Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP39199
DateThu Jan 5 11:58:28 GMT 2012
Unique Job IDa057197707c028ab

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2b3ta1
Top template information
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N5-glutamine methyltransferase, HemK
Confidence and coverage
Confidence:100.0% Coverage: 87%
269 residues ( 87% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDEAVQLVLPSLYLPLDIP
Secondary structure 



















SS confidence 



























































Disorder  ???
???




?
















???????






















Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  EDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLVPRSPIGEL
Secondary structure 






















SS confidence 



























































Disorder 
?

????



















































Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  INNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHG
Secondary structure 


















SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........190.........200.........210.........220.........230.........240
Sequence  LIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLKL
Secondary structure 





























SS confidence 



























































Disorder 




































??




















Disorder confidence 



























































 
   .........250.........260.........270.........280.........290.........300
Sequence  TRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDVPFTWLEFDNGGDGVFMLTKEQLIA
Secondary structure 

















SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........310
Sequence  AREHFAIYKD
Secondary structure 


SS confidence 









Disorder 





????
Disorder confidence 









 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2b3t chain A domain 1

3D model

Region: 16 - 295
Aligned: 269
Modelled: 280
Confidence: 100.0%
Identity: 28%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: N5-glutamine methyltransferase, HemK

Phyre2

PDB 1nv8 chain A

3D model

Region: 14 - 296
Aligned: 266
Modelled: 283
Confidence: 100.0%
Identity: 25%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: N5-glutamine methyltransferase, HemK

Phyre2

PDB 3evz chain A

3D model

Region: 97 - 296
Aligned: 175
Modelled: 179
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: crystal strucure of methyltransferase from pyrococcus furiosus

Phyre2

PDB 2h00 chain A domain 1

3D model

Region: 97 - 294
Aligned: 183
Modelled: 183
Confidence: 100.0%
Identity: 21%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Methyltransferase 10 domain

Phyre2

PDB 3ocj chain A

3D model

Region: 37 - 296
Aligned: 235
Modelled: 237
Confidence: 99.9%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis

Phyre2

PDB 3dmg chain A

3D model

Region: 101 - 296
Aligned: 172
Modelled: 176
Confidence: 99.9%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase;
PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy

Phyre2

PDB 2pjd chain A

3D model

Region: 101 - 260
Aligned: 133
Modelled: 140
Confidence: 99.9%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase c;
PDBTitle: crystal structure of 16s rrna methyltransferase rsmc

Phyre2

PDB 1dus chain A

3D model

Region: 91 - 268
Aligned: 148
Modelled: 150
Confidence: 99.9%
Identity: 24%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Hypothetical protein MJ0882

Phyre2

PDB 2fhp chain A domain 1

3D model

Region: 93 - 265
Aligned: 145
Modelled: 149
Confidence: 99.9%
Identity: 24%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: YhhF-like

Phyre2

PDB 3q87 chain B

3D model

Region: 109 - 283
Aligned: 144
Modelled: 165
Confidence: 99.9%
Identity: 19%
PDB header:transferase activator/transferase
Chain: B: PDB Molecule:n6 adenine specific dna methylase;
PDBTitle: structure of eukaryotic translation termination complex2 methyltransferase mtq2-trm112

Phyre2

PDB 2nxc chain A domain 1

3D model

Region: 100 - 296
Aligned: 161
Modelled: 166
Confidence: 99.9%
Identity: 24%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Ribosomal protein L11 methyltransferase PrmA

Phyre2

PDB 3p9n chain A

3D model

Region: 110 - 265
Aligned: 130
Modelled: 132
Confidence: 99.9%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:possible methyltransferase (methylase);
PDBTitle: rv2966c of m. tuberculosis is a rsmd-like methyltransferase

Phyre2

PDB 2as0 chain A domain 2

3D model

Region: 100 - 260
Aligned: 144
Modelled: 145
Confidence: 99.9%
Identity: 24%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: hypothetical RNA methyltransferase

Phyre2

PDB 3grz chain A

3D model

Region: 104 - 296
Aligned: 158
Modelled: 165
Confidence: 99.9%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase;
PDBTitle: crystal structure of ribosomal protein l11 methylase from2 lactobacillus delbrueckii subsp. bulgaricus

Phyre2

PDB 2ozv chain A

3D model

Region: 125 - 260
Aligned: 108
Modelled: 108
Confidence: 99.9%
Identity: 25%
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein atu0636;
PDBTitle: crystal structure of a predicted o-methyltransferase, protein atu6362 from agrobacterium tumefaciens.

