Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77714
DateThu Jan 5 12:31:58 GMT 2012
Unique Job IDa26bb4299ce042ed

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2gmha3
Top template information
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:ETF-QO domain-like
Confidence and coverage
Confidence: 99.7% Coverage: 91%
88 residues ( 91% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSQNATVNVDIKLGVNKFHVDEGHPHIILAENPDINEFHKLMKACPAGLYKQDDAGNIHF
Secondary structure 




































SS confidence 



























































Disorder  ?????????


















































Disorder confidence 



























































 
   .........70.........80.........90.......
Sequence  DSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG
Secondary structure 























SS confidence 




































Disorder 
























?



???????
Disorder confidence 




































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2gmh chain A domain 3

3D model

Region: 8 - 96
Aligned: 88
Modelled: 82
Confidence: 99.7%
Identity: 19%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: ETF-QO domain-like

Phyre2

PDB 2gmh chain A

3D model

Region: 19 - 96
Aligned: 76
Modelled: 78
Confidence: 99.7%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone

Phyre2

PDB 2ivf chain B

3D model

Region: 21 - 88
Aligned: 67
Modelled: 68
Confidence: 99.5%
Identity: 16%
PDB header:oxidoreductase
Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum

Phyre2

PDB 1y5i chain B domain 1

3D model

Region: 24 - 86
Aligned: 63
Modelled: 63
Confidence: 99.5%
Identity: 14%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 7fd1 chain A

3D model

Region: 28 - 88
Aligned: 60
Modelled: 61
Confidence: 99.4%
Identity: 13%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: 7-Fe ferredoxin

Phyre2

PDB 1bc6 chain A

3D model

Region: 28 - 86
Aligned: 58
Modelled: 59
Confidence: 99.4%
Identity: 19%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: 7-Fe ferredoxin

Phyre2

PDB 1ti2 chain F

3D model

Region: 21 - 88
Aligned: 66
Modelled: 68
Confidence: 99.4%
Identity: 12%
PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici

Phyre2

PDB 1gth chain D

3D model

Region: 28 - 86
Aligned: 58
Modelled: 59
Confidence: 99.4%
Identity: 17%
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil

Phyre2

PDB 3gyx chain J

3D model

Region: 27 - 91
Aligned: 65
Modelled: 65
Confidence: 99.3%
Identity: 17%
PDB header:oxidoreductase
Chain: J: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas

Phyre2

PDB 1hfe chain L domain 2

3D model

Region: 22 - 82
Aligned: 60
Modelled: 61
Confidence: 99.3%
Identity: 15%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1h98 chain A

3D model

Region: 28 - 87
Aligned: 59
Modelled: 60
Confidence: 99.3%
Identity: 15%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: 7-Fe ferredoxin

Phyre2

PDB 1hfe chain L

3D model

Region: 11 - 86
Aligned: 75
Modelled: 76
Confidence: 99.3%
Identity: 13%
PDB header:hydrogenase
Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1)
PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans

Phyre2

PDB 1gx7 chain A

3D model

Region: 26 - 86
Aligned: 60
Modelled: 61
Confidence: 99.3%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit;
PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase

Phyre2

PDB 2fug chain G

3D model

Region: 21 - 87
Aligned: 66
Modelled: 67
Confidence: 99.3%
Identity: 23%
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus

Phyre2

PDB 2fug chain 9 domain 1

3D model

Region: 21 - 87
Aligned: 66
Modelled: 67
Confidence: 99.3%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1kqf chain B

3D model

Region: 21 - 86
Aligned: 66
Modelled: 66
Confidence: 99.3%
Identity: 24%
PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli

Phyre2

PDB 1jnr chain B

3D model

Region: 28 - 81
Aligned: 54
Modelled: 54
Confidence: 99.3%
Identity: 17%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 3c7b chain B domain 1

3D model

Region: 24 - 87
Aligned: 61
Modelled: 64
Confidence: 99.2%
Identity: 30%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1kqf chain B domain 1

