Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	D	F	S	K	V	V	D	R	H	G	T	W	C	T	Q	W	D	Y	V	A	D	R	F	G	T	A	D	L	L	P	F	T	I	S	D	M	D	F	A	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	S	R	W	K	N	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	T	V	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	S	E	T	G	E	G	V	V	I	H	T	P	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K	L	E	A	V	L	A	K	P	E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Y	I	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Sequence		R	G	F	V	R	L	N	A	G	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V	R
Secondary structure
SS confidence
Disorder																														?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3dzz chain B Region: 2 - 389 Aligned: 380 Modelled: 388 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution Phyre2 PDB 1c7n chain A Region: 1 - 390 Aligned: 388 Modelled: 390 Confidence: 100.0% Identity: 27% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Cystathionine synthase-like Phyre2 PDB 3l8a chain B Region: 2 - 388 Aligned: 381 Modelled: 384 Confidence: 100.0% Identity: 29% PDB header:lyase Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase; PDBTitle: crystal structure of metc from streptococcus mutans Phyre2 PDB 1d2f chain B Region: 25 - 390 Aligned: 366 Modelled: 366 Confidence: 100.0% Identity: 99% PDB header:transferase Chain: B: PDB Molecule:maly protein; PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression Phyre2 PDB 3fdb chain A Region: 3 - 388 Aligned: 371 Modelled: 378 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase; PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution Phyre2 PDB 1d2f chain A Region: 30 - 390 Aligned: 361 Modelled: 361 Confidence: 100.0% Identity: 100% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Cystathionine synthase-like Phyre2 PDB 3kax chain B Region: 17 - 386 Aligned: 363 Modelled: 370 Confidence: 100.0% Identity: 30% PDB header:lyase Chain: B: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis Phyre2 PDB 3g0t chain A Region: 19 - 388 Aligned: 362 Modelled: 368 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution Phyre2 PDB 2r5e chain A domain 1 Region: 2 - 388 Aligned: 382 Modelled: 387 Confidence: 100.0% Identity: 19% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: AAT-like Phyre2 PDB 2o0r chain A Region: 6 - 387 Aligned: 376 Modelled: 382 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis Phyre2 PDB 1xi9 chain A Region: 15 - 388 Aligned: 371 Modelled: 374 Confidence: 100.0% Identity: 17% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: AAT-like Phyre2 PDB 3h14 chain A Region: 2 - 388 Aligned: 357 Modelled: 379 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi Phyre2 PDB 3e2y chain B Region: 18 - 384 Aligned: 364 Modelled: 367 Confidence: 100.0% Identity: 18% PDB header:transferase, lyase Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3; PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine Phyre2 PDB 3b46 chain B Region: 27 - 389 Aligned: 360 Modelled: 363 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:aminotransferase bna3; PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae Phyre2 PDB 1w7l chain A Region: 6 - 388 Aligned: 380 Modelled: 383 Confidence: 100.0% Identity: 17% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: AAT-like Phyre2 PDB 1u08 chain A Region: 12 - 384 Aligned: 365 Modelled: 373 Confidence: 100.0% Identity: 18% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: AAT-like Phyre2 PDB 1j32 chain A Region: 19 - 389 Aligned: 363 Modelled: 369 Confidence: 100.0% Identity: 19% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: AAT-like Phyre2 PDB 1ynu chain A Region: 26 - 388 Aligned: 359 Modelled: 363 Confidence: 100.0% Identity: 17% PDB header:lyase Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase; PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine Phyre2 PDB 3eib chain B Region: 2 - 388 Aligned: 373 Modelled: 387 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana Phyre2 PDB 1iay chain A Region: 26 - 390 Aligned: 361 Modelled: 365 Confidence: 100.0% Identity: 15% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: GABA-aminotransferase-like Phyre2 1 c3dzzB_ 2 d1c7na_ 3 c3l8aB_ 4 c1d2fB_ 5 c3fdbA_ 6 d1d2fa_ 7 c3kaxB_ 8 c3g0tA_ 9 d2r5ea1 10 c2o0rA_ 11 d1xi9a_ 12 c3h14A_ 13 c3e2yB_ 14 c3b46B_ 15 d1w7la_ 16 d1u08a_ 17 d1j32a_ 18 c1ynuA_ 19 c3eibB_ 20 d1iaya_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3dzzB_ 100.0 30 PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution 2 d1c7na_ 100.0 27 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 3 c3l8aB_ 100.0 29 PDB header:lyase Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase; PDBTitle: crystal structure of metc from streptococcus mutans 4 c1d2fB_ 100.0 99 PDB header:transferase Chain: B: PDB Molecule:maly protein; PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression 5 c3fdbA_ 100.0 26 PDB header:transferase Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase; PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution 6 d1d2fa_ 100.0 100 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 7 c3kaxB_ 100.0 30 PDB header:lyase Chain: B: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis 8 c3g0tA_ 100.0 15 PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution 9 d2r5ea1 100.0 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 10 c2o0rA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis 11 d1xi9a_ 100.