Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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60

Sequence

M

I

I

T

Q

A

D

L

R

E

W

R

I

G

A

V

M

Y

R

W

F

L

R

H

F

P

R

G

G

S

Y

A

D

I

H

H

A

L

I

E

E

G

Y

T

D

W

A

E

S

L

V

E

Y

A

W

K

K

W

L

A

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

Disorder confidence

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70

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80

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90

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100

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110

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120

Sequence

D

E

N

F

A

H

Q

E

V

S

S

M

Q

K

L

A

T

D

P

G

E

R

P

F

C

S

Q

F

A

R

S

D

D

H

A

R

I

G

C

C

E

D

N

A

R

I

A

T

A

G

Y

A

A

Q

I

A

S

M

G

Y

Secondary structure

SS confidence

Disorder

?

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?

?

?

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?

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?

?

?

Disorder confidence

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130

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140

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150

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160

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170

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180

Sequence

S

V

R

I

G

S

V

G

F

N

S

H

I

G

S

S

G

E

R

A

R

V

A

V

T

G

N

S

S

R

I

S

S

A

G

D

S

S

R

I

A

N

T

G

M

R

V

R

V

C

T

L

G

E

R

C

H

V

A

S

Secondary structure

SS confidence

Disorder

?

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?

Disorder confidence

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190

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200

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210

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220

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230

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240

Sequence

N

G

D

L

V

Q

I

A

S

F

G

A

N

A

R

I

A

N

S

G

D

N

V

H

I

I

A

S

G

E

N

S

T

V

V

S

T

G

V

V

D

S

I

I

L

G

P

G

G

S

A

A

L

A

Y

H

D

G

E

R

Secondary structure

SS confidence

Disorder

?

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?

Disorder confidence

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250

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260

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270

Sequence

V

R

F

A

V

A

I

E

G

E

N

N

I

R

A

G

V

R

Y

R

L

N

E

Q

H

Q

F

V

E

C

Secondary structure

SS confidence

Disorder

?

?

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?

?

?

?

?

?

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?