Phyre2

PDB 1yzh chain A domain 1

3D model

Region: 126 - 264
Aligned: 122
Modelled: 122
Confidence: 99.9%
Identity: 18%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: TrmB-like

Phyre2

PDB 3e05 chain B

3D model

Region: 96 - 260
Aligned: 133
Modelled: 137
Confidence: 99.8%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:precorrin-6y c5,15-methyltransferase (decarboxylating);
PDBTitle: crystal structure of precorrin-6y c5,15-methyltransferase from2 geobacter metallireducens gs-15

Phyre2

PDB 3lpm chain A

3D model

Region: 130 - 283
Aligned: 125
Modelled: 125
Confidence: 99.8%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase small domain protein2 from listeria monocytogenes

Phyre2

PDB 2as0 chain A

3D model

Region: 100 - 260
Aligned: 144
Modelled: 145
Confidence: 99.8%
Identity: 25%
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ph1915;
PDBTitle: crystal structure of ph1915 (apc 5817): a hypothetical rna2 methyltransferase

Phyre2

PDB 2fpo chain A domain 1

3D model

Region: 108 - 262
Aligned: 127
Modelled: 129
Confidence: 99.8%
Identity: 17%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: YhhF-like

Phyre2
1

d2b3ta1
2

d1nv8a_
3

c3evzA_
4

d2h00a1
5

c3ocjA_
6

c3dmgA_
7

c2pjdA_
8

d1dusa_
9

d2fhpa1
10

c3q87B_
11

d2nxca1
12

c3p9nA_
13

d2as0a2
14

c3grzA_
15

c2ozvA_
16

d1yzha1
17

c3e05B_
18

c3lpmA_
19

c2as0A_
20

d2fpoa1
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99



100



101



102



103



104



105



106



107



108



109



110



111



112



113



114



115



116



117



118



119



120



121



122



123



124



125



126



127



128



129



130



131



132



133



134



135



136



137



138



139



140



141



142



143



144



145



146



147



148



149



150



151



152



153



154



155



156



157



158



159



160



161



162



163



164



165



166



167



168



169



170



171



172



173



174



175



176



177



178



179



180



181



182



183



184



185



186



187



188



189



190



191



192



193



194



195



196



197



198



199



200



201



202



203



204



205



206



207



208



209



210



211



212



213



214



215



216



217



218



219



220



221



222



223



224



225



226



227



228



229



230



231



232



233



234



235



236



237



238



239



240



241



242



243



244



245



246



247



248



249



250



251



252



253



254



255



256



257



258



259



260



261



262



263



264



265



266



267



268



269



270



271



272



273



274



275



276



277



278



279



280



281



282



283



284



285



286



287



288



289



290



291



292



293



294



295



296



297



298



299



300



301



302



303



304



305



306



307



308



309



310



311



312



313



314



315



316



317



318



319



320



321



322



323



324



325



326



327



328



329



330



331



332



333



334



335



336



337



338



339



340



341



342



343



344



345



346



347



348



349



350



351



352



353



354



355



356



357



358



359



360



361



362



363



364



365



366



367



368



369



370



371



372



373



374



375



376



377



378



379



380



381



382



383



384



385



386



387



388



389



390



391



392



393



394



395



396



397



398



399



400



401



402



403



404



405



406



407



408



409



410



411



412



413



414



415



416



417



418



419



420



421



422



423



424



425



426



427



428



429



430



431



432



433



434



435



436



437



438



439



440



441



442



443



444



445



446



447



448



449



450



451



452



453



454



455



456



457



458



459



460



461



462



463



464



465



466



467



468



469



470



471



472



473



474



475



476



477



478



479



480



481



482



483



484



485



486



487



488



489



490



491



492



493



494



495



496



497



498



499






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2b3ta1



100.0 28 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N5-glutamine methyltransferase, HemK
2d1nv8a_