3D model

Region: 21 - 88
Aligned: 67
Modelled: 68
Confidence: 99.2%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1xer chain A

3D model

Region: 24 - 86
Aligned: 61
Modelled: 63
Confidence: 99.2%
Identity: 18%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Archaeal ferredoxins

Phyre2
1

d2gmha3
2

c2gmhA_
3

c2ivfB_
4

d1y5ib1
5

d7fd1a_
6

d1bc6a_
7

c1ti2F_
8

c1gthD_
9

c3gyxJ_
10

d1hfel2
11

d1h98a_
12

c1hfeL_
13

c1gx7A_
14

c2fugG_
15

d2fug91
16

c1kqfB_
17

d1jnrb_
18

d3c7bb1
19

d1kqfb1
20

d1xera_
21



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76



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78



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2gmha3



99.7 19 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:ETF-QO domain-like
2c2gmhA_



99.7 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone
3c2ivfB_



99.5 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
4d1y5ib1



99.5 14 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
5d7fd1a_



99.4 13 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
6d1bc6a_



99.4 19 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
7c1ti2F_



99.4 12 PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici
8c1gthD_



99.4 17 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
9c3gyxJ_



99.3 17 PDB header:oxidoreductase
Chain: J: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
10d1hfel2



99.3 15 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
11d1h98a_



99.3 15 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
12c1hfeL_



99.3 13 PDB header:hydrogenase
Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1)
PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans
13c1gx7A_



99.3 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit;
PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase
14c2fugG_



99.3 23 PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
15d2fug91



99.3 23 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
16c1kqfB_



99.3 24 PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli
17d1jnrb_



99.3 17 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
18d3c7bb1



99.2 30 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
19d1kqfb1



99.2 24 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
20d1xera_



99.2 18 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Archaeal ferredoxins
21d1fcaa_



not modelled 99.2 21 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
22c2v2kB_



not modelled 99.2 15 PDB header:electron transport
Chain: B: PDB Molecule:ferredoxin;
PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis
23d2fdna_



not modelled 99.2 19 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
24d1dura_



not modelled 99.2 20 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
25c2vpyB_



not modelled 99.2 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:nrfc protein;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
26d1clfa_



not modelled 99.2 19 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
27d3c8ya3



not modelled 99.1 21 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
28c2zvsB_



not modelled 99.1 20 PDB header:electron transport
Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl;
PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli
29d1jb0c_



not modelled 99.1 20 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
30d1gtea5



not modelled 99.1 17 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
31c2c3yA_



not modelled 99.1 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus
32d1vlfn2



not modelled 99.0 13 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
33d1blua_



not modelled 99.0 19 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
34d2fug34



not modelled 99.0 14 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
35d1rgva_



not modelled 99.0 17 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
36c2fgoA_



not modelled 99.0 22 PDB header:electron transport
Chain: A: PDB Molecule:ferredoxin;
PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa
37c1c4cA_



not modelled 98.9 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
38c3bk7A_



not modelled 98.9 20 PDB header:hydrolyase/translation
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii
39c3c7bE_



not modelled 98.9 25 PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
40d1h0hb_



not modelled 98.9 7 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
41d2c42a5



not modelled 98.8 21 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
42c3c7bA_



not modelled 98.8 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
43c2v4jE_



not modelled 98.7 17 PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
44d1iqza_



not modelled 98.7 15 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
45d1vjwa_



not modelled 98.7 11 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
46c2v4jA_



not modelled 98.6 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
47c1dwlA_



not modelled 98.5 11 PDB header:electron transfer
Chain: A: PDB Molecule:ferredoxin i;
PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation
48c2fugC_



not modelled 98.4 14 PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
49d1sj1a_



not modelled 98.3 11 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
50d1fxra_



not modelled 98.1 12 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
51d2v4jb1



not modelled 97.5 22 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
52d1kf6b1



not modelled 96.6 28 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
53d2bs2b1



not modelled 96.3 22 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
54c2b76N_