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?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ygv chain A Region: 61 - 268 Aligned: 204 Modelled: 208 Confidence: 99.2% Identity: 13% PDB header:structural protein/contractile protein Chain: A: PDB Molecule:collagen i alpha 1; PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment Phyre2 PDB 1y0f chain B Region: 64 - 239 Aligned: 172 Modelled: 173 Confidence: 98.8% Identity: 13% PDB header:structural protein/contractile protein Chain: B: PDB Molecule:collagen i alpha 2; PDBTitle: the structure of collagen type i. single type i collagen2 molecule Phyre2 PDB 2qub chain G Region: 77 - 256 Aligned: 179 Modelled: 180 Confidence: 97.7% Identity: 13% PDB header:hydrolase Chain: G: PDB Molecule:extracellular lipase; PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens Phyre2 PDB 2zj6 chain A Region: 77 - 253 Aligned: 175 Modelled: 177 Confidence: 97.7% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:lipase; PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase Phyre2 PDB 1sat chain A Region: 80 - 220 Aligned: 141 Modelled: 141 Confidence: 97.0% Identity: 16% PDB header:hydrolase (serine protease) Chain: A: PDB Molecule:serratia protease; PDBTitle: crystal structure of the 50 kda metallo protease from s.2 marcescens Phyre2 PDB 3bog chain B Region: 77 - 154 Aligned: 77 Modelled: 78 Confidence: 96.6% Identity: 13% PDB header:antifreeze protein Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein quasi-racemate Phyre2 PDB 3bog chain A Region: 77 - 154 Aligned: 77 Modelled: 78 Confidence: 96.6% Identity: 13% PDB header:antifreeze protein Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein quasi-racemate Phyre2 PDB 2pne chain A Region: 99 - 181 Aligned: 81 Modelled: 83 Confidence: 96.5% Identity: 14% PDB header:antifreeze protein Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: crystal structure of the snow flea antifreeze protein Phyre2 PDB 3boi chain B Region: 99 - 181 Aligned: 81 Modelled: 83 Confidence: 96.5% Identity: 14% PDB header:antifreeze protein Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein racemate Phyre2 PDB 3boi chain A Region: 99 - 181 Aligned: 81 Modelled: 83 Confidence: 96.5% Identity: 14% PDB header:antifreeze protein Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein racemate Phyre2 PDB 1kap chain P domain 1 Region: 88 - 217 Aligned: 130 Modelled: 130 Confidence: 95.5% Identity: 14% Fold: Single-stranded right-handed beta-helix Superfamily: beta-Roll Family: Serralysin-like metalloprotease, C-terminal domain Phyre2 PDB 1k7q chain A Region: 87 - 211 Aligned: 124 Modelled: 125 Confidence: 95.0% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:secreted protease c; PDBTitle: prtc from erwinia chrysanthemi: e189a mutant Phyre2 PDB 1g9k chain A domain 1 Region: 87 - 215 Aligned: 129 Modelled: 129 Confidence: 94.6% Identity: 16% Fold: Single-stranded right-handed beta-helix Superfamily: beta-Roll Family: Serralysin-like metalloprotease, C-terminal domain Phyre2 PDB 1sat chain A domain 1 Region: 83 - 241 Aligned: 157 Modelled: 159 Confidence: 94.3% Identity: 12% Fold: Single-stranded right-handed beta-helix Superfamily: beta-Roll Family: Serralysin-like metalloprotease, C-terminal domain Phyre2 PDB 2agm chain A Region: 163 - 261 Aligned: 99 Modelled: 99 Confidence: 93.6% Identity: 11% PDB header:isomerase Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4; PDBTitle: solution structure of the r-module from alge4 Phyre2 PDB 1k7i chain A domain 1 Region: 107 - 237 Aligned: 131 Modelled: 131 Confidence: 93.0% Identity: 12% Fold: Single-stranded right-handed beta-helix Superfamily: beta-Roll Family: Serralysin-like metalloprotease, C-terminal domain Phyre2 PDB 1om8 chain A Region: 96 - 241 Aligned: 144 Modelled: 146 Confidence: 92.3% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:serralysin; PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta Phyre2 PDB 1nay chain C Region: 80 - 134 Aligned: 53 Modelled: 55 Confidence: 92.1% Identity: 8% PDB header:structural protein Chain: C: PDB Molecule:collagen-like peptide; PDBTitle: gpp-foldon:x-ray structure Phyre2 PDB 1jiw chain P Region: 168 - 256 Aligned: 87 Modelled: 89 Confidence: 91.8% Identity: 20% PDB header:hydrolase/hyrolase inhibitor Chain: P: PDB Molecule:alkaline metalloproteinase; PDBTitle: crystal structure of the apr-aprin complex Phyre2 PDB 3p4g chain D Region: 152 - 243 Aligned: 92 Modelled: 92 Confidence: 62.9% Identity: 14% PDB header:antifreeze protein Chain: D: PDB Molecule:antifreeze protein; PDBTitle: x-ray crystal structure of a hyperactive, ca2+-dependent, beta-helical2 antifreeze protein from an antarctic bacterium Phyre2 PDB 1ic8 chain A domain 2 Region: 17 - 24 Aligned: 8 Modelled: 8 Confidence: 62.9% Identity: 38% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: POU-specific domain