Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	C	E	H	H	H	A	A	K	H	I	L	C	S	Q	C	D	M	L	V	A	L	P	R	L	E	H	G	Q	K	A	A	C	P	R	C	G	T	T	L	T	V	A	W	D	A	P	R	Q	R	P	T	A	Y	A	L	A	A	L	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																		?	?	?	?														?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	L	L	L	S	N	L	F	P	F	V	N	M	N	V	A	G	V	T	S	E	I	T	L	L	E	I	P	G	V	L	F	S	E	D	Y	A	S	L	G	T	F	F	L	L	F	V	Q	L	V	P	A	F	C	L	I	T	I	L	L
Secondary structure
SS confidence
Disorder														?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	V	N	R	A	E	L	P	V	R	L	K	E	Q	L	A	R	V	L	F	Q	L	K	T	W	G	M	A	E	I	F	L	A	G	V	L	V	S	F	V	K	L	M	A	Y	G	S	I	G	V	G	S	S	F	L	P	W	C	L	F
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?																																			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		C	V	L	Q	L	R	A	F	Q	C	V	D	R	R	W	L	W	D	D	I	A	P	M	P	E	L	R	Q	P	L	K	P	G	V	T	G	I	R	Q	G	L	R	S	C	S	C	C	T	A	I	L	P	A	D	E	P	V	C	P	R
Secondary structure
SS confidence
Disorder																							?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		C	S	T	K	G	Y	V	R	R	R	N	S	L	Q	W	T	L	A	L	L	V	T	S	I	M	L	Y	L	P	A	N	I	L	P	I	M	V	T	D	L	L	G	S	K	M	P	S	T	I	L	A	G	V	I	L	L	W	S	E	G
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		S	Y	P	V	A	A	V	I	F	L	A	S	I	M	V	P	T	L	K	M	I	A	I	A	W	L	C	W	D	A	K	G	H	G	K	R	D	S	E	R	M	H	L	I	Y	E	V	V	E	F	V	G	R	W	S	M	I	D	V	F
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Sequence		V	I	A	V	L	S	A	L	V	R	M	G	G	L	M	S	I	Y	P	A	M	G	A	L	M	F	A	L	V	V	I	M	T	M	F	S	A	M	T	F	D	P	R	L	S	W	D	R	Q	P	E	S	E	H	E	E	S
Secondary structure
SS confidence
Disorder																	?																																	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ppt chain A Region: 10 - 49 Aligned: 40 Modelled: 40 Confidence: 94.9% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 Phyre2 PDB 1aky chain A domain 2 Region: 12 - 46 Aligned: 35 Modelled: 35 Confidence: 92.4% Identity: 9% Fold: Rubredoxin-like Superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain Family: Microbial and mitochondrial ADK, insert "zinc finger" domain Phyre2 PDB 2ak3 chain A domain 2 Region: 12 - 45 Aligned: 34 Modelled: 34 Confidence: 92.1% Identity: 9% Fold: Rubredoxin-like Superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain Family: Microbial and mitochondrial ADK, insert "zinc finger" domain Phyre2 PDB 1p3j chain A domain 2 Region: 12 - 43 Aligned: 32 Modelled: 32 Confidence: 91.9% Identity: 22% Fold: Rubredoxin-like Superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain Family: Microbial and mitochondrial ADK, insert "zinc finger" domain Phyre2 PDB 1zin chain A domain 2 Region: 12 - 43 Aligned: 32 Modelled: 32 Confidence: 91.7% Identity: 22% Fold: Rubredoxin-like Superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain Family: Microbial and mitochondrial ADK, insert "zinc finger" domain Phyre2 PDB 1s3g chain A domain 2 Region: 12 - 43 Aligned: 32 Modelled: 32 Confidence: 91.6% Identity: 19% Fold: Rubredoxin-like Superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain Family: Microbial and mitochondrial ADK, insert "zinc finger" domain Phyre2 PDB 2lcq chain A Region: 224 - 250 Aligned: 27 Modelled: 27 Confidence: 90.5% Identity: 33% PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii Phyre2 PDB 1e4v chain A domain 2 Region: 12 - 43 Aligned: 32 Modelled: 32 Confidence: 90.1% Identity: 9% Fold: Rubredoxin-like Superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain Family: Microbial and mitochondrial ADK, insert "zinc finger" domain Phyre2 PDB 2kdx chain A Region: 5 - 38 Aligned: 31 Modelled: 34 Confidence: 89.0% Identity: 13% PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein Phyre2 PDB 3a44 chain D Region: 5 - 38 Aligned: 34 Modelled: 34 Confidence: 88.9% Identity: 24% PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form Phyre2 PDB 1k3x chain A domain 3 Region: 13 - 38 Aligned: 26 Modelled: 26 Confidence: 88.1% Identity: 23% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins Phyre2 PDB 2gmg chain A domain 1 Region: 13 - 39 Aligned: 24 Modelled: 27 Confidence: 87.0% Identity: 21% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: PF0610-like Phyre2 PDB 2f9i chain D Region: 10 - 40 Aligned: 30 Modelled: 31 Confidence: 86.7% Identity: 17% PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus Phyre2 PDB 2gb5 chain B Region: 13 - 43 Aligned: 29 Modelled: 31 Confidence: 86.6% Identity: 14% PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution Phyre2 PDB 1ee8 chain A domain 3 Region: 13 - 39 Aligned: 27 Modelled: 27 Confidence: 86.4% Identity: 22% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins Phyre2 PDB 1dl6 chain A Region: 6 - 43 Aligned: 37 Modelled: 38 Confidence: 