Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77147
DateThu Jan 5 12:25:38 GMT 2012
Unique Job IDa3d03d3d8bd08349

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1ygvA_
Top template information
PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment
Confidence and coverage
Confidence: 99.2% Coverage: 76%
204 residues ( 76% of your sequence) have been modelled with 99.2% confidence by the single highest scoring template.
Warning: 65% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MIITQADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLA
Secondary structure 















SS confidence 



























































Disorder  ????
























?
























??
??
Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  DENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGY
Secondary structure 



























































SS confidence 



























































Disorder  ????????????????????
???????????????????
??
?
???
??????????
Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  SVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVAS
Secondary structure 



























































SS confidence 



























































Disorder  ??????????
?


?????????????????????????????????

??????????
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   .........190.........200.........210.........220.........230.........240
Sequence  NGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGER
Secondary structure 
























































SS confidence 



























































Disorder  ???????????????
???
??



??
????

??
???????????????






Disorder confidence 



























































 
   .........250.........260.........270
Sequence  VRFAVAIEGENNIRAGVRYRLNEQHQFVEC
Secondary structure 


















SS confidence 





























Disorder  ?

?
????????









?
?
???
Disorder confidence 





























 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1ygv chain A

3D model

Region: 61 - 268
Aligned: 204
Modelled: 208
Confidence: 99.2%
Identity: 13%
PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment

Phyre2

PDB 1y0f chain B

3D model

Region: 64 - 239
Aligned: 172
Modelled: 173
Confidence: 98.8%
Identity: 13%
PDB header:structural protein/contractile protein
Chain: B: PDB Molecule:collagen i alpha 2;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule

Phyre2

PDB 2qub chain G

3D model

Region: 77 - 256
Aligned: 179
Modelled: 180
Confidence: 97.7%
Identity: 13%
PDB header:hydrolase
Chain: G: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens

Phyre2

PDB 2zj6 chain A

3D model

Region: 77 - 253
Aligned: 175
Modelled: 177
Confidence: 97.7%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase

Phyre2

PDB 1sat chain A

3D model

Region: 80 - 220
Aligned: 141
Modelled: 141
Confidence: 97.0%
Identity: 16%
PDB header:hydrolase (serine protease)
Chain: A: PDB Molecule:serratia protease;
PDBTitle: crystal structure of the 50 kda metallo protease from s.2 marcescens

Phyre2

PDB 3bog chain B

3D model

Region: 77 - 154
Aligned: 77
Modelled: 78
Confidence: 96.6%
Identity: 13%
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate

Phyre2

PDB 3bog chain A

3D model

Region: 77 - 154
Aligned: 77
Modelled: 78
Confidence: 96.6%
Identity: 13%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate

Phyre2

PDB 2pne chain A

3D model

Region: 99 - 181
Aligned: 81
Modelled: 83
Confidence: 96.5%
Identity: 14%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: crystal structure of the snow flea antifreeze protein

Phyre2

PDB 3boi chain B

3D model

Region: 99 - 181
Aligned: 81
Modelled: 83
Confidence: 96.5%
Identity: 14%
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate

Phyre2

PDB 3boi chain A

3D model

Region: 99 - 181
Aligned: 81
Modelled: 83
Confidence: 96.5%
Identity: 14%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate

Phyre2

PDB 1kap chain P domain 1

3D model

Region: 88 - 217
Aligned: 130
Modelled: 130
Confidence: 95.5%
Identity: 14%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 1k7q chain A

3D model

Region: 87 - 211
Aligned: 124
Modelled: 125
Confidence: 95.0%
Identity: 11%
PDB header:hydrolase
Chain: A: PDB Molecule:secreted protease c;
PDBTitle: prtc from erwinia chrysanthemi: e189a mutant

Phyre2

PDB 1g9k chain A domain 1

3D model

Region: 87 - 215
Aligned: 129
Modelled: 129
Confidence: 94.6%
Identity: 16%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 1sat chain A domain 1

3D model

Region: 83 - 241
Aligned: 157
Modelled: 159
Confidence: 94.3%
Identity: 12%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 2agm chain A

3D model

Region: 163 - 261
Aligned: 99
Modelled: 99
Confidence: 93.6%
Identity: 11%
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4;
PDBTitle: solution structure of the r-module from alge4