Phyre2 1 c1ygvA_ 2 c1y0fB_ 3 c2qubG_ 4 c2zj6A_ 5 c1satA_ 6 c3bogB_ 7 c3bogA_ 8 c2pneA_ 9 c3boiB_ 10 c3boiA_ 11 d1kapp1 12 c1k7qA_ 13 d1g9ka1 14 d1sata1 15 c2agmA_ 16 d1k7ia1 17 c1om8A_ 18 c1nayC_ 19 c1jiwP_ 20 c3p4gD_ 21 d1ic8a2 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1ygvA_ 99.2 13 PDB header:structural protein/contractile protein Chain: A: PDB Molecule:collagen i alpha 1; PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment 2 c1y0fB_ 98.8 13 PDB header:structural protein/contractile protein Chain: B: PDB Molecule:collagen i alpha 2; PDBTitle: the structure of collagen type i. single type i collagen2 molecule 3 c2qubG_ 97.7 13 PDB header:hydrolase Chain: G: PDB Molecule:extracellular lipase; PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens 4 c2zj6A_ 97.7 13 PDB header:hydrolase Chain: A: PDB Molecule:lipase; PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase 5 c1satA_ 97.0 16 PDB header:hydrolase (serine protease) Chain: A: PDB Molecule:serratia protease; PDBTitle: crystal structure of the 50 kda metallo protease from s.2 marcescens 6 c3bogB_ 96.6 13 PDB header:antifreeze protein Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein quasi-racemate 7 c3bogA_ 96.6 13 PDB header:antifreeze protein Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein quasi-racemate 8 c2pneA_ 96.5 14 PDB header:antifreeze protein Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: crystal structure of the snow flea antifreeze protein 9 c3boiB_ 96.5 14 PDB header:antifreeze protein Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein racemate 10 c3boiA_ 96.5 14 PDB header:antifreeze protein Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein racemate 11 d1kapp1 95.5 14 Fold:Single-stranded right-handed beta-helix Superfamily:beta-Roll Family:Serralysin-like metalloprotease, C-terminal domain 12 c1k7qA_ 95.0 11 PDB header:hydrolase Chain: A: PDB Molecule:secreted protease c; PDBTitle: prtc from erwinia chrysanthemi: e189a mutant 13 d1g9ka1 94.6 16 Fold:Single-stranded right-handed beta-helix Superfamily:beta-Roll Family:Serralysin-like metalloprotease, C-terminal domain 14 d1sata1 94.3 12 Fold:Single-stranded right-handed beta-helix Superfamily:beta-Roll Family:Serralysin-like metalloprotease, C-terminal domain 15 c2agmA_ 93.6 11 PDB header:isomerase Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4; PDBTitle: solution structure of the r-module from alge4 16 d1k7ia1 93.0 12 Fold:Single-stranded right-handed beta-helix Superfamily:beta-Roll Family:Serralysin-like metalloprotease, C-terminal domain 17 c1om8A_ 92.3 12 PDB header:hydrolase Chain: A: PDB Molecule:serralysin; PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta 18 c1nayC_ 92.1 8 PDB header:structural protein Chain: C: PDB Molecule:collagen-like peptide; PDBTitle: gpp-foldon:x-ray structure 19 c1jiwP_ 91.8 20 PDB header:hydrolase/hyrolase inhibitor Chain: P: PDB Molecule:alkaline metalloproteinase; PDBTitle: crystal structure of the apr-aprin complex 20 c3p4gD_ 62.9 14 PDB header:antifreeze protein Chain: D: PDB Molecule:antifreeze protein; PDBTitle: x-ray crystal structure of a hyperactive, ca2+-dependent, beta-helical2 antifreeze protein from an antarctic bacterium 21 d1ic8a2 62.9 38 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:POU-specific domain 22 c1ezyA_ not modelled 41.5 11 PDB header:signaling protein inhibitor Chain: A: PDB Molecule:regulator of g-protein signaling 4; PDBTitle: high-resolution solution structure of free rgs4 by nmr 23 c2wauA_ not modelled 39.2 30 PDB header:membrane protein Chain: A: PDB Molecule:erythrocyte membrane protein 1 (pfemp1); PDBTitle: structure of dbl6 epsilon domain from var2csa 24 d1zroa2 not modelled 37.6 30 Fold:Duffy binding domain-like Superfamily:Duffy binding domain-like Family:Duffy binding domain 25 d1h8ba_ not modelled 36.3 16 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 26 d1a9xa1 not modelled 34.7 20 Fold:Carbamoyl phosphate synthetase, large subunit connection domain Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain Family:Carbamoyl phosphate synthetase, large subunit connection domain 27 c2c6jA_ not modelled 30.8 30 PDB header:receptor Chain: A: PDB Molecule:duffy receptor, alpha form; PDBTitle: structure of p. knowlesi dbl domain capable of binding2 human duffy antigen 28 d2c6ja1 not modelled 30.8 30 Fold:Duffy binding domain-like Superfamily:Duffy binding domain-like Family:Duffy binding domain 29 c2xu0A_ not modelled 30.5 30 PDB header:membrane protein Chain: A: PDB Molecule:erythrocyte membrane protein 1; PDBTitle: crystal structure of the nts-dbl1(alpha-1) domain of the plasmodium2 falciparum membrane protein 1 (pfemp1) from the varo strain. 