Email l.a.kelley@imperial.ac.uk Description P46022 Date Thu Jan 5 12:03:55 GMT 2012 Unique Job ID a0f16afa0265c34b

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3dwkC_ 100.0 30 PDB header:transferase Chain: C: PDB Molecule:penicillin-binding protein 2; PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer 2 c2olvA_ 100.0 30 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein 2; PDBTitle: structural insight into the transglycosylation step of bacterial cell2 wall biosynthesis : donor ligand complex 3 c3hzsA_ 100.0 31 PDB header:transferase Chain: A: PDB Molecule:monofunctional glycosyltransferase; PDBTitle: s. aureus monofunctional glycosyltransferase (mtga)in complex with2 moenomycin 4 d2oqoa1 100.0 40 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 5 d2olua1 100.0 30 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 6 c3fwlA_ 100.0 30 PDB header:transferase, hydrolase Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: crystal structure of the full-length transglycosylase pbp1b2 from escherichia coli 7 c3udiA_ 100.0 32 PDB header:penicillin-binding protein/antibiotic Chain: A: PDB Molecule:penicillin-binding protein 1a; PDBTitle: crystal structure of acinetobacter baumannii pbp1a in complex with2 penicillin g 8 c2wadB_ 98.5 7 PDB header:peptide binding protein Chain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204) 9 c1pmdA_ 90.7 13 PDB header:peptidoglycan synthesis Chain: A: PDB Molecule:peptidoglycan synthesis multifunctional enzyme; PDBTitle: penicillin-binding protein 2x (pbp-2x) 10 d1mv8a1 49.4 16 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain 11 d1dlja1 37.4 16 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain 12 c3zriA_ 28.4 15 PDB header:chaperone Chain: A: PDB Molecule:clpb protein; PDBTitle: n-domain of clpv from vibrio cholerae 13 d1qvra1 28.3 15 Fold:Double Clp-N motif Superfamily:Double Clp-N motif Family:Double Clp-N motif 14 d2ieaa3 27.7 17 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Transketolase C-terminal domain-like 15 d2guka1 27.1 25 Fold:PG1857-like Superfamily:PG1857-like Family:PG1857-like 16 c2k77A_ 26.9 11 PDB header:chaperone, protein binding Chain: A: PDB Molecule:negative regulator of genetic competence PDBTitle: nmr solution structure of the bacillus subtilis clpc n-2 domain 17 c3fesB_ 26.3 22 PDB header:atp binding protein Chain: B: PDB Molecule:atp-dependent clp endopeptidase; PDBTitle: crystal structure of the atp-dependent clp protease clpc from2 clostridium difficile 18 d1e6vb2 26.1 21 Fold:Ferredoxin-like Superfamily:Methyl-coenzyme M reductase subunits Family:Methyl-coenzyme M reductase alpha and beta chain N-terminal domain 19 d1hbnb2 24.3 17 Fold:Ferredoxin-like Superfamily:Methyl-coenzyme M reductase subunits Family:Methyl-coenzyme M reductase alpha and beta chain N-terminal domain 20 d3broa1 17.8 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 21 d2iyva1 not modelled 15.9 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 22 d2fbha1 not modelled 15.1 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 23 c3kaeC_ not modelled 13.9 30 PDB header:protein binding Chain: C: PDB Molecule:possible protein of nuclear scaffold; PDBTitle: cdc27 n-terminus 24 c3gg2B_ not modelled 13.8 16 PDB header:oxidoreductase Chain: B: PDB Molecule:sugar dehydrogenase, udp-glucose/gdp-mannose PDBTitle: crystal structure of udp-glucose 6-dehydrogenase from2 porphyromonas gingivalis bound to product udp-glucuronate 25 c2cv8A_ not modelled 13.1 29 PDB header:hydrolase Chain: A: PDB Molecule:trna-splicing endonuclease; PDBTitle: crystal structure of trna-intron endonuclease from2 sulfolobus tokodaii 26 d1q3ta_ not modelled 12.4 28 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 27 c2kvrA_ not modelled 11.7 33 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 7; PDBTitle: solution nmr structure of human ubiquitin specific protease2 usp7 ubl domain (residues 537-664). nesg target hr4395c/3 sgc-toronto 28 c3sqgE_ not modelled 11.4 21 PDB header:transferase Chain: E: PDB Molecule:methyl-coenzyme m reductase, beta subunit; PDBTitle: crystal structure of a methyl-coenzyme m reductase purified from black2 sea mats 29 c1hbmE_ not modelled 11.4 17 PDB header:methanogenesis Chain: E: PDB Molecule:methyl-coenzyme m reductase i beta subunit; PDBTitle: methyl-coenzyme m reductase enzyme product complex 30 c3fdfA_ not modelled 11.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fr253; PDBTitle: crystal structure of the serine phosphatase of rna2 polymerase ii ctd (ssu72 superfamily) from drosophila3 melanogaster. orthorhombic crystal form. northeast4 structural genomics consortium target fr253. 