100.0 25 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N5-glutamine methyltransferase, HemK
3c3evzA_



100.0 18 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: crystal strucure of methyltransferase from pyrococcus furiosus
4d2h00a1



100.0 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Methyltransferase 10 domain
5c3ocjA_



99.9 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis
6c3dmgA_



99.9 20 PDB header:transferase
Chain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase;
PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy
7c2pjdA_



99.9 22 PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase c;
PDBTitle: crystal structure of 16s rrna methyltransferase rsmc
8d1dusa_



99.9 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical protein MJ0882
9d2fhpa1



99.9 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
10c3q87B_



99.9 19 PDB header:transferase activator/transferase
Chain: B: PDB Molecule:n6 adenine specific dna methylase;
PDBTitle: structure of eukaryotic translation termination complex2 methyltransferase mtq2-trm112
11d2nxca1



99.9 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ribosomal protein L11 methyltransferase PrmA
12c3p9nA_



99.9 23 PDB header:transferase
Chain: A: PDB Molecule:possible methyltransferase (methylase);
PDBTitle: rv2966c of m. tuberculosis is a rsmd-like methyltransferase
13d2as0a2



99.9 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
14c3grzA_



99.9 22 PDB header:transferase
Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase;
PDBTitle: crystal structure of ribosomal protein l11 methylase from2 lactobacillus delbrueckii subsp. bulgaricus
15c2ozvA_



99.9 25 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein atu0636;
PDBTitle: crystal structure of a predicted o-methyltransferase, protein atu6362 from agrobacterium tumefaciens.
16d1yzha1



99.9 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
17c3e05B_



99.8 16 PDB header:transferase
Chain: B: PDB Molecule:precorrin-6y c5,15-methyltransferase (decarboxylating);
PDBTitle: crystal structure of precorrin-6y c5,15-methyltransferase from2 geobacter metallireducens gs-15
18c3lpmA_



99.8 23 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase small domain protein2 from listeria monocytogenes
19c2as0A_



99.8 25 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ph1915;
PDBTitle: crystal structure of ph1915 (apc 5817): a hypothetical rna2 methyltransferase
20d2fpoa1



99.8 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
21d1sqga2



not modelled 99.8 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:NOL1/NOP2/sun
22d1ws6a1



not modelled 99.8 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
23c3ku1E_



not modelled 99.8 23 PDB header:transferase
Chain: E: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of streptococcus pneumoniae sp1610, a2 putative trna (m1a22) methyltransferase, in complex with s-3 adenosyl-l-methionine
24d1o54a_



not modelled 99.8 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
25d2igta1



not modelled 99.8 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
26c3lecA_



not modelled 99.8 18 PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:nadb-rossmann superfamily protein;
PDBTitle: the crystal structure of a protein in the nadb-rossmann2 superfamily from streptococcus agalactiae to 1.8a
27d2fcaa1



not modelled 99.8 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
28c3eeyJ_



not modelled 99.8 19 PDB header:transferase
Chain: J: PDB Molecule:putative rrna methylase;
PDBTitle: crystal structure of putative rrna-methylase from clostridium2 thermocellum
29c3c0kB_



not modelled 99.8 22 PDB header:transferase
Chain: B: PDB Molecule:upf0064 protein yccw;
PDBTitle: crystal structure of a ribosomal rna methyltranferase
30c3egiA_



not modelled 99.8 26 PDB header:transferase
Chain: A: PDB Molecule:trimethylguanosine synthase homolog;
PDBTitle: methyltransferase domain of human trimethylguanosine2 synthase tgs1 bound to m7gpppa (inactive form)
31c1wxwA_



not modelled 99.8 27 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha1280;
PDBTitle: crystal structure of tt1595, a putative sam-dependent2 methyltransferase from thermus thermophillus hb8
32d2frna1



