Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	S	L	F	K	V	T	L	L	A	T	T	M	A	V	A	L	H	A	P	I	T	F	A	A	E	A	A	K	P	A	T	A	A	D	S	K	A	A	F	K	N	D	D	Q	K	S	A	Y	A	L	G	A	S	L	G	R	Y	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?															?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	N	S	L	K	E	Q	E	K	L	G	I	K	L	D	K	D	Q	L	I	A	G	V	Q	D	A	F	A	D	K	S	K	L	S	D	Q	E	I	E	Q	T	L	Q	A	F	E	A	R	V	K	S	S	A	Q	A	K	M	E	K	D
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?																?	?	?	?	?	?	?	?																								?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	A	D	N	E	A	K	G	K	E	Y	R	E	K	F	A	K	E	K	G	V	K	T	S	S	T	G	L	V	Y	Q	V	V	E	A	G	K	G	E	A	P	K	D	S	D	T	V	V	V	N	Y	K	G	T	L	I	D	G	K	E
Secondary structure
SS confidence
Disorder		?	?	?	?																																					?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	D	N	S	Y	T	R	G	E	P	L	S	F	R	L	D	G	V	I	P	G	W	T	E	G	L	K	N	I	K	K	G	G	K	I	K	L	V	I	P	P	E	L	A	Y	G	K	A	G	V	P	G	I	P	P	N	S	T	L	V
Secondary structure
SS confidence
Disorder																																																?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Sequence		F	D	V	E	L	L	D	V	K	P	A	P	K	A	D	A	K	P	E	A	D	A	K	A	A	D	S	A	K	K
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1q6h chain A Region: 40 - 249 Aligned: 210 Modelled: 210 Confidence: 100.0% Identity: 99% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1q6u chain A Region: 40 - 252 Aligned: 213 Modelled: 213 Confidence: 100.0% Identity: 100% PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase fkpa; PDBTitle: crystal structure of fkpa from escherichia coli Phyre2 PDB 1fd9 chain A Region: 43 - 251 Aligned: 202 Modelled: 209 Confidence: 100.0% Identity: 37% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2vcd chain A Region: 118 - 252 Aligned: 135 Modelled: 135 Confidence: 100.0% Identity: 41% PDB header:isomerase Chain: A: PDB Molecule:outer membrane protein mip; PDBTitle: solution structure of the fkbp-domain of legionella2 pneumophila mip in complex with rapamycin Phyre2 PDB 1jvw chain A Region: 115 - 267 Aligned: 153 Modelled: 153 Confidence: 100.0% Identity: 38% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 3oe2 chain A Region: 121 - 250 Aligned: 127 Modelled: 130 Confidence: 100.0% Identity: 38% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: 1.6 a crystal structure of peptidyl-prolyl cis-trans isomerase ppiase2 from pseudomonas syringae pv. tomato str. dc3000 (pspto dc3000) Phyre2 PDB 2lgo chain A Region: 136 - 248 Aligned: 113 Modelled: 113 Confidence: 100.0% Identity: 45% PDB header:isomerase Chain: A: PDB Molecule:fkbp; PDBTitle: solution nmr structure of a fkbp-type peptidyl-prolyl cis-trans2 isomerase from giardia lamblia, seattle structural genomics center3 for infectious disease target gilaa.00840.a Phyre2 PDB 1yat chain A Region: 142 - 248 Aligned: 107 Modelled: 107 Confidence: 100.0% Identity: 46% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2ke0 chain A Region: 138 - 248 Aligned: 111 Modelled: 111 Confidence: 100.0% Identity: 50% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of peptidyl-prolyl cis-trans isomerase from2 burkholderia pseudomallei Phyre2 PDB 1q1c chain A domain 1 Region: 143 - 250 Aligned: 108 Modelled: 108 Confidence: 100.0% Identity: 42% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2jwx chain A Region: 136 - 253 Aligned: 116 Modelled: 118 Confidence: 100.0% Identity: 20% PDB header:apoptosis, isomerase Chain: A: PDB Molecule:fk506-binding protein 8 variant; PDBTitle: solution structure of the n-terminal domain of human fkbp382 (fkbp38ntd) Phyre2 PDB 1c9h chain A Region: 147 - 249 Aligned: 103 Modelled: 103 Confidence: 100.0% Identity: 46% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1r9h chain A Region: 143 - 249 Aligned: 107 Modelled: 107 Confidence: 100.0% Identity: 39% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2f4e chain B Region: 138 - 250 Aligned: 113 Modelled: 113 Confidence: 100.0% Identity: 23% PDB header:signaling protein Chain: B: PDB Molecule:atfkbp42; PDBTitle: n-terminal domain of fkbp42 from arabidopsis thaliana Phyre2 PDB 3o5f chain A Region: 143 - 249 Aligned: 107 Modelled: 107 