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 12 c3h14A_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi 13 c3e2yB_ 100.0 18 PDB header:transferase, lyase Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3; PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine 14 c3b46B_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:aminotransferase bna3; PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae 15 d1w7la_ 100.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 16 d1u08a_ 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 17 d1j32a_ 100.0 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 18 c1ynuA_ 100.0 17 PDB header:lyase Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase; PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine 19 c3eibB_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana 20 d1iaya_ 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 21 d1gdea_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 22 d1m7ya_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 23 c3if2B_ not modelled 100.0 15 PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution 24 c3qguB_ not modelled 100.0 15 PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii 25 c2o1bA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class i; PDBTitle: structure of aminotransferase from staphylococcus aureus 26 c3eleB_ not modelled 100.0 16 PDB header:transferase Chain: B: PDB Molecule:amino transferase; PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution 27 d1o4sa_ not modelled 100.0 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 28 c3nraA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution 29 d1bw0a_ not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 30 d1b5pa_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 31 c2zc0C_ not modelled 100.0 15 PDB header:transferase Chain: C: PDB Molecule:alanine glyoxylate transaminase; PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase 32 c3ihjA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp 33 c3pplB_ not modelled 100.0 17 PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution 34 c3jtxB_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution 35 c2x5dD_ not modelled 100.0 19 PDB header:transferase Chain: D: PDB Molecule:probable aminotransferase; PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa 36 c3ezsB_ not modelled 100.0 17 PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution 37 d1vp4a_ not modelled 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 38 c3asaA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis 39 d2gb3a1 not modelled 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 40 d1x0ma1 not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 41 d1wsta1 not modelled 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 42 c2douA_ not modelled 100.0 21 PDB header:transferase Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase; PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8 43 c3t18D_ not modelled 100.0 14 PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. 44 c2z61A_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:probable aspartate aminotransferase 2; PDBTitle: crystal structure of mj0684 from methanococcus jannaschii2 reveals its similarity in the active site to kynurenine3 aminotransferases 45 c2x5fB_ not modelled 100.0 13 PDB header:transferase Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5' PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase 46 c3dydB_ not modelled 100.0 16 PDB header:transferase Chain: B: PDB Molecule:tyrosine aminotransferase; PDBTitle: human tyrosine aminotransferase 47 c3pdxA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:tyrosine aminotransferase; PDBTitle: crystal structural of mouse tyrosine aminotransferase 48 c3dc1A_ not modelled 100.0 13 PDB header:transferase Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate 49 c3g7qA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:valine-pyruvate aminotransferase; PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution 50 d2csta_ not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 51 d1v2da_ not modelled 100.0 20 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 52 c3ez1A_ not modelled 100.0 13 PDB header:transferase Chain: A: PDB Molecule:aminotransferase mocr family; PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution 53 d1ajsa_ not modelled 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 54 c3rq1A_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula 55 c2zy3A_ not modelled 100.0 13 PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase 56 c3k7yA_ not modelled 100.0 13 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum 57 c3cbfA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:alpha-aminodipate aminotransferase; PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27 58 d7aata_ not modelled 100.0 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 59 d2ay1a_ not modelled 100.0 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 60 d2q7wa1 not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 61 c3op7A_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution 62 d1yaaa_ not modelled 100.0 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 63 c3d6kB_ not modelled 100.0 15 PDB header:transferase Chain: B: PDB Molecule:putative aminotransferase; PDBTitle: the crystal structure of a putative aminotransferase from2 corynebacterium diphtheriae 64 c3ly1C_ not modelled 100.0 14 PDB header:transferase Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution 65 d1lc5a_ not modelled 100.0 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 66 c3getA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution 67 c3f6tA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution 68 c3cq6E_ not modelled 100.0 14 PDB header:transferase Chain: E: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound ) 69 c3bwnF_ not modelled 100.0 17 PDB header:transferase Chain: F: PDB Molecule:l-tryptophan aminotransferase; PDBTitle: l-tryptophan aminotransferase 70 c3mebB_ not modelled 100.0 11 PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia 71 d3tata_ not modelled 100.