Phyre2

PDB 1k7i chain A domain 1

3D model

Region: 107 - 237
Aligned: 131
Modelled: 131
Confidence: 93.0%
Identity: 12%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 1om8 chain A

3D model

Region: 96 - 241
Aligned: 144
Modelled: 146
Confidence: 92.3%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:serralysin;
PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta

Phyre2

PDB 1nay chain C

3D model

Region: 80 - 134
Aligned: 53
Modelled: 55
Confidence: 92.1%
Identity: 8%
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: gpp-foldon:x-ray structure

Phyre2

PDB 1jiw chain P

3D model

Region: 168 - 256
Aligned: 87
Modelled: 89
Confidence: 91.8%
Identity: 20%
PDB header:hydrolase/hyrolase inhibitor
Chain: P: PDB Molecule:alkaline metalloproteinase;
PDBTitle: crystal structure of the apr-aprin complex

Phyre2

PDB 3p4g chain D

3D model

Region: 152 - 243
Aligned: 92
Modelled: 92
Confidence: 62.9%
Identity: 14%
PDB header:antifreeze protein
Chain: D: PDB Molecule:antifreeze protein;
PDBTitle: x-ray crystal structure of a hyperactive, ca2+-dependent, beta-helical2 antifreeze protein from an antarctic bacterium

Phyre2

PDB 1ic8 chain A domain 2

3D model

Region: 17 - 24
Aligned: 8
Modelled: 8
Confidence: 62.9%
Identity: 38%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: POU-specific domain

Phyre2
1

c1ygvA_
2

c1y0fB_
3

c2qubG_
4

c2zj6A_
5

c1satA_
6

c3bogB_
7

c3bogA_
8

c2pneA_
9

c3boiB_
10

c3boiA_
11

d1kapp1
12

c1k7qA_
13

d1g9ka1
14

d1sata1
15

c2agmA_
16

d1k7ia1
17

c1om8A_
18

c1nayC_
19

c1jiwP_
20

c3p4gD_
21

d1ic8a2
22



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1ygvA_



99.2 13 PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment
2c1y0fB_



98.8 13 PDB header:structural protein/contractile protein
Chain: B: PDB Molecule:collagen i alpha 2;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule
3c2qubG_



97.7 13 PDB header:hydrolase
Chain: G: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens
4c2zj6A_



97.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase
5c1satA_



97.0 16 PDB header:hydrolase (serine protease)
Chain: A: PDB Molecule:serratia protease;
PDBTitle: crystal structure of the 50 kda metallo protease from s.2 marcescens
6c3bogB_



96.6 13 PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate
7c3bogA_



96.6 13 PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate
8c2pneA_



96.5 14 PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: crystal structure of the snow flea antifreeze protein
9c3boiB_



96.5 14 PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate
10c3boiA_



96.5 14 PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate
11d1kapp1



95.5 14 Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
12c1k7qA_



95.0 11 PDB header:hydrolase
Chain: A: PDB Molecule:secreted protease c;
PDBTitle: prtc from erwinia chrysanthemi: e189a mutant
13d1g9ka1



94.6 16 Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
14d1sata1



94.3 12 Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
15c2agmA_



93.6 11 PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4;
PDBTitle: solution structure of the r-module from alge4
16d1k7ia1



93.0 12 Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
17c1om8A_



92.3 12 PDB header:hydrolase
Chain: A: PDB Molecule:serralysin;
PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta
18c1nayC_



92.1 8 PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: gpp-foldon:x-ray structure
19c1jiwP_



91.8 20 PDB header:hydrolase/hyrolase inhibitor
Chain: P: PDB Molecule:alkaline metalloproteinase;
PDBTitle: crystal structure of the apr-aprin complex
20c3p4gD_



62.9 14 PDB header:antifreeze protein
Chain: D: PDB Molecule:antifreeze protein;
PDBTitle: x-ray crystal structure of a hyperactive, ca2+-dependent, beta-helical2 antifreeze protein from an antarctic bacterium
21d1ic8a2