Confidence: 100.0% Identity: 47% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: fk1 domain of fkbp51, crystal form vii Phyre2 PDB 2vn1 chain A Region: 143 - 252 Aligned: 110 Modelled: 110 Confidence: 100.0% Identity: 35% PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 Phyre2 PDB 1rou chain A Region: 143 - 249 Aligned: 107 Modelled: 107 Confidence: 100.0% Identity: 43% PDB header:rotamase (isomerase) Chain: A: PDB Molecule:fkbp59-i; PDBTitle: structure of fkbp59-i, the n-terminal domain of a 59 kda2 fk506-binding protein, nmr, 22 structures Phyre2 PDB 2ppn chain A domain 1 Region: 147 - 249 Aligned: 103 Modelled: 103 Confidence: 100.0% Identity: 49% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1u79 chain A Region: 139 - 248 Aligned: 110 Modelled: 110 Confidence: 100.0% Identity: 45% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1kt0 chain A domain 3 Region: 143 - 251 Aligned: 108 Modelled: 109 Confidence: 100.0% Identity: 24% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 1 d1q6ha_ 2 c1q6uA_ 3 d1fd9a_ 4 c2vcdA_ 5 d1jvwa_ 6 c3oe2A_ 7 c2lgoA_ 8 d1yata_ 9 c2ke0A_ 10 d1q1ca1 11 c2jwxA_ 12 d1c9ha_ 13 d1r9ha_ 14 c2f4eB_ 15 c3o5fA_ 16 c2vn1A_ 17 c1rouA_ 18 d2ppna1 19 d1u79a_ 20 d1kt0a3 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1q6ha_ 100.0 99 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 2 c1q6uA_ 100.0 100 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase fkpa; PDBTitle: crystal structure of fkpa from escherichia coli 3 d1fd9a_ 100.0 37 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 4 c2vcdA_ 100.0 41 PDB header:isomerase Chain: A: PDB Molecule:outer membrane protein mip; PDBTitle: solution structure of the fkbp-domain of legionella2 pneumophila mip in complex with rapamycin 5 d1jvwa_ 100.0 38 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 6 c3oe2A_ 100.0 38 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: 1.6 a crystal structure of peptidyl-prolyl cis-trans isomerase ppiase2 from pseudomonas syringae pv. tomato str. dc3000 (pspto dc3000) 7 c2lgoA_ 100.0 45 PDB header:isomerase Chain: A: PDB Molecule:fkbp; PDBTitle: solution nmr structure of a fkbp-type peptidyl-prolyl cis-trans2 isomerase from giardia lamblia, seattle structural genomics center3 for infectious disease target gilaa.00840.a 8 d1yata_ 100.0 46 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 9 c2ke0A_ 100.0 50 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of peptidyl-prolyl cis-trans isomerase from2 burkholderia pseudomallei 10 d1q1ca1 100.0 42 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 11 c2jwxA_ 100.0 20 PDB header:apoptosis, isomerase Chain: A: PDB Molecule:fk506-binding protein 8 variant; PDBTitle: solution structure of the n-terminal domain of human fkbp382 (fkbp38ntd) 12 d1c9ha_ 100.0 46 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 13 d1r9ha_ 100.0 39 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 14 c2f4eB_ 100.0 23 PDB header:signaling protein Chain: B: PDB Molecule:atfkbp42; PDBTitle: n-terminal domain of fkbp42 from arabidopsis thaliana 15 c3o5fA_ 100.0 47 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: fk1 domain of fkbp51, crystal form vii 16 c2vn1A_ 100.0 35 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 17 c1rouA_ 100.0 43 PDB header:rotamase (isomerase) Chain: A: PDB Molecule:fkbp59-i; PDBTitle: structure of fkbp59-i, the n-terminal domain of a 59 kda2 fk506-binding protein, nmr, 22 structures 18 d2ppna1 100.0 49 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 19 d1u79a_ 100.0 45 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 20 d1kt0a3 100.0 24 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 21 d1kt1a3 not modelled 100.0 23 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 22 c3b7xA_ not modelled 100.0 29 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 6; PDBTitle: crystal structure of human fk506-binding protein 6 23 c3o5dB_ not modelled 100.0 46 PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: crystal structure of a fragment of fkbp51 comprising the fk1 and fk22 domains 24 c1q1cA_ not modelled 99.9 38 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 