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 72 c3eucB_ not modelled 100.0 13 PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2; PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution 73 d1fg7a_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 74 c3ftbA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum 75 c3hdoB_ not modelled 100.0 15 PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens 76 d2f8ja1 not modelled 100.0 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 77 c3ffhA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262. 78 d2hoxa1 not modelled 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 79 c3fkdC_ not modelled 100.0 15 PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis 80 c3p1tB_ not modelled 100.0 14 PDB header:transferase Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution 81 d2aeua1 not modelled 100.0 9 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SelA-like 82 c3nnkC_ not modelled 100.0 10 PDB header:transferase Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase; PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway 83 c3f0hA_ not modelled 100.0 10 PDB header:transferase Chain: A: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution 84 d1tpla_ not modelled 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases 85 c3hqtB_ not modelled 100.0 13 PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa 86 d1vjoa_ not modelled 100.0 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 87 c2dkjB_ not modelled 100.0 11 PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase 88 c2z9wA_ not modelled 100.0 13 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal 89 d1m6sa_ not modelled 100.0 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 90 d1v72a1 not modelled 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 91 c2huuA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:alanine glyoxylate aminotransferase; PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine 92 c3islA_ not modelled 100.0 12 PDB header:transferase Chain: A: PDB Molecule:purine catabolism protein pucg; PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis 93 d1b9ha_ not modelled 100.0 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 94 c2ordA_ not modelled 100.0 12 PDB header:transferase Chain: A: PDB Molecule:acetylornithine aminotransferase; PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution 95 c3a2bA_ not modelled 100.0 11 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine 96 c3i4jC_ not modelled 100.0 12 PDB header:transferase Chain: C: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans 97 c2po3B_ not modelled 100.0 14 PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product 98 d1eg5a_ not modelled 100.0 7 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 99 d1svva_ not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 100 c2eh6A_ not modelled 100.0 13 PDB header:transferase Chain: A: PDB Molecule:acetylornithine aminotransferase; PDBTitle: crystal structure of acetylornithine aminotransferase from aquifex2 aeolicus vf5 101 d1kl1a_ not modelled 100.0 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 102 c3nx3A_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:acetylornithine aminotransferase; PDBTitle: crystal structure of acetylornithine aminotransferase (argd) from2 campylobacter jejuni 103 c3tqxA_ not modelled 100.0 11 PDB header:transferase Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase; PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii 104 c2yrrA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class v; PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8 105 d1bs0a_ not modelled 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 106 d1vefa1 not modelled 100.0 11 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 107 c2w8wA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser 108 d1h0ca_ not modelled 100.0 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 109 d2ch1a1 not modelled 100.0 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 110 c3mc6C_ not modelled 100.0 9 PDB header:lyase Chain: C: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of scdpl1 111 d2bwna1 not modelled 100.0 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 112 d1fc4a_ not modelled 100.0 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 113 d1dfoa_ not modelled 100.0 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 114 c2dr1A_ not modelled 100.0 10 PDB header:transferase Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3 115 d1sffa_ not modelled 100.0 10 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 116 d1jf9a_ not modelled 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 117 c3ffrA_ not modelled 100.0 10 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase serc; PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution 118 d1t3ia_ not modelled 100.0 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 119 d2cfba1 not modelled 100.0 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 120 d1c7ga_ not modelled 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0