Phyre 2 alignment of P0AA41 with c2ey4A_

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Job Description | P0AA41
Confidence | 97.43% | Date | Thu Jan 5 11:11:52 GMT 2012
Rank | 18 | Aligned Residues | 70
% Identity | 23% | Template | c2ey4A_
PDB info | PDB header:isomerase/biosynthetic protein | Chain: A: PDB Molecule:probable trna pseudouridine synthase b; | PDBTitle: crystal structure of a cbf5-nop10-gar1 complex
Resolution | 2.11 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | E | W | L | V | A | V | N | K | P | S | G | W | L | V | H | R | S | W | L | D | R | D | E | K | V | V | V | M | Q | T | V | R | D | Q | I | G | Q | H | V | F | T | A | H | R | L | D | R | P | T | S | G | V | L | L | M | G | L | S | S | E | A | G | R | L | L | A | Q | Q | F | E | Q | H | Q | I | Q | K | R | Y | H | A
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |
Template Sequence |  | F | G | V | I | N | L | D | K | P | P | G | P | . | . | . | . | . | . | . | . | . | T | S | H | E | V | V | A | W | I | K | K | I | L | N | L | E | K | A | G | H | G | G | T | L | D | P | K | V | S | G | V | L | P | V | A | L | E | K | A | T | . | . | R | V | V | Q | A | L | L | P | A | G | . | . | K | E | Y | V | A
Template Known Secondary structure |  | T |  |  |  |  |  |  |  |  | S | S | S | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  | S |  |  |  |  | S | S |  |  |  | T | T |  |  |  |  |  |  |  |  |  | G | G | G | G | . | . | G | G |  |  |  |  | T | T | S |  | . | . |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 49 | 50 | . | . | . | . | . | . | . | . | . | 60 |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 |  |  | . | . | . | . | . | . | . | . | . | 110 |  |  | . | . | . | . | .
|  | 89 | 90 | .
Predicted Secondary structure |  |  |  |
Query SS confidence |  |  |  |
Query Sequence |  | I | V | R
Query Conservation |  |  |  |
Alig confidence |  |  |  |
Template Conservation |  |  |  |
Template Sequence |  | L | M | H
Template Known Secondary structure |  |  |  |
Template Predicted Secondary structure |  |  |  |
Template SS confidence |  |  |  |
|  | 116 | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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