62.9 38 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:POU-specific domain
22c1ezyA_



not modelled 41.5 11 PDB header:signaling protein inhibitor
Chain: A: PDB Molecule:regulator of g-protein signaling 4;
PDBTitle: high-resolution solution structure of free rgs4 by nmr
23c2wauA_



not modelled 39.2 30 PDB header:membrane protein
Chain: A: PDB Molecule:erythrocyte membrane protein 1 (pfemp1);
PDBTitle: structure of dbl6 epsilon domain from var2csa
24d1zroa2



not modelled 37.6 30 Fold:Duffy binding domain-like
Superfamily:Duffy binding domain-like
Family:Duffy binding domain
25d1h8ba_



not modelled 36.3 16 Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
26d1a9xa1



not modelled 34.7 20 Fold:Carbamoyl phosphate synthetase, large subunit connection domain
Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain
Family:Carbamoyl phosphate synthetase, large subunit connection domain
27c2c6jA_



not modelled 30.8 30 PDB header:receptor
Chain: A: PDB Molecule:duffy receptor, alpha form;
PDBTitle: structure of p. knowlesi dbl domain capable of binding2 human duffy antigen
28d2c6ja1



not modelled 30.8 30 Fold:Duffy binding domain-like
Superfamily:Duffy binding domain-like
Family:Duffy binding domain
29c2xu0A_



not modelled 30.5 30 PDB header:membrane protein
Chain: A: PDB Molecule:erythrocyte membrane protein 1;
PDBTitle: crystal structure of the nts-dbl1(alpha-1) domain of the plasmodium2 falciparum membrane protein 1 (pfemp1) from the varo strain.
30c3cpzA_



not modelled 29.8 20 PDB header:membrane protein
Chain: A: PDB Molecule:erythrocyte membrane protein 1;
PDBTitle: crystal structure of var2csa dbl3x domain in the presence of2 dodecasaccharide of csa
31d1zroa1



not modelled 26.9 10 Fold:Duffy binding domain-like
Superfamily:Duffy binding domain-like
Family:Duffy binding domain
32c1e17A_



not modelled 23.9 36 PDB header:dna binding domain
Chain: A: PDB Molecule:afx;
PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4)
33c1kzzA_



not modelled 19.9 24 PDB header:signaling protein
Chain: A: PDB Molecule:tnf receptor associated factor 3;
PDBTitle: downstream regulator tank binds to the cd40 recognition2 site on traf3
34c2rngA_



not modelled 19.8 7 PDB header:antimicrobial protein
Chain: A: PDB Molecule:big defensin;
PDBTitle: solution structure of big defensin
35d3bpya1



not modelled 19.8 42 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
36d1kq8a_



not modelled 19.6 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
37c1kq8A_



not modelled 19.6 25 PDB header:transcription
Chain: A: PDB Molecule:hepatocyte nuclear factor 3 forkhead homolog 1;
PDBTitle: solution structure of winged helix protein hfh-1
38c3g73A_



not modelled 19.1 42 PDB header:transcription/dna
Chain: A: PDB Molecule:forkhead box protein m1;
PDBTitle: structure of the foxm1 dna binding
39d1czya1



not modelled 18.4 25 Fold:TRAF domain-like
Superfamily:TRAF domain-like
Family:MATH domain
40c3chxG_



not modelled 17.4 24 PDB header:membrane protein
Chain: G: PDB Molecule:pmoc;
PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo)
41d1l0aa1



not modelled 17.1 25 Fold:TRAF domain-like
Superfamily:TRAF domain-like
Family:MATH domain
42c1ca9D_



not modelled 16.5 25 PDB header:tnf signaling
Chain: D: PDB Molecule:protein (tnf receptor associated factor 2);
PDBTitle: structure of tnf receptor associated factor 2 in complex2 with a peptide from tnf-r2
43d1d5va_



not modelled 16.4 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
44d1lb6a_



not modelled 15.8 19 Fold:TRAF domain-like
Superfamily:TRAF domain-like
Family:MATH domain
45d2prva1



not modelled 15.8 36 Fold:SMI1/KNR4-like
Superfamily:SMI1/KNR4-like
Family:SMI1/KNR4-like
46c1zroB_



not modelled 15.7 10 PDB header:cell invasion
Chain: B: PDB Molecule:erythrocyte binding antigen region ii;
PDBTitle: crystal structure of eba-175 region ii (rii) crystallized2 in the presence of (alpha)2,3-sialyllactose
47d2icga1



not modelled 14.9 27 Fold:SMI1/KNR4-like
Superfamily:SMI1/KNR4-like
Family:SMI1/KNR4-like
48d1n1xa_