4; PDBTitle: crystal structure of n(1-260) of human fkbp52 25 c2d9fA_ not modelled 99.9 21 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 8 variant; PDBTitle: solution structure of ruh-047, an fkbp domain from human2 cdna 26 d1pbka_ not modelled 99.9 47 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 27 c2pbcD_ not modelled 99.9 46 PDB header:isomerase Chain: D: PDB Molecule:fk506-binding protein 2; PDBTitle: fk506-binding protein 2 28 d1q1ca2 not modelled 99.9 24 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 29 c3jxvA_ not modelled 99.9 31 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidyl-prolyl isomerase; PDBTitle: crystal structure of the 3 fkbp domains of wheat fkbp73 30 c2if4A_ not modelled 99.9 20 PDB header:signaling protein Chain: A: PDB Molecule:atfkbp42; PDBTitle: crystal structure of a multi-domain immunophilin from2 arabidopsis thaliana 31 d1kt0a2 not modelled 99.9 44 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 32 d1kt1a2 not modelled 99.9 41 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 33 c1qz2B_ not modelled 99.9 24 PDB header:isomerase/chaperone Chain: B: PDB Molecule:fk506-binding protein 4; PDBTitle: crystal structure of fkbp52 c-terminal domain complex with2 the c-terminal peptide meevd of hsp90 34 c1kt0A_ not modelled 99.9 24 PDB header:isomerase Chain: A: PDB Molecule:51 kda fk506-binding protein; PDBTitle: structure of the large fkbp-like protein, fkbp51, involved in steroid2 receptor complexes 35 c2kr7A_ not modelled 99.8 23 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 36 c2k8iA_ not modelled 99.7 26 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 37 c2kfwA_ not modelled 99.7 27 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 38 c3pr9A_ not modelled 99.7 31 PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 39 d1ix5a_ not modelled 99.7 36 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 40 c3prdA_ not modelled 99.7 36 PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 41 c3cgnA_ not modelled 99.6 35 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 42 c1hxvA_ not modelled 99.5 20 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: ppiase domain of the mycoplasma genitalium trigger factor 43 d1hxva_ not modelled 99.5 20 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 44 d1l1pa_ not modelled 99.4 23 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 45 d1w26a3 not modelled 99.3 22 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 46 d1t11a3 not modelled 99.3 21 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 47 c1w26B_ not modelled 98.6 20 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 48 c1t11A_ not modelled 98.4 20 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor 49 c3gtyX_ not modelled 97.6 19 PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone 50 c3htxA_ not modelled 96.4 13 PDB header:transferase/rna Chain: A: PDB Molecule:hen1; PDBTitle: crystal structure of small rna methyltransferase hen1 51 d1jnsa_ not modelled 46.7 12 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 52 c2a2bA_ not modelled 41.4 40 PDB header:antibiotic Chain: A: PDB Molecule:bacteriocin curvacin a; PDBTitle: curvacin a 53 d2diga1 not modelled 29.8 43 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 54 d1pina2 not modelled 29.2 10 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 55 d2pv2a1 not modelled 28.8 17 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 56 c2rqsA_ not modelled 28.8 12 PDB header:isomerase Chain: A: PDB Molecule:parvulin-like peptidyl-prolyl isomerase; PDBTitle: 3d structure of pin from the psychrophilic archeon cenarcheaum2 symbiosum (cspin) 57 d1j6ya_ not modelled 26.9 14 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 58 d1ueba1 not modelled 26.8 23 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 59 c3gpkA_ not modelled 23.3 14 PDB header:isomerase Chain: A: PDB Molecule:ppic-type peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of ppic-type peptidyl-prolyl cis-trans isomerase2 domain at 1.55a resolution. 