86.0% Identity: 19% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 3lpe chain F Region: 221 - 251 Aligned: 29 Modelled: 31 Confidence: 85.8% Identity: 21% PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii Phyre2 PDB 1yuz chain B Region: 224 - 244 Aligned: 21 Modelled: 21 Confidence: 84.9% Identity: 29% PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin Phyre2 PDB 1pft chain A Region: 9 - 43 Aligned: 34 Modelled: 35 Confidence: 84.8% Identity: 24% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 2dkt chain A domain 1 Region: 1 - 39 Aligned: 32 Modelled: 39 Confidence: 84.7% Identity: 25% Fold: CHY zinc finger-like Superfamily: CHY zinc finger-like Family: CHY zinc finger Phyre2 PDB 2ayj chain A domain 1 Region: 203 - 244 Aligned: 42 Modelled: 42 Confidence: 83.8% Identity: 24% Fold: Rubredoxin-like Superfamily: Zn-binding ribosomal proteins Family: Ribosomal protein L40e Phyre2 1 c2pptA_ 2 d1akya2 3 d2ak3a2 4 d1p3ja2 5 d1zina2 6 d1s3ga2 7 c2lcqA_ 8 d1e4va2 9 c2kdxA_ 10 c3a44D_ 11 d1k3xa3 12 d2gmga1 13 c2f9iD_ 14 c2gb5B_ 15 d1ee8a3 16 d1dl6a_ 17 c3lpeF_ 18 c1yuzB_ 19 d1pfta_ 20 d2dkta1 21 22 23 24 d2ayja1 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2pptA_ 94.9 20 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 2 d1akya2 92.4 9 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 3 d2ak3a2 92.1 9 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 4 d1p3ja2 91.9 22 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 5 d1zina2 91.7 22 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 6 d1s3ga2 91.6 19 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 7 c2lcqA_ 90.5 33 PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii 8 d1e4va2 90.1 9 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 9 c2kdxA_ 89.0 13 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 10 c3a44D_ 88.9 24 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 11 d1k3xa3 88.1 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 12 d2gmga1 87.0 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 13 c2f9iD_ 86.7 17 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 14 c2gb5B_ 86.6 14 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 15 d1ee8a3 86.4 22 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 16 d1dl6a_ 86.0 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 17 c3lpeF_ 85.8 21 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 18 c1yuzB_ 84.9 29 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 19 d1pfta_ 84.8 24 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 20 d2dkta1 84.7 25 Fold:CHY zinc finger-like Superfamily:CHY zinc finger-like Family:CHY zinc finger 21 d1yc5a1 not modelled 84.5 19 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 22 c3k7aM_ not modelled 84.2 18 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 23 d1tdza3 not modelled 83.9 22 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 24 d2ayja1 83.8 24 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L40e 25 d1m2ka_ not modelled 82.6 19 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 26 d1lkoa2 not modelled 82.4 21 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 27 d2j0151 not modelled 82.4 21 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 28 d2zjrz1 not modelled 82.1 28 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 29 d1k82a3 not modelled 82.0 16 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 30 d1l1ta3 not modelled 81.8 24 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 31 c2f9yB_ not modelled 81.6 22 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli 32 d2f9yb1 not modelled 81.6 22 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 33 c3glsC_ not modelled 81.5 16 PDB header:hydrolase Chain: C: PDB Molecule:nad-dependent deacetylase sirtuin-3, PDBTitle: crystal structure of human sirt3 34 d1ryqa_ not modelled 81.3 28 Fold:Rubredoxin-like Superfamily:RNA polymerase subunits Family:RpoE2-like 35 d1r2za3 not modelled 80.6 24 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 36 c3k35D_ not modelled 79.0 18 PDB header:hydrolase Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: crystal structure of human sirt6 37 c2ja6L_ not modelled 78.7 27 PDB header:transferase Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 PDBTitle: cpd lesion containing rna polymerase ii elongation complex2 b 38 d2ct7a1 not modelled 78.4 30 Fold:RING/U-box Superfamily:RING/U-box Family:IBR domain 39 d1qxfa_ not modelled 78.0 17 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27e 40 c3p2aB_ not modelled 76.8 29 PDB header:oxidoreductase Chain: B: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis 41 d1yuza2 not modelled 76.3 35 