not modelled 14.8 29 Fold:RNase A-like
Superfamily:RNase A-like
Family:Ribonuclease A-like
49c3i7fA_



not modelled 14.6 20 PDB header:ligase
Chain: A: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: aspartyl trna synthetase from entamoeba histolytica
50c1fllA_



not modelled 14.6 25 PDB header:apoptosis
Chain: A: PDB Molecule:tnf receptor associated factor 3;
PDBTitle: molecular basis for cd40 signaling mediated by traf3
51c2jrrA_



not modelled 14.2 36 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of q5lls5 from silicibacter2 pomeroyi. northeast structural genomics consortium target3 sir90
52c3nuhB_



not modelled 13.9 31 PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit b;
PDBTitle: a domain insertion in e. coli gyrb adopts a novel fold that plays a2 critical role in gyrase function
53c3co7C_



not modelled 13.6 25 PDB header:transcription/dna
Chain: C: PDB Molecule:forkhead box protein o1;
PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna
54d1b6va_



not modelled 13.0 29 Fold:RNase A-like
Superfamily:RNase A-like
Family:Ribonuclease A-like
55c2hkyA_



not modelled 12.9 29 PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease 7;
PDBTitle: nmr solution structure of human rnase 7
56d2c6ya1



not modelled 12.9 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
57d2a07f1



not modelled 12.7 45 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
58d1srna_



not modelled 12.7 29 Fold:RNase A-like
Superfamily:RNase A-like
Family:Ribonuclease A-like
59d1lq9a_



not modelled 12.4 17 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Actinorhodin biosynthesis monooxygenase ActVa-Orf6
60d1gqva_



not modelled 11.2 29 Fold:RNase A-like
Superfamily:RNase A-like
Family:Ribonuclease A-like
61c1ceuA_



not modelled 11.1 35 PDB header:viral protein
Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal
PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein
62c2kz6A_



not modelled 11.0 33 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of protein cv0426 from chromobacterium violaceum,2 northeast structural genomics consortium (nesg) target cvt2
63d1h8xa_



not modelled 10.8 29 Fold:RNase A-like
Superfamily:RNase A-like
Family:Ribonuclease A-like
64d2hfha_



not modelled 10.6 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
65c3fofD_



not modelled 10.5 27 PDB header:isomerase/dna
Chain: D: PDB Molecule:dna topoisomerase 4 subunit b;
PDBTitle: structural insight into the quinolone-dna cleavage complex2 of type iia topoisomerases
66d1e7ua4



not modelled 10.4 16 Fold:Protein kinase-like (PK-like)
Superfamily:Protein kinase-like (PK-like)
Family:Phoshoinositide 3-kinase (PI3K), catalytic domain
67d1id3c_



not modelled 10.3 21 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
68d1agre_



not modelled 10.1 11 Fold:Regulator of G-protein signaling, RGS
Superfamily:Regulator of G-protein signaling, RGS
Family:Regulator of G-protein signaling, RGS
69c1agrE_



not modelled 10.1 11 PDB header:complex (signal transduction/regulator)
Chain: E: PDB Molecule:rgs4;
PDBTitle: complex of alf4-activated gi-alpha-1 with rgs4
70d1rraa_



not modelled 10.0 29 Fold:RNase A-like
Superfamily:RNase A-like
Family:Ribonuclease A-like
71c2z9fC_



not modelled 9.9 12 PDB header:biosynthetic protein
Chain: C: PDB Molecule:cellulose synthase operon protein d;
PDBTitle: crystal structure of axcesd protein from acetobacter xylinum
72c1iojA_



not modelled 9.9 26 PDB header:apolipoprotein
Chain: A: PDB Molecule:apoc-i;
PDBTitle: human apolipoprotein c-i, nmr, 18 structures
73d1f7ca_



not modelled 9.9 13 Fold:GTPase activation domain, GAP
Superfamily:GTPase activation domain, GAP
Family:BCR-homology GTPase activation domain (BH-domain)
74c1f7cA_



not modelled 9.9 13 PDB header:signaling protein
Chain: A: PDB Molecule:rhogap protein;
PDBTitle: crystal structure of the bh domain from graf, the gtpase2 regulator associated with focal adhesion kinase
75d1tzya_



not modelled 9.7 18 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
76c3hwpA_



