDB header:hydrolase Chain: D: PDB Molecule:metal-dependent hydrolase; PDBTitle: crystal structure of uncharacterized metallo protein from vibrio2 cholerae with beta-lactamase like fold Phyre2 PDB 2xr1 chain A Region: 1 - 208 Aligned: 184 Modelled: 185 Confidence: 99.9% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei Phyre2 1 c3g1pA_ 2 c3md7A_ 3 d1xtoa_ 4 c3zwfA_ 5 d2cbna1 6 d1y44a1 7 c1zkpD_ 8 d1zkpa1 9 c2p4zA_ 10 c3rpcD_ 11 d2e7ya1 12 c3kl7A_ 13 c2wylF_ 14 d2i7ta1 15 c2az4A_ 16 c3zq4C_ 17 c3bk2A_ 18 d2dkfa1 19 c3bv6D_ 20 c2xr1A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3g1pA_ 100.0 100 PDB header:lyase Chain: A: PDB Molecule:protein phnp; PDBTitle: crystals structure of phnp from e.coli k-12 2 c3md7A_ 100.0 24 PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase-like; PDBTitle: crystal structure of a beta-lactamase-like protein bound to gmp from2 brucella melitensis 3 d1xtoa_ 100.0 20 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Coenzyme PQQ synthesis protein B, PqqB 4 c3zwfA_ 100.0 23 PDB header:hydrolase Chain: A: PDB Molecule:zinc phosphodiesterase elac protein 1; PDBTitle: crystal structure of human trnase z, short form (elac1). 5 d2cbna1 100.0 25 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:RNase Z-like 6 d1y44a1 100.0 25 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:RNase Z-like 7 c1zkpD_ 100.0 18 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ba1088; PDBTitle: 1.5a resolution crystal structure of a metallo beta lactamase family2 protein, the elac homolgue of bacillus anthracis, a putative3 ribonuclease 8 d1zkpa1 100.0 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:YhfI-like 9 c2p4zA_ 100.0 13 PDB header:hydrolase Chain: A: PDB Molecule:metal-dependent hydrolases of the beta-lactamase PDBTitle: a ferredoxin-like metallo-beta-lactamase superfamily protein from2 thermoanaerobacter tengcongensis 10 c3rpcD_ 100.0 17 PDB header:hydrolase Chain: D: PDB Molecule:possible metal-dependent hydrolase; PDBTitle: the crystal structure of a possible metal-dependent hydrolase from2 veillonella parvula dsm 2008 11 d2e7ya1 100.0 20 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:RNase Z-like 12 c3kl7A_ 99.9 16 PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent hydrolase; PDBTitle: crystal structure of putative metal-dependent hydrolase2 (yp_001302908.1) from parabacteroides distasonis atcc 8503 at 2.30 a3 resolution 13 c2wylF_ 99.9 17 PDB header:hydrolase Chain: F: PDB Molecule:l-ascorbate-6-phosphate lactonase ulag; PDBTitle: apo structure of a metallo-b-lactamase 14 d2i7ta1 99.9 15 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:beta-CASP RNA-metabolising hydrolases 15 c2az4A_ 99.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ef2904; PDBTitle: crystal structure of a protein of unknown function from enterococcus2 faecalis v583 16 c3zq4C_ 99.9 19 PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1 17 c3bk2A_ 99.9 19 PDB header:hydrolase Chain: A: PDB Molecule:metal dependent hydrolase; PDBTitle: crystal structure analysis of the rnase j/ump complex 18 d2dkfa1 99.9 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:beta-CASP RNA-metabolising hydrolases 19 c3bv6D_ 99.9 21 PDB header:hydrolase Chain: D: PDB Molecule:metal-dependent hydrolase; PDBTitle: crystal structure of uncharacterized metallo protein from vibrio2 cholerae with beta-lactamase like fold 20 c2xr1A_ 99.9 16 PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei 21 c2xr1B_ not modelled 99.9 16 PDB header:hydrolase Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei 22 c2ycbA_ not modelled 99.9 20 PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor; PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus 23 c3af5A_ not modelled 99.9 19 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ph1404; PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii 24 c3h3eA_ not modelled 99.9 12 PDB header:structural genomics, metal binding prote Chain: A: PDB Molecule:uncharacterized protein tm1679; PDBTitle: crystal structure of tm1679, a metal-dependent hydrolase of2 the beta-lactamase superfamily 25 d1vjna_ not modelled 99.9 15 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Hypothetical protein TM0207 26 d2i7xa1 not modelled 99.9 13 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:beta-CASP RNA-metabolising hydrolases 27 c2i7xA_ not modelled 99.9 13 PDB header:rna binding protein, protein binding Chain: A: PDB Molecule:protein cft2; PDBTitle: structure of yeast cpsf-100 (ydh1p) 28 c2bibA_ not modelled 99.8 14 PDB header:hydrolase Chain: A: PDB Molecule:teichoic acid phosphorylcholine esterase/ choline binding PDBTitle: crystal structure of the complete modular teichioic acid2 phosphorylcholine esterase pce (cbpe) from streptococcus3 pneumoniae 29 c2r2dC_ not modelled 99.7 15 PDB header:hydrolase Chain: C: PDB Molecule:zn-dependent hydrolases; PDBTitle: structure of a quorum-quenching lactonase (aiib) from agrobacterium2 tumefaciens 30 d1k07a_ not modelled 99.7 12 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 31 d2az4a1 not modelled 99.7 13 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:beta-CASP RNA-metabolising hydrolases 32 d2aioa1 not modelled 99.7 19 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 33 c3adrA_ not modelled 99.7 18 PDB header:signaling protein Chain: A: PDB Molecule:putative uncharacterized protein st1585; PDBTitle: the first crystal structure of an archaeal metallo-beta-lactamase2 superfamily protein; st1585 from sulfolobus tokodaii 34 d1p9ea_ not modelled 99.7 20 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Methyl parathion hydrolase 35 c1p9eA_ not modelled 99.7 20 PDB header:hydrolase Chain: A: PDB Molecule:methyl parathion hydrolase; PDBTitle: crystal structure analysis of methyl parathion hydrolase from2 pseudomonas sp wbc-3 36 c1vmeB_ not modelled 99.7 14 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 37 c3lvzA_ not modelled 99.7 13 PDB header:hydrolase Chain: A: PDB Molecule:blr6230 protein; PDBTitle: new refinement of the crystal structure of bjp-1, a subclass b32 metallo-beta-lactamase of bradyrhizobium japonicum 38 c2ohiB_ not modelled 99.7 14 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 39 c1e5dA_ not modelled 99.6 12 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 40 c2q9uB_ not modelled 99.6 9 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 41 d2gmna1 not modelled 99.6 15 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 42 c3eshB_ not modelled 99.6 18 PDB header:hydrolase Chain: B: PDB Molecule:protein similar to metal-dependent hydrolase; PDBTitle: crystal structure of a probable metal-dependent hydrolase2 from staphylococcus aureus. northeast structural genomics3 target zr314 43 c2zo4A_ not modelled 99.6 17 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase family protein; PDBTitle: crystal structure of metallo-beta-lactamase family protein ttha14292 from thermus thermophilus hb8 44 d1vmea2 not modelled 99.6 12 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 45 c2br6A_ not modelled 99.6 14 PDB header:hydrolase Chain: A: PDB Molecule:aiia-like protein; PDBTitle: crystal structure of quorum-quenching n-acyl homoserine2 lactone lactonase 46 c3hnnD_ not modelled 99.6 11 PDB header:oxidoreductase Chain: D: PDB Molecule:putative diflavin flavoprotein a 5; PDBTitle: crystal structure of putative diflavin flavoprotein a 5 (fragment 1-2 254) from nostoc sp. pcc 7120, northeast structural genomics3 consortium target nsr435a 47 c3aj3A_ not modelled 99.6 16 PDB header:hydrolase Chain: A: PDB Molecule:4-pyridoxolactonase; PDBTitle: crystal structure of selenomethionine substituted 4-pyridoxolactonase2 from mesorhizobium loti 48 d1ztca1 not modelled 99.6 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:TM0894-like 49 c3l6nA_ not modelled 99.6 13 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase; PDBTitle: crystal structure of metallo-beta-lactamase ind-7 50 d1ko3a_ not modelled 99.6 16 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 51 c2fhxB_ not modelled 99.6 14 PDB header:hydrolase, metal binding protein Chain: B: PDB Molecule:spm-1; PDBTitle: pseudomonas aeruginosa spm-1 metallo-beta-lactamase 52 d1znba_ not modelled 99.6 16 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 53 c1ychD_ not modelled 99.6 12 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 54 d1ycga2 not modelled 99.5 11 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 55 d1wraa1 not modelled 99.5 13 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Pce catalytic domain-like 56 d2q0ia1 not modelled 99.5 13 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:PqsE-like 57 d1m2xa_ not modelled 99.5 13 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 58 c2yz3B_ not modelled 99.5 15 PDB header:hydrolase Chain: B: PDB Molecule:metallo-beta-lactamase; PDBTitle: crystallographic investigation of inhibition mode of the2 vim-2 metallo-beta-lactamase from pseudomonas aeruginosa3 with mercaptocarboxylate inhibitor 59 d1mqoa_ not modelled 99.5 13 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 60 d1jjta_ not modelled 99.5 15 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 61 c2zwrA_ not modelled 99.5 19 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase superfamily protein; PDBTitle: crystal structure of ttha1623 from thermus thermophilus hb8 62 d1qh5a_ not modelled 99.5 20 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase) 63 c3sd9B_ not modelled 99.5 18 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase; PDBTitle: crystal structure of serratia fonticola sfh-i: source of the2 nucleophile in the catalytic mechanism of mono-zinc metallo-beta-3 lactamases 64 c2gcuD_ not modelled 99.5 19 PDB header:hydrolase Chain: D: PDB Molecule:putative hydroxyacylglutathione hydrolase 3; PDBTitle: x-ray structure of gene product from arabidopsis