not modelled 99.8 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Met-10+ protein-like
33c3mb5A_



not modelled 99.8 17 PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of p. abyssi trna m1a58 methyltransferase in complex2 with s-adenosyl-l-methionine
34d1m6ya2



not modelled 99.8 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:MraW-like putative methyltransferases
35c2b78A_



not modelled 99.8 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein smu.776;
PDBTitle: a putative sam-dependent methyltransferase from2 streptococcus mutans
36c2esrB_



not modelled 99.8 23 PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: conserved hypothetical protein- streptococcus pyogenes
37c3lduA_



not modelled 99.8 19 PDB header:transferase
Chain: A: PDB Molecule:putative methylase;
PDBTitle: the crystal structure of a possible methylase from2 clostridium difficile 630.
38d1l3ia_



not modelled 99.8 28 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Precorrin-6Y methyltransferase (CbiT)
39c3gnlB_



not modelled 99.8 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein, duf633, lmof2365_1472;
PDBTitle: structure of uncharacterized protein (lmof2365_1472) from2 listeria monocytogenes serotype 4b
40d2fk8a1



not modelled 99.8 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
41c1yb2A_



not modelled 99.8 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0852;
PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum.
42d1yb2a1



not modelled 99.8 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
43d2b78a2



not modelled 99.8 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
44d1wxxa2



not modelled 99.8 28 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
45d2esra1



not modelled 99.8 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
46c3a26A_



not modelled 99.8 18 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein ph0793;
PDBTitle: crystal structure of p. horikoshii tyw2 in complex with2 mesado
47c3gdhC_



not modelled 99.8 22 PDB header:transferase
Chain: C: PDB Molecule:trimethylguanosine synthase homolog;
PDBTitle: methyltransferase domain of human trimethylguanosine2 synthase 1 (tgs1) bound to m7gtp and adenosyl-homocysteine3 (active form)
48c3p2kA_



not modelled 99.8 20 PDB header:transferase
Chain: A: PDB Molecule:16s rrna methylase;
PDBTitle: structure of an antibiotic related methyltransferase
49c3k0bA_



not modelled 99.8 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted n6-adenine-specific dna methylase;
PDBTitle: crystal structure of a predicted n6-adenine-specific dna methylase2 from listeria monocytogenes str. 4b f2365
50c2yxdA_



not modelled 99.8 16 PDB header:transferase
Chain: A: PDB Molecule:probable cobalt-precorrin-6y c(15)-methyltransferase
PDBTitle: crystal structure of cobalamin biosynthesis precorrin 8w decarboxylase2 (cbit)
51d1l1ea_



not modelled 99.8 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
52c2fk8A_



not modelled 99.8 15 PDB header:transferase
Chain: A: PDB Molecule:methoxy mycolic acid synthase 4;
PDBTitle: crystal structure of hma (mmaa4) from mycobacterium tuberculosis2 complexed with s-adenosylmethionine
53c2pwyB_



not modelled 99.8 22 PDB header:transferase
Chain: B: PDB Molecule:trna (adenine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of a m1a58 trna methyltransferase
54d1kpia_



not modelled 99.8 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
55d1nkva_



not modelled 99.8 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical Protein YjhP
56d1kpga_



not modelled 99.8 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
57d1xvaa_



not modelled 99.8 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
58c2yx1A_



not modelled 99.8 23 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein mj0883;
PDBTitle: crystal structure of m.jannaschii trna m1g37 methyltransferase
59c2pbfA_



not modelled 99.8 18 PDB header:transferase
Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase beta-aspartate
PDBTitle: crystal structure of a putative protein-l-isoaspartate o-2 methyltransferase beta-aspartate methyltransferase (pcmt) from3 plasmodium falciparum in complex with s-adenosyl-l-homocysteine
60c3ldgA_



not modelled 99.8 20 PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein smu.472;
PDBTitle: crystal structure of smu.472, a putative methyltransferase complexed2 with sah
61c3dxyA_



not modelled 99.8 15 PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of ectrmb in complex with sam
62c2gpyB_



not modelled 99.8 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of putative o-methyltransferase from bacillus2 halodurans
63d1r74a_