30 c3cpzA_ not modelled 29.8 20 PDB header:membrane protein Chain: A: PDB Molecule:erythrocyte membrane protein 1; PDBTitle: crystal structure of var2csa dbl3x domain in the presence of2 dodecasaccharide of csa 31 d1zroa1 not modelled 26.9 10 Fold:Duffy binding domain-like Superfamily:Duffy binding domain-like Family:Duffy binding domain 32 c1e17A_ not modelled 23.9 36 PDB header:dna binding domain Chain: A: PDB Molecule:afx; PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4) 33 c1kzzA_ not modelled 19.9 24 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: downstream regulator tank binds to the cd40 recognition2 site on traf3 34 c2rngA_ not modelled 19.8 7 PDB header:antimicrobial protein Chain: A: PDB Molecule:big defensin; PDBTitle: solution structure of big defensin 35 d3bpya1 not modelled 19.8 42 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 36 d1kq8a_ not modelled 19.6 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 37 c1kq8A_ not modelled 19.6 25 PDB header:transcription Chain: A: PDB Molecule:hepatocyte nuclear factor 3 forkhead homolog 1; PDBTitle: solution structure of winged helix protein hfh-1 38 c3g73A_ not modelled 19.1 42 PDB header:transcription/dna Chain: A: PDB Molecule:forkhead box protein m1; PDBTitle: structure of the foxm1 dna binding 39 d1czya1 not modelled 18.4 25 Fold:TRAF domain-like Superfamily:TRAF domain-like Family:MATH domain 40 c3chxG_ not modelled 17.4 24 PDB header:membrane protein Chain: G: PDB Molecule:pmoc; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo) 41 d1l0aa1 not modelled 17.1 25 Fold:TRAF domain-like Superfamily:TRAF domain-like Family:MATH domain 42 c1ca9D_ not modelled 16.5 25 PDB header:tnf signaling Chain: D: PDB Molecule:protein (tnf receptor associated factor 2); PDBTitle: structure of tnf receptor associated factor 2 in complex2 with a peptide from tnf-r2 43 d1d5va_ not modelled 16.4 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 44 d1lb6a_ not modelled 15.8 19 Fold:TRAF domain-like Superfamily:TRAF domain-like Family:MATH domain 45 d2prva1 not modelled 15.8 36 Fold:SMI1/KNR4-like Superfamily:SMI1/KNR4-like Family:SMI1/KNR4-like 46 c1zroB_ not modelled 15.7 10 PDB header:cell invasion Chain: B: PDB Molecule:erythrocyte binding antigen region ii; PDBTitle: crystal structure of eba-175 region ii (rii) crystallized2 in the presence of (alpha)2,3-sialyllactose 47 d2icga1 not modelled 14.9 27 Fold:SMI1/KNR4-like Superfamily:SMI1/KNR4-like Family:SMI1/KNR4-like 48 d1n1xa_ not modelled 14.8 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 49 c3i7fA_ not modelled 14.6 20 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 50 c1fllA_ not modelled 14.6 25 PDB header:apoptosis Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: molecular basis for cd40 signaling mediated by traf3 51 c2jrrA_ not modelled 14.2 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of q5lls5 from silicibacter2 pomeroyi. northeast structural genomics consortium target3 sir90 52 c3nuhB_ not modelled 13.9 31 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit b; PDBTitle: a domain insertion in e. coli gyrb adopts a novel fold that plays a2 critical role in gyrase function 53 c3co7C_ not modelled 13.6 25 PDB header:transcription/dna Chain: C: PDB Molecule:forkhead box protein o1; PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna 54 d1b6va_ not modelled 13.0 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 55 c2hkyA_ not modelled 12.9 29 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease 7; PDBTitle: nmr solution structure of human rnase 7 56 d2c6ya1 not modelled 12.9 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 57 d2a07f1 not modelled 12.7 45 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 58 d1srna_ not modelled 12.7 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 59 d1lq9a_ not modelled 12.4 17 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Actinorhodin biosynthesis monooxygenase ActVa-Orf6 60 d1gqva_ not modelled 11.2 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 61 c1ceuA_ not modelled 11.1 35 PDB header:viral protein Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein 62 c2kz6A_ not modelled 11.0 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein cv0426 from chromobacterium violaceum,2 northeast structural genomics consortium (nesg) target cvt2 63 d1h8xa_ not modelled 10.8 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 64 d2hfha_ not modelled 10.6 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 65 c3fofD_ not modelled 10.5 27 PDB header:isomerase/dna Chain: D: PDB Molecule:dna topoisomerase 4 subunit b; PDBTitle: structural insight into the quinolone-dna cleavage complex2 of type iia topoisomerases 66 d1e7ua4 not modelled 10.4 16 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:Phoshoinositide 3-kinase (PI3K), catalytic domain 67 d1id3c_ not modelled 10.3 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 68 d1agre_ not modelled 10.1 11 Fold:Regulator of G-protein signaling, RGS Superfamily:Regulator of G-protein signaling, RGS Family:Regulator of G-protein signaling, RGS 69 c1agrE_ not modelled 10.1 11 PDB header:complex (signal transduction/regulator) Chain: E: PDB Molecule:rgs4; PDBTitle: complex of alf4-activated gi-alpha-1 with rgs4 70 d1rraa_ not modelled 10.0 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 71 c2z9fC_ not modelled 9.9 12 PDB header:biosynthetic protein Chain: C: PDB Molecule:cellulose synthase operon protein d; PDBTitle: crystal structure of axcesd protein from acetobacter xylinum 72 c1iojA_ not modelled 9.9 26 PDB header:apolipoprotein Chain: A: PDB Molecule:apoc-i; PDBTitle: human apolipoprotein c-i, nmr, 18 structures 73 d1f7ca_ not modelled 9.9 13 Fold:GTPase activation domain, GAP Superfamily:GTPase activation domain, GAP Family:BCR-homology GTPase activation domain (BH-domain) 74 c1f7cA_ not modelled 9.9 13 PDB header:signaling protein Chain: A: PDB Molecule:rhogap protein; PDBTitle: crystal structure of the bh domain from graf, the gtpase2 regulator associated with focal adhesion kinase 75 d1tzya_ not modelled 9.7 18 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 76 c3hwpA_ not modelled 9.4 20 PDB header:hydrolase Chain: A: PDB Molecule:phlg; PDBTitle: crystal structure and computational analyses provide insights into the2 catalytic mechanism of 2, 4-diacetylphloroglucinol hydrolase phlg3 from pseudomonas fluorescens 77 c3fbyC_ not modelled 9.4 53 PDB header:cell adhesion Chain: C: PDB Molecule:cartilage oligomeric matrix protein; PDBTitle: the crystal structure of the signature domain of cartilage oligomeric2 matrix protein. 78 c2zjtB_ not modelled 9.3 15 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit b; PDBTitle: crystal structure of dna gyrase b' domain sheds lights on2 the mechanism for t-segment navigation 79 c3ifuA_ not modelled 9.2 21 PDB header:transcription Chain: A: PDB Molecule:non-structural protein; PDBTitle: the crystal structure of porcine reproductive and2 respiratory syndrome virus (prrsv) leader protease nsp1 80 d1j77a_ not modelled 9.1 16 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:Heme oxygenase HemO (PigA) 81 c3qwlA_ not modelled 9.0 32 PDB header:hydrolase activator Chain: A: PDB Molecule:tbc1 domain family member 7; PDBTitle: crystal structure of human tbc1 domain family member 7 82 d1u35c1 not modelled 9.0 18 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 83 c2kn6A_ not modelled 8.8 23 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis-associated speck-like protein containing a card; PDBTitle: structure of full-length human asc (apoptosis-associated speck-like2 protein containing a card) 84 c2oq2B_ not modelled 8.7 30 PDB header:oxidoreductase Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: crystal structure of yeast paps reductase with pap, a product complex 85 d1dy5a_ not modelled 8.4 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 86 c3fqdA_ not modelled 8.4 23 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:5'-3' exoribonuclease 2; PDBTitle: crystal structure of the s. pombe rat1-rai1 complex 87 c3bwvB_ not modelled 8.3 27 PDB header:hydrolase Chain: B: PDB Molecule:putative 5'(3')-deoxyribonucleotidase; PDBTitle: crystal structure of deoxyribonucleotidase-like protein (np_764060.1)2 from staphylococcus epidermidis atcc 12228 at 1.55 a resolution 88 c3id6A_ not modelled 8.2 67 PDB header:transferase Chain: A: PDB Molecule:pre mrna splicing protein; PDBTitle: crystal structure of sulfolobus solfataricus nop5 (1-262) and2 fibrillarin complex 89 c2zpoA_ not modelled 8.1 57 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: crystal structure of green turtle egg white ribonuclease 90 d1pbwa_ not modelled 7.9 17 Fold:GTPase activation domain, GAP Superfamily:GTPase activation domain, GAP Family:BCR-homology GTPase activation domain (BH-domain) 91 d1kx3c_ not modelled 7.8 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 92 d1juqa_ not modelled 7.7 23 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 93 d1fx0b2 not modelled 7.5 40 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 94 d1ucpa_ not modelled 7.4 23 Fold:DEATH domain Superfamily:DEATH domain Family:Pyrin domain, PYD 95 d1ztda1 not modelled 7.4 46 Fold:RNase III domain-like Superfamily:RNase III domain-like Family:PF0609-like 96 d1dyta_ not modelled 7.4 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 97 c1yo8A_ not modelled 7.3 47 PDB header:cell adhesion Chain: A: PDB Molecule:thrombospondin-2; PDBTitle: structure of the c-terminal domain of human thrombospondin-2 98 c1f66C_ not modelled 7.3 30 PDB header:structural protein/dna Chain: C: PDB Molecule:histone h2a.z; PDBTitle: 2.6 a crystal structure of a nucleosome core particle2 containing the variant histone h2a.z 99 d1f66c_ not modelled 7.3 30 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0