Email l.a.kelley@imperial.ac.uk Description P77272 Date Thu Jan 5 12:27:05 GMT 2012 Unique Job ID acb318e1dc78ed98

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qnqD_ 100.0 16 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 2 c3ipjB_ 99.9 26 PDB header:transferase Chain: B: PDB Molecule:pts system, iiabc component; PDBTitle: the crystal structure of one domain of the pts system, iiabc component2 from clostridium difficile 3 c1ibaA_ 99.9 34 PDB header:phoshphotransferase Chain: A: PDB Molecule:glucose permease; PDBTitle: glucose permease (domain iib), nmr, 11 structures 4 d3bp8c1 99.8 35 Fold:Homing endonuclease-like Superfamily:Glucose permease domain IIB Family:Glucose permease domain IIB 5 d1i1ga2 50.5 17 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 6 c2voyB_ 42.4 10 PDB header:hydrolase Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 7 d1ciia1 39.1 8 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 8 d2cyya2 37.3 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 9 c3t2lA_ 33.5 9 PDB header:cell adhesion Chain: A: PDB Molecule:putative cell adhesion protein; PDBTitle: crystal structure of a putative cell adhesion protein (bf1858) from2 bacteroides fragilis nctc 9343 at 2.33 a resolution 10 d1rh1a2 29.0 21 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 11 c2pjmA_ 28.4 17 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 12 c3sy6A_ 27.4 29 PDB header:cell adhesion Chain: A: PDB Molecule:fimbrial protein bf1861; PDBTitle: crystal structure of a fimbrial protein bf1861 [bacteroides fragilis2 nctc 9343] (bf1861) from bacteroides fragilis nctc 9343 at 1.90 a3 resolution 13 d2cfxa2 26.8 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 14 d1cola_ 26.7 17 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 15 d2gola1 25.8 28 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Immunodeficiency virus matrix proteins 16 c1vbkA_ 23.9 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 17 c1a0oH_ 23.2 14 PDB header:chemotaxis Chain: H: PDB Molecule:chea; PDBTitle: chey-binding domain of chea in complex with chey 18 d1ffgb_ 23.1 17 Fold:Ferredoxin-like Superfamily:CheY-binding domain of CheA Family:CheY-binding domain of CheA 19 c2djwF_ 23.0 17 PDB header:unknown function Chain: F: PDB Molecule:probable transcriptional regulator, asnc family; PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8 20 c3ibwA_ 22.9 20 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 21 c1lkzB_ not modelled 19.8 25 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 22 c2xv4S_ not modelled 19.7 14 PDB header:transcription Chain: S: PDB Molecule:dna-directed rna polymerase iii subunit rpc3; PDBTitle: structure of human rpc62 (partial) 23 c2e1aD_ not modelled 19.3 8 PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 24 c2pmuD_ not modelled 19.0 16 PDB header:transcription regulation Chain: D: PDB Molecule:response regulator phop; PDBTitle: crystal structure of the dna-binding domain of phop 25 c2i88A_ not modelled 18.5 9 PDB header:membrane protein Chain: A: PDB Molecule:colicin-e1; PDBTitle: crystal structure of the channel-forming domain of colicin2 e1 26 c3ksiA_ not modelled 18.5 9 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure of frmsr of staphylococcus aureus (complex with 2-propanol) 27 c2zbcH_ not modelled 17.2 14 PDB header:transcription Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc; PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7. 28 c2c5sA_ not modelled 16.7 13 PDB header:rna-binding protein Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii; PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain 29 c3l7oB_ not modelled 14.8 17 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 30 d1l6na1 not modelled 14.6 29 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Immunodeficiency virus matrix proteins 31 d1gxqa_ not modelled 14.0 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 32 d1t4za_ not modelled 13.0 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:KaiB-like 33 c2hqnA_ not modelled 12.8 10 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 34 d2cfua2 not modelled 12.6 11 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Alkylsulfatase-like 35 c3kwmC_ not modelled 12.5 16 PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a 36 c1oy8A_ not modelled 12.3 21 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 37 c3ufiA_ not modelled 12.3 8 PDB header:cell adhesion Chain: A: PDB Molecule:hypothetical protein bacova_04980; PDBTitle: crystal structure of a hypothetical protein2 bacova_04980(zp_02067969.1) from bacteroides ovatus atcc 8483 at 2.183 a resolution 38 d1mwza_ not modelled 12.0 22 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 39 c1m6yA_ not modelled 12.0 12 PDB header:transferase Chain: A: PDB Molecule:s-adenosyl-methyltransferase mraw; PDBTitle: crystal structure analysis of tm0872, a putative sam-2 dependent methyltransferase, complexed with sah 40 c2dbbA_ not modelled 12.0 17 PDB header:transcriptional regulator Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061; PDBTitle: crystal structure of ph0061 41 c1lk5C_ not modelled 11.4 19 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 42 d1fpoa2 not modelled 11.1 10 Fold:Open three-helical up-and-down bundle Superfamily:HSC20 (HSCB), C-terminal oligomerisation domain Family:HSC20 (HSCB), C-terminal oligomerisation domain 43 c2cfuA_ not modelled 11.1 11 PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. 