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 42 c2odxA_ not modelled 76.2 14 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase polypeptide iv; PDBTitle: solution structure of zn(ii)cox4 43 c1dvbA_ not modelled 76.0 29 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 44 d1q1aa_ not modelled 76.0 23 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 45 c2hr5B_ not modelled 75.6 24 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 46 d2dsxa1 not modelled 75.0 30 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 47 d2gnra1 not modelled 75.0 33 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 48 c1i3qI_ not modelled 74.3 15 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 49 c3h0gL_ not modelled 74.0 23 PDB header:transcription Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 50 d6rxna_ not modelled 73.8 27 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 51 c2x5cB_ not modelled 73.8 60 PDB header:viral protein Chain: B: PDB Molecule:hypothetical protein orf131; PDBTitle: crystal structure of hypothetical protein orf131 from2 pyrobaculum spherical virus 52 d4rxna_ not modelled 73.6 26 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 53 d1qcva_ not modelled 73.5 11 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 54 d2k4xa1 not modelled 73.3 28 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27a 55 d2apob1 not modelled 73.3 24 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 56 d2ey4e1 not modelled 73.2 31 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 57 c3axtA_ not modelled 72.9 25 PDB header:transferase Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine 58 d1iroa_ not modelled 72.6 26 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 59 c2aklA_ not modelled 72.2 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 60 d2akla2 not modelled 72.2 32 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain 61 c3pkiF_ not modelled 71.8 18 PDB header:hydrolase Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: human sirt6 crystal structure in complex with adp ribose 62 d1s24a_ not modelled 70.8 26 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 63 c1s24A_ not modelled 70.8 26 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin 2; PDBTitle: rubredoxin domain ii from pseudomonas oleovorans 64 c3cngC_ not modelled 70.1 34 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 65 d1nnqa2 not modelled 69.5 30 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 66 d1weoa_ not modelled 69.4 21 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 67 c1q14A_ not modelled 69.3 22 PDB header:hydrolase Chain: A: PDB Molecule:hst2 protein; PDBTitle: structure and autoregulation of the yeast hst2 homolog of sir2 68 c3iz6X_ not modelled 69.2 20 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein s27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 69 c2kn9A_ not modelled 68.9 30 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin; PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a 70 d2qam01 not modelled 67.3 4 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 71 d1iu5a_ not modelled 67.1 30 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 72 c3p2aA_ not modelled 66.7 26 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis 73 d1dx8a_ not modelled 66.1 19 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 74 c2v3bB_ not modelled 65.6 22 PDB header:oxidoreductase Chain: B: PDB Molecule:rubredoxin 2; PDBTitle: crystal structure of the electron transfer complex2 rubredoxin - rubredoxin reductase from pseudomonas3 aeruginosa. 75 d2fiya1 not modelled 65.1 13 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 76 c3izbX_ not modelled 65.0 17 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein rps27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 77 d1h7va_ not modelled 64.8 19 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 78 d2cona1 not modelled 62.3 24 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 79 c2xzm6_ not modelled 62.0 17 PDB header:ribosome Chain: 6: PDB Molecule:rps27e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 80 c3jwpA_ not modelled 62.0 18 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein sir2 homologue; PDBTitle: crystal structure of plasmodium falciparum sir2a (pf13_0152) in2 complex with amp 81 d2rdva_ not modelled 61.8 22 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 82 c1hk8A_ not modelled 61.6 24 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 83 d1hk8a_ not modelled 61.6 24 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 84 c3h7hA_ not modelled 60.9 26 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt4; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 