thaliana2 at1g53580 65 d1x8ha_ not modelled 99.5 19 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 66 d1e5da2 not modelled 99.5 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 67 c3rkjA_ not modelled 99.4 14 PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase ndm-1; PDBTitle: crystal structure of new delhi metallo-beta-lactamase-1 from2 klebsiella pnueumoniae 68 c3spuB_ not modelled 99.4 9 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase ndm-1; PDBTitle: apo ndm-1 crystal structure 69 c3tp9B_ not modelled 99.4 15 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein; PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains 70 d1xm8a_ not modelled 99.4 16 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase) 71 c3r2uC_ not modelled 99.4 15 PDB header:hydrolase Chain: C: PDB Molecule:metallo-beta-lactamase family protein; PDBTitle: 2.1 angstrom resolution crystal structure of metallo-beta-lactamase2 from staphylococcus aureus subsp. aureus col 72 c2p18A_ not modelled 99.4 15 PDB header:hydrolase Chain: A: PDB Molecule:glyoxalase ii; PDBTitle: crystal structure of the leishmania infantum glyoxalase ii 73 c2xf4A_ not modelled 99.3 16 PDB header:hydrolase Chain: A: PDB Molecule:hydroxyacylglutathione hydrolase; PDBTitle: crystal structure of salmonella enterica serovar2 typhimurium ycbl 74 d2qeda1 not modelled 99.3 19 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase) 75 c2cfuA_ not modelled 99.2 13 PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. 76 d2cfua2 not modelled 99.2 13 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Alkylsulfatase-like 77 d2p97a1 not modelled 98.8 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Ava3068-like 78 c3lnbA_ not modelled 67.6 13 PDB header:transferase Chain: A: PDB Molecule:n-acetyltransferase family protein; PDBTitle: crystal structure analysis of arylamine n-acetyltransferase c from2 bacillus anthracis 79 c2pfrB_ not modelled 63.8 11 PDB header:transferase Chain: B: PDB Molecule:arylamine n-acetyltransferase 2; PDBTitle: human n-acetyltransferase 2 80 d2bsza1 not modelled 62.8 14 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Arylamine N-acetyltransferase 81 d1e2ta_ not modelled 45.7 16 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Arylamine N-acetyltransferase 82 c3l6dB_ not modelled 42.1 18 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440 83 d1w4ta1 not modelled 39.0 17 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Arylamine N-acetyltransferase 84 d1obba1 not modelled 38.2 27 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 85 c3rhgA_ not modelled 35.5 21 PDB header:hydrolase Chain: A: PDB Molecule:putative phophotriesterase; PDBTitle: crystal structure of amidohydrolase pmi1525 (target efi-500319) from2 proteus mirabilis hi4320 86 c2p10D_ not modelled 33.9 12 PDB header:hydrolase Chain: D: PDB Molecule:mll9387 protein; PDBTitle: crystal structure of a putative phosphonopyruvate hydrolase (mll9387)2 from mesorhizobium loti maff303099 at 2.15 a resolution 87 c3c7cB_ not modelled 27.8 18 PDB header:oxidoreductase Chain: B: PDB Molecule:octopine dehydrogenase; PDBTitle: a structural basis for substrate and stereo selectivity in2 octopine dehydrogenase (odh-nadh-l-arginine) 88 d1s6ya1 not modelled 24.3 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 89 d1hvca_ not modelled 22.3 22 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 90 d1ag9a_ not modelled 21.7 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 91 c3fefB_ not modelled 21.3 15 PDB header:hydrolase Chain: B: PDB Molecule:putative glucosidase lpld; PDBTitle: crystal structure of putative glucosidase lpld from2 bacillus subtilis 92 c1s6yA_ not modelled 19.8 23 PDB header:hydrolase Chain: A: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: 2.3a crystal structure of phospho-beta-glucosidase 93 c3k2gA_ not modelled 19.5 20 PDB header:resiniferatoxin binding protein Chain: A: PDB Molecule:resiniferatoxin-binding, phosphotriesterase- PDBTitle: crystal structure of a resiniferatoxin-binding protein from2 rhodobacter sphaeroides 94 c3d9wA_ not modelled 18.7 16 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure analysis of nocardia farcinica arylamine2 n-acetyltransferase 95 d1ks9a2 not modelled 18.6 30 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 96 c2ofpB_ not modelled 18.2 40 PDB header:oxidoreductase Chain: B: PDB Molecule:ketopantoate reductase; PDBTitle: crystal structure of escherichia coli ketopantoate2 reductase in a ternary complex with nadp+ and pantoate 97 d1o98a1 not modelled 18.2 28 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 98 c1n1uA_ not modelled 18.1 33 PDB header:antibiotic Chain: A: PDB Molecule:kalata b1; PDBTitle: nmr structure of [ala1,15]kalata b1 99 d1n1ua_ not modelled 18.1 33 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Cyclotides Family:Kalata B1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0