not modelled 99.8 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
64c3g5tA_



not modelled 99.8 17 PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 3-methyltransferase;
PDBTitle: crystal structure of trans-aconitate 3-methyltransferase2 from yeast
65c3m70A_



not modelled 99.8 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tellurite resistance protein tehb homolog;
PDBTitle: crystal structure of tehb from haemophilus influenzae
66d1tpya_



not modelled 99.8 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
67c3m33B_



not modelled 99.8 18 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a functionally unknown protein from2 deinococcus radiodurans r1
68c2yxlA_



not modelled 99.8 16 PDB header:transferase
Chain: A: PDB Molecule:450aa long hypothetical fmu protein;
PDBTitle: crystal structure of ph0851
69c3dlcA_



not modelled 99.8 21 PDB header:transferase
Chain: A: PDB Molecule:putative s-adenosyl-l-methionine-dependent
PDBTitle: crystal structure of a putative s-adenosyl-l-methionine-dependent2 methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 a3 resolution
70c3e7pA_



not modelled 99.8 20 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of of putative methyltransferase from bacteroides2 vulgatus atcc 8482
71d2b25a1



not modelled 99.8 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
72c3njrB_



not modelled 99.8 16 PDB header:transferase
Chain: B: PDB Molecule:precorrin-6y methylase;
PDBTitle: crystal structure of c-terminal domain of precorrin-6y c5,15-2 methyltransferase from rhodobacter capsulatus
73d2ifta1



not modelled 99.7 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
74c3mtiA_



not modelled 99.7 18 PDB header:transferase
Chain: A: PDB Molecule:rrna methylase;
PDBTitle: the crystal structure of a rrna methylase from streptococcus2 thermophilus to 1.95a
75d1zx0a1



not modelled 99.7 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
76c1z3cA_



not modelled 99.7 20 PDB header:transferase
Chain: A: PDB Molecule:mrna capping enzyme;
PDBTitle: encephalitozooan cuniculi mrna cap (guanine-n7)2 methyltransferasein complexed with azoadomet
77d1jsxa_



not modelled 99.7 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glucose-inhibited division protein B (GidB)
78d1wy7a1



not modelled 99.7 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ta1320-like
79d1ri5a_



not modelled 99.7 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:mRNA cap (Guanine N-7) methyltransferase
80c1sqgA_



not modelled 99.7 19 PDB header:transferase
Chain: A: PDB Molecule:sun protein;
PDBTitle: the crystal structure of the e. coli fmu apoenzyme at 1.652 a resolution
81c3f4kA_



not modelled 99.7 16 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of a probable methyltransferase from2 bacteroides thetaiotaomicron. northeast structural3 genomics target btr309.
82c3bgvC_



not modelled 99.7 19 PDB header:transferase
Chain: C: PDB Molecule:mrna cap guanine-n7 methyltransferase;
PDBTitle: crystal structure of mrna cap guanine-n7 methyltransferase2 in complex with sah
83c3lccA_



not modelled 99.7 23 PDB header:transferase
Chain: A: PDB Molecule:putative methyl chloride transferase;
PDBTitle: structure of a sam-dependent halide methyltransferase from arabidopsis2 thaliana
84c3lcvB_



not modelled 99.7 13 PDB header:transferase
Chain: B: PDB Molecule:sisomicin-gentamicin resistance methylase sgm;
PDBTitle: crystal structure of antibiotic related methyltransferase
85c2yxeB_



not modelled 99.7 24 PDB header:transferase
Chain: B: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: crystal structure of l-isoaspartyl protein carboxyl methyltranferase
86d1i1na_



not modelled 99.7 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
87d1uwva2



not modelled 99.7 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:(Uracil-5-)-methyltransferase
88d2o57a1



not modelled 99.7 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
89d2gh1a1



not modelled 99.7 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:BC2162-like
90c3bkxB_



not modelled 99.7 18 PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of cyclopropane-fatty-acyl-phospholipid synthase-2 like protein (yp_807781.1) from lactobacillus casei atcc 334 at 1.853 a resolution
91d1dl5a1