not modelled 9.4 20 PDB header:hydrolase
Chain: A: PDB Molecule:phlg;
PDBTitle: crystal structure and computational analyses provide insights into the2 catalytic mechanism of 2, 4-diacetylphloroglucinol hydrolase phlg3 from pseudomonas fluorescens
77c3fbyC_



not modelled 9.4 53 PDB header:cell adhesion
Chain: C: PDB Molecule:cartilage oligomeric matrix protein;
PDBTitle: the crystal structure of the signature domain of cartilage oligomeric2 matrix protein.
78c2zjtB_



not modelled 9.3 15 PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit b;
PDBTitle: crystal structure of dna gyrase b' domain sheds lights on2 the mechanism for t-segment navigation
79c3ifuA_



not modelled 9.2 21 PDB header:transcription
Chain: A: PDB Molecule:non-structural protein;
PDBTitle: the crystal structure of porcine reproductive and2 respiratory syndrome virus (prrsv) leader protease nsp1
80d1j77a_



not modelled 9.1 16 Fold:Heme oxygenase-like
Superfamily:Heme oxygenase-like
Family:Heme oxygenase HemO (PigA)
81c3qwlA_



not modelled 9.0 32 PDB header:hydrolase activator
Chain: A: PDB Molecule:tbc1 domain family member 7;
PDBTitle: crystal structure of human tbc1 domain family member 7
82d1u35c1



not modelled 9.0 18 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
83c2kn6A_



not modelled 8.8 23 PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis-associated speck-like protein containing a card;
PDBTitle: structure of full-length human asc (apoptosis-associated speck-like2 protein containing a card)
84c2oq2B_



not modelled 8.7 30 PDB header:oxidoreductase
Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase;
PDBTitle: crystal structure of yeast paps reductase with pap, a product complex
85d1dy5a_



not modelled 8.4 29 Fold:RNase A-like
Superfamily:RNase A-like
Family:Ribonuclease A-like
86c3fqdA_



not modelled 8.4 23 PDB header:hydrolase/protein binding
Chain: A: PDB Molecule:5'-3' exoribonuclease 2;
PDBTitle: crystal structure of the s. pombe rat1-rai1 complex
87c3bwvB_



not modelled 8.3 27 PDB header:hydrolase
Chain: B: PDB Molecule:putative 5'(3')-deoxyribonucleotidase;
PDBTitle: crystal structure of deoxyribonucleotidase-like protein (np_764060.1)2 from staphylococcus epidermidis atcc 12228 at 1.55 a resolution
88c3id6A_



not modelled 8.2 67 PDB header:transferase
Chain: A: PDB Molecule:pre mrna splicing protein;
PDBTitle: crystal structure of sulfolobus solfataricus nop5 (1-262) and2 fibrillarin complex
89c2zpoA_



not modelled 8.1 57 PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease;
PDBTitle: crystal structure of green turtle egg white ribonuclease
90d1pbwa_



not modelled 7.9 17 Fold:GTPase activation domain, GAP
Superfamily:GTPase activation domain, GAP
Family:BCR-homology GTPase activation domain (BH-domain)
91d1kx3c_



not modelled 7.8 21 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
92d1juqa_



not modelled 7.7 23 Fold:alpha-alpha superhelix
Superfamily:ENTH/VHS domain
Family:VHS domain
93d1fx0b2



not modelled 7.5 40 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
94d1ucpa_



not modelled 7.4 23 Fold:DEATH domain
Superfamily:DEATH domain
Family:Pyrin domain, PYD
95d1ztda1



not modelled 7.4 46 Fold:RNase III domain-like
Superfamily:RNase III domain-like
Family:PF0609-like
96d1dyta_



not modelled 7.4 29 Fold:RNase A-like
Superfamily:RNase A-like
Family:Ribonuclease A-like
97c1yo8A_



not modelled 7.3 47 PDB header:cell adhesion
Chain: A: PDB Molecule:thrombospondin-2;
PDBTitle: structure of the c-terminal domain of human thrombospondin-2
98c1f66C_



not modelled 7.3 30 PDB header:structural protein/dna
Chain: C: PDB Molecule:histone h2a.z;
PDBTitle: 2.6 a crystal structure of a nucleosome core particle2 containing the variant histone h2a.z
99d1f66c_



not modelled 7.3 30 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0