44 d1uj4a2 not modelled 10.5 28 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 45 d1vbka2 not modelled 10.5 10 Fold:THUMP domain Superfamily:THUMP domain-like Family:THUMP domain 46 c3hheA_ not modelled 10.3 8 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae 47 d2c5sa2 not modelled 10.0 12 Fold:THUMP domain Superfamily:THUMP domain-like Family:THUMP domain 48 d2cg4a2 not modelled 10.0 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 49 c1uj6A_ not modelled 9.8 10 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 50 d1kgsa1 not modelled 9.7 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 51 c2f8mB_ not modelled 9.6 21 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum 52 d2prra1 not modelled 9.0 14 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 53 d1ilea1 not modelled 8.8 12 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 54 d2ff4a1 not modelled 8.7 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 55 d1qm4a1 not modelled 8.3 12 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 56 d1ry9a_ not modelled 8.2 15 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 57 d1ciya1 not modelled 8.1 29 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 58 c3zqsB_ not modelled 8.1 25 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase fancl; PDBTitle: human fancl central domain 59 d2bgwa1 not modelled 7.9 23 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 60 d1ivsa2 not modelled 7.7 22 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 61 d1ji6a1 not modelled 7.7 36 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 62 d1kona_ not modelled 7.7 9 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 63 d1fzda_ not modelled 7.4 17 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 64 d1qupa2 not modelled 7.4 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 65 c2j61B_ not modelled 7.4 26 PDB header:lectin Chain: B: PDB Molecule:ficolin-2; PDBTitle: l-ficolin complexed to n-acetylglucosamine (forme c) 66 c2kscA_ not modelled 7.3 13 PDB header:unknown function Chain: A: PDB Molecule:cyanoglobin; PDBTitle: solution structure of synechococcus sp. pcc 7002 hemoglobin 67 c2janD_ not modelled 7.1 19 PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state 68 d1ffya1 not modelled 7.0 12 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 69 c3n0uB_ not modelled 6.9 21 PDB header:hydrolase, lyase Chain: B: PDB Molecule:probable n-glycosylase/dna lyase; PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima 70 d1iq0a3 not modelled 6.9 9 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Family:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 71 c2kyzA_ not modelled 6.8 24 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima 72 d1wi9a_ not modelled 6.8 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 73 c2ifoA_ not modelled 6.7 25 PDB header:virus Chain: A: PDB Molecule:inovirus; PDBTitle: model-building studies of inovirus: genetic variations on a2 geometric theme 74 c2i9sA_ not modelled 6.7 16 PDB header:chaperone Chain: A: PDB Molecule:mesoderm development candidate 2; PDBTitle: the solution structure of the core of mesoderm development2 (mesd). 75 d1ngka_ not modelled 6.6 16 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 76 d1o8ba2 not modelled 6.6 24 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 77 d1m0sa2 not modelled 6.6 10 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 78 c3mahA_ not modelled 6.6 15 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: a putative c-terminal regulatory domain of aspartate kinase from2 porphyromonas gingivalis w83. 79 d1lwub1 not modelled 6.5 13 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 80 d2o3aa1 not modelled 6.5 27 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF0751-like 81 d1tama_ not modelled 6.5 27 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Immunodeficiency virus matrix proteins 82 d1m1ha2 not modelled 6.5 13 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 83 c2kddB_ not modelled 6.4 19 PDB header:cell cycle Chain: B: PDB Molecule:borealin; PDBTitle: solution structure of the conserved c-terminal dimerization2 domain of borealin 84 d1jkva_ not modelled 6.4 5 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 85 d1m1jc1 not modelled 6.3 30 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 86 d1s69a_ not modelled 6.3 13 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 87 d1rzsa_ not modelled 6.3 7 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 88 d1lk5a2 not modelled 6.2 19 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 89 c3aq8A_ not modelled 6.2 22 PDB header:oxygen binding Chain: A: PDB Molecule:group 1 truncated hemoglobin; PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form 90 c3ofgA_ not modelled 6.2 13 PDB header:chaperone Chain: A: PDB Molecule:boca/mesd chaperone for ywtd beta-propeller-egf protein 1; PDBTitle: structured domain of caenorhabditis elegans bmy-1 91 c2e1cA_ not modelled 6.2 14 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 92 d1hiwa_ not modelled 6.1 29 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Immunodeficiency virus matrix proteins 93 c3ofeB_ not modelled 6.1 19 PDB header:chaperone Chain: B: PDB Molecule:ldlr chaperone boca; PDBTitle: structured domain of drosophila melanogaster boca p41 2 2 crystal form 94 c1m0sA_ not modelled 6.0 17 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 95 c3dxsX_ not modelled 5.9 26 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 96 c1ph4A_ not modelled 5.9 21 PDB header:dna binding protein/dna Chain: A: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: crystal structure of the oxytricha nova telomere end-binding protein2 complexed with noncognate ssdna ggggttttggcg 97 c1jb7A_ not modelled 5.9 21 PDB header:dna-binding protein/dna Chain: A: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: dna g-quartets in a 1.86 a resolution structure of an oxytricha nova2 telomeric protein-dna complex 98 d1vr6a1 not modelled 5.9 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 99 c1vcnA_ not modelled 5.9 13 PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion