Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	E	I	L	Y	Q	D	E	W	L	V	A	V	N	K	P	S	G	W	L	V	H	R	S	W	L	D	R	D	E	K	V	V	V	M	Q	T	V	R	D	Q	I	G	Q	H	V	F	T	A	H	R	L	D	R	P	T	S	G	V
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	L	M	G	L	S	S	E	A	G	R	L	L	A	Q	Q	F	E	Q	H	Q	I	Q	K	R	Y	H	A	I	V	R	G	W	L	M	E	E	A	V	L	D	Y	P	L	V	E	E	L	D	K	I	A	D	K	F	A	R	E	D	K
Secondary structure
SS confidence
Disorder																				?		?																										?											?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	P	Q	P	A	V	T	H	Y	R	G	L	A	T	V	E	M	P	V	A	T	G	R	Y	P	T	T	R	Y	G	L	V	E	L	E	P	K	T	G	R	K	H	Q	L	R	R	H	L	A	H	L	R	H	P	I	I	G	D	S	K
Secondary structure
SS confidence
Disorder		?																		?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		H	G	D	L	R	Q	N	R	S	G	A	E	H	F	G	L	Q	R	L	M	L	H	A	S	Q	L	S	L	T	H	P	F	T	G	E	P	L	T	I	H	A	G	L	D	D	T	W	M	Q	A	L	S	Q	F	G	W	R	G	L	L
Secondary structure
SS confidence
Disorder							?	?	?	?	?	?	?		?																																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Sequence		P	E	N	E	R	V	E	F	S	A	P	S	G	Q	D	G	E	I	S	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1v9f chain A Region: 2 - 237 Aligned: 223 Modelled: 236 Confidence: 100.0% Identity: 28% PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli Phyre2 PDB 1v9f chain A Region: 2 - 237 Aligned: 223 Modelled: 236 Confidence: 100.0% Identity: 28% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase RsuA/RluD Phyre2 PDB 1qyu chain A Region: 2 - 237 Aligned: 223 Modelled: 236 Confidence: 100.0% Identity: 27% PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud Phyre2 PDB 1v9k chain A Region: 4 - 234 Aligned: 219 Modelled: 228 Confidence: 100.0% Identity: 34% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase RsuA/RluD Phyre2 PDB 2i82 chain D Region: 2 - 224 Aligned: 205 Modelled: 217 Confidence: 100.0% Identity: 36% PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure Phyre2 PDB 1vio chain A Region: 2 - 183 Aligned: 151 Modelled: 170 Confidence: 100.0% Identity: 21% PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase Phyre2 PDB 1ksk chain A Region: 4 - 183 Aligned: 151 Modelled: 168 Confidence: 100.0% Identity: 19% PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua Phyre2 PDB 2oml chain A Region: 7 - 188 Aligned: 164 Modelled: 180 Confidence: 100.0% Identity: 19% PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue Phyre2 PDB 2olw chain B Region: 11 - 183 Aligned: 155 Modelled: 173 Confidence: 100.0% Identity: 19% PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue Phyre2 PDB 3dh3 chain C Region: 3 - 183 Aligned: 148 Modelled: 155 Confidence: 100.0% Identity: 20% PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate Phyre2 PDB 1ksk chain A domain 4 Region: 10 - 181 Aligned: 143 Modelled: 172 Confidence: 100.0% Identity: 18% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase RsuA/RluD Phyre2 PDB 1vio chain A domain 1 Region: 7 - 183 Aligned: 146 Modelled: 165 Confidence: 100.0% Identity: 21% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase RsuA/RluD Phyre2 PDB 2gml chain A Region: 8 - 181 Aligned: 141 Modelled: 148 Confidence: 100.0% Identity: 21% PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf Phyre2 PDB 1k8w chain A domain 5 Region: 9 - 90 Aligned: 69 Modelled: 82 Confidence: 97.7% Identity: 20% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 1sgv chain A domain 2 Region: 8 - 90 Aligned: 70 Modelled: 83 Confidence: 97.6% Identity: 27% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 2apo chain A domain 2 Region: 9 - 90 Aligned: 69 Modelled: 82 Confidence: 97.5% Identity: 22% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 2ey4 chain A domain 2 Region: 8 - 91 Aligned: 71 Modelled: 84 Confidence: 97.5% Identity: 23% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 2ey4 chain A Region: 9 - 91 Aligned: 70 Modelled: 83 Confidence: 97.4% Identity: 23% PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex Phyre2 PDB 1r3e chain A domain 2 Region: 9 - 90 Aligned: 69 Modelled: 82 Confidence: 97.4% Identity: 20% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 3uai chain A Region: 8 - 90 Aligned: 70 Modelled: 82 Confidence: 97.1% Identity: 26% PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae Phyre2 1 c1v9fA_ 2 d1v9fa_ 3 c1qyuA_ 4 d1v9ka_ 5 c2i82D_ 6 c1vioA_ 7 c1kskA_ 8 c2omlA_ 9 c2olwB_ 