85 d1ibia1 not modelled 60.2 40 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 86 c3floD_ not modelled 59.9 18 PDB header:transferase Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit 87 c2pziA_ not modelled 59.5 31 PDB header:transferase Chain: A: PDB Molecule:probable serine/threonine-protein kinase pkng; PDBTitle: crystal structure of protein kinase pkng from mycobacterium2 tuberculosis in complex with tetrahydrobenzothiophene ax20017 88 c3gn5B_ not modelled 59.3 17 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 89 d1rb9a_ not modelled 59.3 22 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 90 d1brfa_ not modelled 57.0 28 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 91 c3na7A_ not modelled 55.5 30 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 92 d1ctla1 not modelled 55.3 43 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 93 c2yucA_ not modelled 54.7 26 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor-associated factor 4; PDBTitle: solution structure of the traf-type zinc finger domains2 (102-164) from human tnf receptor associated factor 4 94 c2bx9J_ not modelled 54.5 24 PDB header:transcription regulation Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions 95 c3g9yA_ not modelled 53.2 28 PDB header:transcription/rna Chain: A: PDB Molecule:zinc finger ran-binding domain-containing protein 2; PDBTitle: crystal structure of the second zinc finger from zranb2/znf265 bound2 to 6 nt ssrna sequence agguaa 96 d1x6ma_ not modelled 52.9 19 Fold:Mss4-like Superfamily:Mss4-like Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa 97 c3h0gI_ not modelled 52.8 18 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 98 c2lk0A_ not modelled 52.5 24 PDB header:rna binding protein Chain: A: PDB Molecule:rna-binding protein 5; PDBTitle: solution structure and binding studies of the ranbp2-type zinc finger2 of rbm5 99 d1pfva3 not modelled 50.7 33 Fold:Rubredoxin-like Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain Family:Methionyl-tRNA synthetase (MetRS), Zn-domain 100 d1p91a_ not modelled 50.6 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA 101 c2jrpA_ not modelled 49.6 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 102 d2jnea1 not modelled 48.9 43 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 103 c2jneA_ not modelled 48.9 43 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 104 c2d9kA_ not modelled 48.7 23 PDB header:immune system Chain: A: PDB Molecule:fln29 gene product; PDBTitle: solution structure of the zf-traf domain of fln29 gene2 product 105 d1dgsa1 not modelled 47.6 55 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 106 d1ma3a_ not modelled 46.7 21 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 107 d2ct1a1 not modelled 45.9 38 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 108 d1j8fa_ not modelled 45.4 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 109 c3tsuA_ not modelled 45.3 45 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 110 d2pk7a1 not modelled 44.2 15 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 111 c2js4A_ not modelled 44.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 112 c3ir9A_ not modelled 43.3 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:peptide chain release factor subunit 1; PDBTitle: c-terminal domain of peptide chain release factor from2 methanosarcina mazei. 113 d2hf1a1 not modelled 43.1 15 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 114 c2jr6A_ not modelled 42.5 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 115 c2y69S_ not modelled 42.2 50 PDB header:electron transport Chain: S: PDB Molecule:cytochrome c oxidase subunit 5b; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 116 c2hjhB_ not modelled 41.0 11 PDB header:hydrolase Chain: B: PDB Molecule:nad-dependent histone deacetylase sir2; PDBTitle: crystal structure of the sir2 deacetylase 117 d2jnya1 not modelled 40.9 20 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 118 c1ltlE_ not modelled 40.6 22 PDB header:replication Chain: E: PDB Molecule:dna replication initiator (cdc21/cdc54); PDBTitle: the dodecamer structure of mcm from archaeal m.2 thermoautotrophicum 119 c3ld0Q_ not modelled 40.1 21 PDB header:gene regulation Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa; PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions 120 c2yqqA_ not modelled 40.0 23 PDB header:protein binding Chain: A: PDB Molecule:zinc finger hit domain-containing protein 3; PDBTitle: solution structure of the zf-hit domain in zinc finger hit2 domain-containing protein 3 (trip-3)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0