31 d1gpqa_ not modelled 11.3 26 Fold:Inhibitor of vertebrate lysozyme, Ivy Superfamily:Inhibitor of vertebrate lysozyme, Ivy Family:Inhibitor of vertebrate lysozyme, Ivy 32 c2dvwB_ not modelled 11.3 13 PDB header:cell cycle/protein-binding Chain: B: PDB Molecule:26s protease regulatory subunit 6b; PDBTitle: structure of the oncoprotein gankyrin in complex with s62 atpase of the 26s proteasome 33 c3ajvD_ not modelled 11.1 33 PDB header:hydrolase Chain: D: PDB Molecule:trna-splicing endonuclease; PDBTitle: splicing endonuclease from aeropyrum pernix 34 c3bj6B_ not modelled 11.0 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579 35 c2l9mA_ not modelled 10.7 16 PDB header:apoptosis inhibitor Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 2; PDBTitle: structure of ciap1 card 36 c1gr0A_ not modelled 9.9 27 PDB header:isomerase Chain: A: PDB Molecule:inositol-3-phosphate synthase; PDBTitle: myo-inositol 1-phosphate synthase from mycobacterium2 tuberculosis in complex with nad and zinc. 37 d1e6ca_ not modelled 9.7 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 38 c2dzoD_ not modelled 9.6 14 PDB header:protein binding Chain: D: PDB Molecule:26s protease regulatory subunit 6b homolog; PDBTitle: crystal structure analysis of yeast nas6p complexed with2 the proteasome subunit, rpt3 39 c3r84F_ not modelled 9.5 30 PDB header:transcription Chain: F: PDB Molecule:mediator of rna polymerase ii transcription subunit 22; PDBTitle: structure of the mediator head subcomplex med11/22 40 c3o2qB_ not modelled 9.4 17 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex 41 d1dgna_ not modelled 9.3 16 Fold:DEATH domain Superfamily:DEATH domain Family:Caspase recruitment domain, CARD 42 c3r0aB_ not modelled 9.1 20 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196) 43 c1mv8A_ not modelled 8.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:gdp-mannose 6-dehydrogenase; PDBTitle: 1.55 a crystal structure of a ternary complex of gdp-mannose2 dehydrogenase from psuedomonas aeruginosa 44 c3nqoB_ not modelled 8.7 16 PDB header:transcription Chain: B: PDB Molecule:marr-family transcriptional regulator; PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution 45 d1k6ma1 not modelled 8.6 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain 46 d1m8pa3 not modelled 8.5 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 47 c3csqC_ not modelled 8.1 11 PDB header:hydrolase Chain: C: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail 48 c1zuiA_ not modelled 8.1 19 PDB header:transferase Chain: A: PDB Molecule:shikimate kinase; PDBTitle: structural basis for shikimate-binding specificity of helicobacter2 pylori shikimate kinase 49 c2pbyB_ not modelled 8.1 20 PDB header:hydrolase Chain: B: PDB Molecule:glutaminase; PDBTitle: probable glutaminase from geobacillus kaustophilus hta426 50 c2eg5C_ not modelled 8.0 21 PDB header:transferase Chain: C: PDB Molecule:xanthosine methyltransferase; PDBTitle: the structure of xanthosine methyltransferase 51 d2dw4a1 not modelled 8.0 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:SWIRM domain 52 d1tdza1 not modelled 7.9 13 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 53 d1rkba_ not modelled 7.9 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 54 d1kaga_ not modelled 7.8 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 55 d1k82a1 not modelled 7.8 8 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 56 c3prjB_ not modelled 7.7 11 PDB header:oxidoreductase Chain: B: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: role of packing defects in the evolution of allostery and induced fit2 in human udp-glucose dehydrogenase. 57 d1m6ex_ not modelled 7.6 37 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Salicylic acid carboxyl methyltransferase (SAMT) 58 d2grrb1 not modelled 7.5 17 Fold:alpha-alpha superhelix Superfamily:Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain Family:Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain 59 d2htja1 not modelled 7.5 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FaeA-like 60 d1gr0a1 not modelled 7.4 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 61 c3o2sB_ not modelled 7.2 17 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72 complex 62 d1b79a_ not modelled 7.1 18 Fold:N-terminal domain of DnaB helicase Superfamily:N-terminal domain of DnaB helicase Family:N-terminal domain of DnaB helicase 63 d1r2za1 not modelled 6.7 17 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 64 c2h2wA_ not modelled 6.6 13 PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution 65 d1b7go2 not modelled 6.5 32 