10 c3dh3C_ 11 d1kska4 12 d1vioa1 13 c2gmlA_ 14 d1k8wa5 15 d1sgva2 16 d2apoa2 17 d2ey4a2 18 c2ey4A_ 19 d1r3ea2 20 c3uaiA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1v9fA_ 100.0 28 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli 2 d1v9fa_ 100.0 28 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 3 c1qyuA_ 100.0 27 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud 4 d1v9ka_ 100.0 34 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 5 c2i82D_ 100.0 36 PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure 6 c1vioA_ 100.0 21 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase 7 c1kskA_ 100.0 19 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua 8 c2omlA_ 100.0 19 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 9 c2olwB_ 100.0 19 PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 10 c3dh3C_ 100.0 20 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 11 d1kska4 100.0 18 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 12 d1vioa1 100.0 21 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 13 c2gmlA_ 100.0 21 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf 14 d1k8wa5 97.7 20 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 15 d1sgva2 97.6 27 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 16 d2apoa2 97.5 22 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 17 d2ey4a2 97.5 23 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 18 c2ey4A_ 97.4 23 PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex 19 d1r3ea2 97.4 20 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 20 c3uaiA_ 97.1 26 PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae 21 c2apoA_ not modelled 97.0 21 PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex 22 c1k8wA_ not modelled 97.0 20 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 23 c1sgvA_ not modelled 96.6 27 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) 24 c1ze2B_ not modelled 95.1 28 PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate 25 c3n1tE_ not modelled 24.0 42 PDB header:hydrolase Chain: E: PDB Molecule:hit-like protein hint; PDBTitle: crystal structure of the h101a mutant echint gmp complex 26 d1rzya_ not modelled 22.8 25 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 27 c2zodB_ not modelled 21.9 23 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus 28 c3l7xA_ not modelled 21.4 33 PDB header:cell cycle Chain: A: PDB Molecule:putative hit-like protein involved in cell-cycle PDBTitle: the crystal structure of smu.412c from streptococcus mutans ua159 29 d1emsa1 not modelled 20.0 17 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 30 c1mzwB_ not modelled 18.7 31 PDB header:isomerase Chain: B: PDB Molecule:u4/u6 snrnp 60kda protein; PDBTitle: crystal structure of a u4/u6 snrnp complex between human2 spliceosomal cyclophilin h and a u4/u6-60k peptide 31 d1kpfa_ not modelled 16.6 25 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 32 d1fita_ not modelled 15.3 18 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 33 c3o0mB_ not modelled 15.0 25 PDB header:hydrolase Chain: B: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zn-bound histidine triad family protein from2 mycobacterium smegmatis 34 c1emsB_ not modelled 14.7 17 PDB header:antitumor protein Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein; PDBTitle: crystal structure of the c. elegans nitfhit protein 35 c2zauB_ not modelled 13.0 24 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus 36 d1guqa2 not modelled 12.2 25 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 37 c3p0tB_ not modelled 12.0 33 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an hit-like protein from mycobacterium2 paratuberculosis 38 d1qwga_ not modelled 11.1 14 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 39 d2oika1 not modelled 10.2 50 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 40 c3lb5B_ not modelled 10.1 23 PDB header:cell cycle Chain: B: PDB Molecule:hit-like protein involved in cell-cycle regulation; PDBTitle: crystal structure of hit-like protein involved in cell-cycle2 regulation from bartonella henselae with unknown ligand 41 c2jv2A_ not modelled 10.0 7 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein ph1500; PDBTitle: solution structure of the n-terminal domain of ph1500 42 d2aaaa1 not modelled 10.0 29 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 43 c1xquA_ not modelled 9.6 42 PDB header:hydrolase Chain: A: PDB Molecule:hit family hydrolase; PDBTitle: hit family hydrolase from clostridium thermocellum cth-393 44 d1xqua_ not modelled 9.6 42 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 45 c3zrhA_ not modelled 9.4 31 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase zranb1; PDBTitle: crystal structure of the lys29, lys33-linkage-specific trabid otu2 deubiquitinase domain reveals an ankyrin-repeat ubiquitin binding3 domain (ankubd) 46 d1gr0a1 not modelled 9.3 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 47 c2lf6A_ not modelled 9.2 24 PDB header:signaling protein Chain: A: PDB Molecule:effector protein hopab1; PDBTitle: solution nmr structure of hopabpph1448_220_320 from pseudomonas2 syringae pv. phaseolicola str. 1448a, midwest center for structural3 genomics target apc40132.4 and northeast structural genomics4 consortium target pst3a 48 d2zoda2 not modelled 8.4 17 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 49 d1vjpa1 not modelled 7.8 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 50 c2do5A_ not modelled 7.8 35 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:splicing factor 3b subunit 2; PDBTitle: solution structure of the sap domain of human splicing2 factor 3b subunit 2 51 c3ksvA_ not modelled 7.7 8 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: hypothetical protein from leishmania major 52 c2oi2A_ not modelled 7.5 13 PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: streptococcus pneumoniae mevalonate kinase in complex with2 diphosphomevalonate 53 c2eo4A_ not modelled 7.4 36 PDB header:hydrolase Chain: A: PDB Molecule:150aa long hypothetical histidine triad nucleotide-binding PDBTitle: crystal structure of hypothetical histidine triad nucleotide-binding2 protein st2152 from sulfolobus tokodaii strain7 54 c3oj7A_ not modelled 6.9 33 PDB header:metal binding protein Chain: A: PDB Molecule:putative histidine triad family protein; PDBTitle: crystal structure of a histidine triad family protein from entamoeba2 histolytica, bound to sulfate 55 d1k8ga2 not modelled 6.8 27 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 56 c2lkyA_ not modelled 6.8 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b 57 c1u83A_ not modelled 6.6 14 PDB header:lyase Chain: A: PDB Molecule:phosphosulfolactate synthase; PDBTitle: psl synthase from bacillus subtilis 58 d1u83a_ not modelled 6.6 14 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 59 c3imiB_ not modelled 6.4 33 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hit family protein; PDBTitle: 2.01 angstrom resolution crystal structure of a hit family protein2 from bacillus anthracis str. 'ames ancestor' 60 c3anoA_ not modelled 6.4 18 PDB header:transferase Chain: A: PDB Molecule:ap-4-a phosphorylase; PDBTitle: crystal structure of a novel diadenosine 5',5'''-p1,p4-tetraphosphate2 phosphorylase from mycobacterium tuberculosis h37rv 61 c1e0aB_ not modelled 6.4 28 PDB header:signalling protein Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha; PDBTitle: cdc42 complexed with the gtpase binding domain of p212 activated kinase 62 c2kvcA_ not modelled 6.4 31 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 63 d1u2ca2 not modelled 6.2 27 Fold:Dystroglycan, domain 2 Superfamily:Dystroglycan, domain 2 Family:Dystroglycan, domain 2 64 d1jb7a2 not modelled 6.1 27 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 65 d1w91a1 not modelled 6.1 36 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 66 d2al1a1 not modelled 6.1 11 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 67 d2guya1 not modelled 6.0 27 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 68 c2odbB_ not modelled 6.0 31 PDB header:protein binding Chain: B: PDB Molecule:serine/threonine-protein kinase pak 6; PDBTitle: the crystal structure of human cdc42 in complex with the crib domain2 of human p21-activated kinase 6 (pak6) 69 c1u1iC_ not modelled 5.7 16 PDB header:isomerase Chain: C: PDB Molecule:myo-inositol-1-phosphate synthase; PDBTitle: myo-inositol phosphate synthase mips from a. fulgidus 70 d1z84a2 not modelled 5.4 17 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 71 d2hx5a1 not modelled 5.1 14 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0