not modelled 96.2 19 PDB header:oxidoreductase
Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein;
PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
55d1nekb1



not modelled 95.9 24 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
56c2bs2E_



not modelled 95.8 11 PDB header:oxidoreductase
Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b;
PDBTitle: quinol:fumarate reductase from wolinella succinogenes
57d3c7ba1



not modelled 95.8 32 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
58d2v4ja1



not modelled 95.8 26 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
59c1nekB_



not modelled 95.7 25 PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound
60c2h89B_



not modelled 95.1 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:succinate dehydrogenase ip subunit;
PDBTitle: avian respiratory complex ii with malonate bound
61c3cf4A_



not modelled 95.1 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit;
PDBTitle: structure of the codh component of the m. barkeri acds complex
62c2vdcI_



not modelled 79.4 35 PDB header:oxidoreductase
Chain: I: PDB Molecule:glutamate synthase [nadph] small chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.
63d1gtea1



not modelled 25.9 29 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Dihydropyrimidine dehydrogenase, N-terminal domain
64c1g8jC_



not modelled 24.9 24 PDB header:oxidoreductase
Chain: C: PDB Molecule:arsenite oxidase;
PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis
65d1g8ka2



not modelled 21.1 19 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
66d1fxda_



not modelled 15.0 21 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
67c2pmzS_



not modelled 14.6 22 PDB header:translation, transferase
Chain: S: PDB Molecule:dna-directed rna polymerase subunit d;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
68d1ftra1



not modelled 11.7 18 Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
69d2o5ha1



not modelled 11.0 14 Fold:NMB0513-like
Superfamily:NMB0513-like
Family:NMB0513-like
70d1m5ha1



not modelled 10.9 14 Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
71c2qasA_



not modelled 10.1 20 PDB header:hydrolase activator
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of caulobacter crescentus sspb ortholog
72c2fhjD_



not modelled 9.6 18 PDB header:transferase
Chain: D: PDB Molecule:formylmethanofuran--tetrahydromethanopterin
PDBTitle: crystal structure of formylmethanofuran:2 tetrahydromethanopterin formyltransferase in complex with3 its coenzymes
73c2esyA_



not modelled 8.4 67 PDB header:lipid binding protein
Chain: A: PDB Molecule:lung surfactant protein c;
PDBTitle: structure and influence on stability and activity of the n-2 terminal propetide part of lung surfactant protein c
74c2qazC_



not modelled 7.8 21 PDB header:hydrolase activator
Chain: C: PDB Molecule:sspb protein;
PDBTitle: structure of c. crescentus sspb ortholog
75c2fugA_



not modelled 7.7 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
76d2nysa1



not modelled 7.1 16 Fold:SspB-like
Superfamily:SspB-like
Family:AGR C 3712p-like
77c2nysA_



not modelled 7.1 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:agr_c_3712p;
PDBTitle: x-ray crystal structure of protein agr_c_3712 from2 agrobacterium tumefaciens. northeast structural genomics3 consortium target atr88.
78d1h6ua1



not modelled 6.2 6 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Internalin Ig-like domain
79d1ou9a_



not modelled 6.2 11 Fold:SspB-like
Superfamily:SspB-like
Family:Stringent starvation protein B, SspB
80c1igrA_



not modelled 5.9 23 PDB header:hormone receptor
Chain: A: PDB Molecule:insulin-like growth factor receptor 1;
PDBTitle: type 1 insulin-like growth factor receptor (domains 1-3)
81d1zszc1



not modelled 5.7 11 Fold:SspB-like
Superfamily:SspB-like
Family:Stringent starvation protein B, SspB
82d1h6ta1



not modelled 5.5 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Internalin Ig-like domain
83d1fjra_



not modelled 5.3 12 Fold:Methuselah ectodomain
Superfamily:Methuselah ectodomain
Family:Methuselah ectodomain
84c1y88A_



not modelled 5.2 40 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af1548;
PDBTitle: crystal structure of protein of unknown function af1548

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0