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 66 c2rh5B_ not modelled 6.4 19 PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: structure of apo adenylate kinase from aquifex aeolicus 67 c2wgoA_ not modelled 6.3 43 PDB header:surfactant protein Chain: A: PDB Molecule:ranaspumin-2; PDBTitle: structure of ranaspumin-2, a surfactant protein from the2 foam nests of a tropical frog 68 c1x1qA_ not modelled 6.3 18 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8 69 c3cuqD_ not modelled 6.3 12 PDB header:protein transport Chain: D: PDB Molecule:vacuolar protein-sorting-associated protein 25; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 70 c1rqtB_ not modelled 6.3 22 PDB header:ribosome Chain: B: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli 71 c1rqtA_ not modelled 6.3 22 PDB header:ribosome Chain: A: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli 72 d1rqta_ not modelled 6.3 22 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 73 c3imkA_ not modelled 6.2 14 PDB header:metal binding protein Chain: A: PDB Molecule:putative molybdenum carrier protein; PDBTitle: crystal structure of putative molybdenum carrier protein (yp_461806.1)2 from syntrophus aciditrophicus sb at 1.45 a resolution 74 d1jeqa1 not modelled 6.2 23 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 75 d1jwea_ not modelled 6.2 19 Fold:N-terminal domain of DnaB helicase Superfamily:N-terminal domain of DnaB helicase Family:N-terminal domain of DnaB helicase 76 c2q3eH_ not modelled 6.1 11 PDB header:oxidoreductase Chain: H: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: structure of human udp-glucose dehydrogenase complexed with nadh and2 udp-glucose 77 d1rz4a2 not modelled 6.1 18 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain 78 c3omdB_ not modelled 6.1 32 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum 79 c3akcA_ not modelled 6.0 21 PDB header:transferase Chain: A: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cmp kinase in complex with cdp and adp from2 thermus thermophilus hb8 80 c3cwbQ_ not modelled 6.0 24 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 81 c2a6eF_ not modelled 5.9 15 PDB header:transferase Chain: F: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: crystal structure of the t. thermophilus rna polymerase2 holoenzyme 82 c3fh2A_ not modelled 5.8 11 PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent protease (heat shock protein); PDBTitle: the crystal structure of the probable atp-dependent protease (heat2 shock protein) from corynebacterium glutamicum 83 d1lk3a_ not modelled 5.8 13 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Interferons/interleukin-10 (IL-10) 84 d1vhxa_ not modelled 5.8 24 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 85 c3fdiA_ not modelled 5.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein from eubacterium2 ventriosum atcc 27560. 86 d2czca1 not modelled 5.6 17 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 87 c3b5iB_ not modelled 5.6 16 PDB header:transferase Chain: B: PDB Molecule:s-adenosyl-l-methionine:salicylic acid carboxyl PDBTitle: crystal structure of indole-3-acetic acid methyltransferase 88 c1jjrA_ not modelled 5.6 23 PDB header:dna binding protein Chain: A: PDB Molecule:thyroid autoantigen; PDBTitle: the three-dimensional structure of the c-terminal dna2 binding domain of human ku70 89 d1mkia_ not modelled 5.5 15 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Glutaminase 90 d1ee8a1 not modelled 5.5 25 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 91 c3uo9B_ not modelled 5.5 24 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial; PDBTitle: crystal structure of human gac in complex with glutamate and bptes 92 c2nyxB_ not modelled 5.5 9 PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis 93 d1tfra1 not modelled 5.3 17 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 94 d1ux8a_ not modelled 5.3 17 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 95 c3nw0B_ not modelled 5.3 23 PDB header:metal binding protein Chain: B: PDB Molecule:melanoma-associated antigen g1; PDBTitle: crystal structure of mageg1 and nse1 complex 96 c1z1sA_ not modelled 5.3 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa3332; PDBTitle: crystal structure of putative isomerase pa3332 from2 pseudomonas aeruginosa 97 c3iz6M_ not modelled 5.2 37 PDB header:ribosome Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 98 c3ss4C_ not modelled 5.2 24 PDB header:hydrolase Chain: C: PDB Molecule:glutaminase c; PDBTitle: crystal structure of mouse glutaminase c, phosphate-bound form 99 c3g79A_ not modelled 5.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1