Secondary structure and disorder prediction

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Sequence		M	A	K	E	D	N	I	E	M	Q	G	T	V	L	E	T	L	P	N	T	M	F	R	V	E	L	E	N	G	H	V	V	T	A	H	I	S	G	K	M	R	K	N	Y	I	R	I	L	T	G	D	K	V	T	V	E	L	T	P	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.
Sequence		D	L	S	K	G	R	I	V	F	R	S	R
Secondary structure
SS confidence
Disorder												?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ah9 chain A Region: 2 - 72 Aligned: 71 Modelled: 71 Confidence: 100.0% Identity: 100% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 3i4o chain A Region: 6 - 72 Aligned: 67 Modelled: 67 Confidence: 100.0% Identity: 69% PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis Phyre2 PDB 1hr0 chain W Region: 3 - 70 Aligned: 68 Modelled: 68 Confidence: 99.9% Identity: 57% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1jt8 chain A Region: 1 - 71 Aligned: 70 Modelled: 71 Confidence: 99.9% Identity: 24% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1d7q chain A Region: 1 - 71 Aligned: 70 Modelled: 71 Confidence: 99.9% Identity: 24% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2oqk chain A Region: 1 - 71 Aligned: 68 Modelled: 71 Confidence: 99.9% Identity: 31% PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a Phyre2 PDB 2dgy chain A Region: 1 - 71 Aligned: 68 Modelled: 71 Confidence: 99.8% Identity: 26% PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein Phyre2 PDB 1u0l chain A domain 1 Region: 10 - 68 Aligned: 56 Modelled: 59 Confidence: 97.8% Identity: 29% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1t9h chain A domain 1 Region: 10 - 67 Aligned: 55 Modelled: 58 Confidence: 97.5% Identity: 25% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1u0l chain B Region: 7 - 68 Aligned: 59 Modelled: 62 Confidence: 97.2% Identity: 32% PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima Phyre2 PDB 2yv5 chain A Region: 1 - 71 Aligned: 66 Modelled: 69 Confidence: 96.9% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus Phyre2 PDB 2rcn chain A Region: 9 - 68 Aligned: 52 Modelled: 60 Confidence: 96.1% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. Phyre2 PDB 1t9h chain A Region: 10 - 68 Aligned: 56 Modelled: 59 Confidence: 95.5% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. Phyre2 PDB 4a2i chain V Region: 8 - 61 Aligned: 49 Modelled: 54 Confidence: 94.8% Identity: 24% PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor Phyre2 PDB 3fp9 chain E Region: 4 - 58 Aligned: 49 Modelled: 55 Confidence: 93.4% Identity: 20% PDB header:hydrolase Chain: E: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of intern domain of proteasome-associated2 atpase, mycobacterium tuberculosis Phyre2 PDB 2k52 chain A Region: 1 - 72 Aligned: 71 Modelled: 72 Confidence: 91.3% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b Phyre2 PDB 1q46 chain A Region: 1 - 72 Aligned: 69 Modelled: 72 Confidence: 90.9% Identity: 25% PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia Phyre2 PDB 3m9b chain K Region: 1 - 58 Aligned: 57 Modelled: 58 Confidence: 90.5% Identity: 16% PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa Phyre2 PDB 1kl9 chain A domain 2 Region: 4 - 72 Aligned: 61 Modelled: 69 Confidence: 89.2% Identity: 21% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1g29 chain 1 domain 4 Region: 2 - 69 Aligned: 63 Modelled: 68 Confidence: 89.0% Identity: 17% Fold: OB-fold Superfamily: MOP-like Family: ABC-transporter additional domain Phyre2 1 d1ah9a_ 2 c3i4oA_ 3 d1hr0w_ 4 d1jt8a_ 5 d1d7qa_ 6 c2oqkA_ 7 c2dgyA_ 8 d1u0la1 9 d1t9ha1 10 c1u0lB_ 11 c2yv5A_ 12 c2rcnA_ 13 c1t9hA_ 14 c4a2iV_ 15 c3fp9E_ 16 c2k52A_ 17 c1q46A_ 18 c3m9bK_ 19 d1kl9a2 20 d1g2914 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ah9a_ 100.0 100 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 2 c3i4oA_ 100.0 69 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 3 d1hr0w_ 99.9 57 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 4 d1jt8a_ 99.9 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 5 d1d7qa_ 99.9 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 6 c2oqkA_ 99.9 31 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 7 c2dgyA_ 99.8 26 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 8 d1u0la1 97.8 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 9 d1t9ha1 97.5 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 10 c1u0lB_ 97.2 32 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 11 c2yv5A_ 96.9 24 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 12 c2rcnA_ 96.1 29 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 13 c1t9hA_ 95.5 27 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 14 c4a2iV_ 94.8 24 PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor 15 c3fp9E_ 93.4 20 PDB header:hydrolase Chain: E: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of intern domain of proteasome-associated2 atpase, mycobacterium tuberculosis 16 c2k52A_ 91.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 17 c1q46A_ 90.9 25 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia 18 c3m9bK_ 90.5 16 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 19 d1kl9a2 89.2 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 20 d1g2914 89.0 17 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 21 c1zn1L_ not modelled 87.4 30 PDB header:biosynthetic/structural protein/rna Chain: L: PDB Molecule:30s ribosomal protein s12; PDBTitle: coordinates of rrf fitted into cryo-em map of the 70s post-2 termination complex 22 c1xniI_ not modelled 85.0 14 PDB header:cell cycle Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1; PDBTitle: tandem tudor domain of 53bp1 23 d2uubl1 not modelled 84.6 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 24 d1y14b1 not modelled 83.8 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 25 c2r7fA_ not modelled 82.9 15 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease ii family protein; PDBTitle: crystal structure of ribonuclease ii family protein from deinococcus2 radiodurans, hexagonal crystal form. northeast structural genomics3 target drr63 26 c2oceA_ not modelled 82.9 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 27 c1yz6A_ not modelled 82.1 27 PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 alpha PDBTitle: crystal structure of intact alpha subunit of aif2 from2 pyrococcus abyssi 28 d2qall1 not modelled 78.6 33 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 29 c2ix1A_ not modelled 77.5 12 PDB header:hydrolase Chain: A: PDB Molecule:exoribonuclease 2; PDBTitle: rnase ii d209n mutant 30 c2xzmL_ not modelled 77.5 25 PDB header:ribosome Chain: L: PDB Molecule:40s ribosomal protein s12; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 31 c1ssfA_ not modelled 76.5 14 PDB header:cell cycle Chain: A: PDB Molecule:transformation related protein 53 binding PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617) 32 d1i94l_ not modelled 75.8 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 33 c1q8kA_ not modelled 75.7 24 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 2 PDBTitle: solution structure of alpha subunit of human eif2 34 d1go3e1 not modelled 75.3 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 35 c2wp8J_ not modelled 74.8 15 PDB header:hydrolase Chain: J: PDB Molecule:exosome complex exonuclease dis3; PDBTitle: yeast rrp44 nuclease 36 c2khjA_ not modelled 72.2 22 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 37 d2ahob2 not modelled 71.6 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 38 d2g3ra1 not modelled 71.5 14 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 39 c2k4kA_ not modelled 71.3 27 PDB header:rna binding protein Chain: A: PDB Molecule:general stress protein 13; PDBTitle: solution structure of gsp13 from bacillus subtilis 40 c2khiA_ not modelled 71.3 24 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1 41 d1smxa_ not modelled 70.4 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 42 c1kl9A_ not modelled 70.2 19 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 2 subunit 1; PDBTitle: crystal structure of the n-terminal segment of human eukaryotic2 initiation factor 2alpha 43 c2equA_ not modelled 70.1 11 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 44 c1s1hL_ not modelled 68.2 50 PDB header:ribosome Chain: L: PDB Molecule:40s ribosomal protein s23; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 45 c2pmzE_ not modelled 67.8 27 PDB header:translation, transferase Chain: E: PDB Molecule:dna-directed rna polymerase subunit e; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 46 c2c35F_ not modelled 67.5 16 PDB header:polymerase Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii 47 c1go3E_ not modelled 64.7 25 PDB header:transferase Chain: E: PDB Molecule:dna-directed rna polymerase subunit e; PDBTitle: structure of an archeal homolog of the eukaryotic rna2 polymerase ii rpb4/rpb7 complex 48 c2zkql_ not modelled 63.5 44 PDB header:ribosomal protein/rna Chain: L: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 49 c2ahoB_ not modelled 62.1 19 PDB header:translation Chain: B: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: structure of the archaeal initiation factor eif2 alpha-2 gamma heterodimer from sulfolobus solfataricus complexed3 with gdpnp 50 c1h9mB_ not modelled 60.7 13 PDB header:binding protein Chain: B: PDB Molecule:molybdenum-binding-protein; PDBTitle: two crystal structures of the cytoplasmic molybdate-binding2 protein modg suggest a novel cooperative binding mechanism3 and provide insights into ligand-binding specificity.4 peg-grown form with molybdate bound 51 c2b8kG_ not modelled 60.4 14 PDB header:transferase Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: 12-subunit rna polymerase ii 52 d1guta_ not modelled 59.4 18 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 53 c3go5A_ not modelled 58.8 12 PDB header:gene regulation Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains; PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution 54 c3p8dB_ not modelled 56.7 19 PDB header:protein binding Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72; PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form) 55 d1sroa_ not modelled 56.4 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 56 d1b12a_ not modelled 55.4 45 Fold:LexA/Signal peptidase Superfamily:LexA/Signal peptidase Family:Type 1 signal peptidase 57 c3psiA_ not modelled 54.5 7 