not modelled 99.7 25 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
92c2vduE_



not modelled 99.7 20 PDB header:transferase
Chain: E: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex
93d1o9ga_



not modelled 99.7 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA methyltransferase AviRa
94d1xcla_



not modelled 99.7 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
95d1xdza_



not modelled 99.7 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glucose-inhibited division protein B (GidB)
96c3g07C_



not modelled 99.7 19 PDB header:transferase
Chain: C: PDB Molecule:7sk snrna methylphosphate capping enzyme;
PDBTitle: methyltransferase domain of human bicoid-interacting protein2 3 homolog (drosophila)
97d1p1ca_



not modelled 99.7 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
98c1vl5B_



not modelled 99.7 22 PDB header:transferase
Chain: B: PDB Molecule:unknown conserved protein bh2331;
PDBTitle: crystal structure of a putative methyltransferase (bh2331) from2 bacillus halodurans c-125 at 1.95 a resolution
99c3mggB_



not modelled 99.7 21 PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of methyl transferase from methanosarcina2 mazei
100d1vl5a_



not modelled 99.7 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
101d1xxla_



not modelled 99.7 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
102c2yvlB_



not modelled 99.7 20 PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of trna (m1a58) methyltransferase trmi from aquifex2 aeolicus
103c3a27A_



not modelled 99.7 19 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein mj1557;
PDBTitle: crystal structure of m. jannaschii tyw2 in complex with2 adomet
104d1d2ha_



not modelled 99.7 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
105d1ixka_



not modelled 99.7 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:NOL1/NOP2/sun
106c3cbgA_



not modelled 99.7 18 PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase;
PDBTitle: functional and structural characterization of a2 cationdependent o-methyltransferase from the3 cyanobacterium synechocystis sp. strain pcc 6803
107d1r18a_



not modelled 99.7 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
108c2hnkC_



not modelled 99.7 21 PDB header:transferase
Chain: C: PDB Molecule:sam-dependent o-methyltransferase;
PDBTitle: crystal structure of sam-dependent o-methyltransferase from2 pathogenic bacterium leptospira interrogans
109d1i9ga_



not modelled 99.7 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
110c3ntvB_



not modelled 99.7 18 PDB header:transferase
Chain: B: PDB Molecule:mw1564 protein;
PDBTitle: crystal structure of a putative caffeoyl-coa o-methyltransferase from2 staphylococcus aureus
111c3lbfC_



not modelled 99.7 22 PDB header:transferase
Chain: C: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: crystal structure of protein l-isoaspartyl methyltransferase from2 escherichia coli
112c3hm2G_



not modelled 99.7 20 PDB header:transferase
Chain: G: PDB Molecule:precorrin-6y c5,15-methyltransferase;
PDBTitle: crystal structure of putative precorrin-6y c5,15-2 methyltransferase targeted domain from corynebacterium3 diphtheriae
113d2f8la1



not modelled 99.7 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N-6 DNA Methylase-like
114d2ex4a1



not modelled 99.7 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:AD-003 protein-like
115c3g8aF_



not modelled 99.7 20 PDB header:transferase
Chain: F: PDB Molecule:ribosomal rna small subunit methyltransferase g;
PDBTitle: t. thermophilus 16s rrna g527 methyltransferase in complex with adohcy2 in space group p61
116c2yr0A_



not modelled 99.7 19 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha0223;
PDBTitle: crystal structure of hypothetical methyltransferase ttha0223 from2 thermus thermophilus hb8
117c1uwvA_



not modelled 99.7 23 PDB header:transferase
Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma;
PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase
118c3mq2A_



not modelled 99.7 17 PDB header:transferase
Chain: A: PDB Molecule:16s rrna methyltransferase;
PDBTitle: crystal structure of 16s rrna methyltranferase kamb
119d1wg8a2



not modelled 99.7 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:MraW-like putative methyltransferases
120c3fpjA_



not modelled 99.7 19 PDB header:biosynthetic protein, transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of e81q mutant of mtnas in complex with s-2 adenosylmethionine

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0