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) 58 d1q46a2 not modelled 54.0 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 59 c1nt9G_ not modelled 52.9 14 PDB header:transcription, transferase Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kd polypeptide; PDBTitle: complete 12-subunit rna polymerase ii 60 c2wg6L_ not modelled 52.0 18 PDB header:transcription,hydrolase Chain: L: PDB Molecule:general control protein gcn4, PDBTitle: proteasome-activating nucleotidase (pan) n-domain (57-134)2 from archaeoglobus fulgidus fused to gcn4, p61a mutant 61 c3qiiA_ not modelled 51.0 19 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 62 d2nn6g1 not modelled 49.3 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 63 c2qqsB_ not modelled 45.5 16 PDB header:oxidoreductase Chain: B: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide 64 c2l66B_ not modelled 45.4 38 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 65 d1v43a2 not modelled 44.0 18 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 66 c1h9sA_ not modelled 43.9 13 PDB header:transcription regulator Chain: A: PDB Molecule:molybdenum transport protein mode; PDBTitle: molybdate bound complex of dimop domain of mode from e.coli 67 d2z0sa1 not modelled 43.7 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 68 c3bdlA_ not modelled 42.8 29 PDB header:hydrolase Chain: A: PDB Molecule:staphylococcal nuclease domain-containing PDBTitle: crystal structure of a truncated human tudor-sn 69 c2pqaB_ not modelled 41.3 19 PDB header:replication Chain: B: PDB Molecule:replication protein a 14 kda subunit; PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer 70 d1h9ma2 not modelled 40.9 13 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 71 d1h9ma1 not modelled 40.6 16 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 72 c2ba0A_ not modelled 38.8 14 PDB header:rna binding protein Chain: A: PDB Molecule:archeal exosome rna binding protein rrp4; PDBTitle: archaeal exosome core 73 c2bh8B_ not modelled 37.6 18 PDB header:transcription Chain: B: PDB Molecule:1b11; PDBTitle: combinatorial protein 1b11 74 c2nn6G_ not modelled 37.1 15 PDB header:hydrolase/transferase Chain: G: PDB Molecule:exosome complex exonuclease rrp40; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 75 c2eqsA_ not modelled 37.1 15 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dhx8; PDBTitle: solution structure of the s1 rna binding domain of human2 atp-dependent rna helicase dhx8 76 c2z0sA_ not modelled 35.9 12 PDB header:rna binding protein Chain: A: PDB Molecule:probable exosome complex rna-binding protein 1; PDBTitle: crystal structure of putative exosome complex rna-binding2 protein 77 d2pi2e1 not modelled 34.3 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 78 d2nn6i1 not modelled 32.4 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 79 d2gnra1 not modelled 31.0 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 80 c2nn6I_ not modelled 28.2 13 PDB header:hydrolase/transferase Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 81 c2zooA_ not modelled 28.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:probable nitrite reductase; PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125 82 d1e32a1 not modelled 27.9 24 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 83 c3h43F_ not modelled 27.7 18 PDB header:hydrolase Chain: F: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: n-terminal domain of the proteasome-activating nucleotidase2 of methanocaldococcus jannaschii 84 c2xdpA_ not modelled 27.5 14 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 4c; PDBTitle: crystal structure of the tudor domain of human jmjd2c 85 c3h0gS_ not modelled 27.4 15 PDB header:transcription Chain: S: PDB Molecule:dna-directed rna polymerase ii subunit rpb7; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 86 d2ba0a1 not modelled 27.4 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 87 d2grea1 not modelled 26.8 24 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 88 d3d31a1 not modelled 26.4 17 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 89 d2ix0a2 not modelled 25.6 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 90 d1h9ra1 not modelled 25.3 18 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 91 c1hh2P_ not modelled 25.2 13 PDB header:transcription regulation Chain: P: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima 92 c3iz5Y_ not modelled 24.8 27 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 93 d2d9ra1 not modelled 24.7 23 Fold:Double-split beta-barrel Superfamily:AF2212/PG0164-like Family:PG0164-like 94 d1h9ra2 not modelled 24.4 14 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 95 d2je6i1 not modelled 23.2 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 96 d2ja9a1 not modelled 22.3 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 97 d2nn6h1 not modelled 21.2 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 98 c1l2fA_ not modelled 21.0 13 PDB header:transcription Chain: A: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima: a2 structure-based role of the n-terminal domain 99 d1dcza_ not modelled 20.1 28 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0