60 c3a5zF_ not modelled 21.8 17 PDB header:ligase Chain: F: PDB Molecule:elongation factor p; PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p 61 d1o65a_ not modelled 20.3 23 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:MOSC (MOCO sulphurase C-terminal) domain 62 c2eqmA_ not modelled 20.1 9 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens] 63 c1yw5A_ not modelled 18.0 17 PDB header:isomerase Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase; PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans 64 d1m5ya3 not modelled 17.8 14 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 65 d1gpla1 not modelled 16.6 14 Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain) Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain) Family:Colipase-binding domain 66 d1orua_ not modelled 16.0 36 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:MOSC (MOCO sulphurase C-terminal) domain 67 d1fcda2 not modelled 15.1 20 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 68 c3qgaD_ not modelled 14.8 22 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 69 d2hd9a1 not modelled 14.7 22 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 70 c1zk6A_ not modelled 12.6 9 PDB header:isomerase Chain: A: PDB Molecule:foldase protein prsa; PDBTitle: nmr solution structure of b. subtilis prsa ppiase 71 d1ejxb_ not modelled 11.1 32 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 72 c3rfwA_ not modelled 11.0 16 PDB header:chaperone Chain: A: PDB Molecule:cell-binding factor 2; PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally-related sura-like chaperones in the human pathogen3 campylobacter jejuni 73 d2f8la1 not modelled 10.6 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:N-6 DNA Methylase-like 74 d2vj0a1 not modelled 10.6 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like 75 d2ih2a1 not modelled 9.8 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:DNA methylase TaqI, N-terminal domain 76 d4ubpb_ not modelled 9.8 28 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 77 d1e9ya1 not modelled 9.3 36 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 78 c3q1jA_ not modelled 8.6 15 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 1 of human phd finger protein 20 79 c2jzvA_ not modelled 7.5 17 PDB header:isomerase Chain: A: PDB Molecule:foldase protein prsa; PDBTitle: solution structure of s. aureus prsa-ppiase 80 d1etha1 not modelled 7.3 14 Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain) Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain) Family:Colipase-binding domain 81 c1f8aB_ not modelled 7.2 14 PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima- PDBTitle: structural basis for the phosphoserine-proline recognition2 by group iv ww domains 82 d1qfja1 not modelled 7.1 10 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 83 c3on1A_ not modelled 6.9 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2414 protein; PDBTitle: the structure of a protein with unknown function from bacillus2 halodurans c 84 d1eq3a_ not modelled 6.9 13 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 85 c1mv3A_ not modelled 6.6 28 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:myc box dependent interacting protein 1; PDBTitle: nmr structure of the tumor suppressor bin1: alternative2 splicing in melanoma and interaction with c-myc 86 c3ikmD_ not modelled 6.6 50 PDB header:transferase Chain: D: PDB Molecule:dna polymerase subunit gamma-1; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme 87 d2j44a1 not modelled 6.6 50 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:PUD-like 88 c3oyyA_ not modelled 6.4 14 PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of pseudomonas aeruginosa elongation factor p 89 c2p5dA_ not modelled 6.3 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0310 protein mjecl36; PDBTitle: crystal structure of mjecl36 from methanocaldococcus2 jannaschii dsm 2661 90 c2wdtA_ not modelled 6.2 20 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase l3; PDBTitle: crystal structure of plasmodium falciparum uchl3 in complex2 with the suicide inhibitor ubvme 91 d1js8a2 not modelled 6.2 27 Fold:C-terminal domain of mollusc hemocyanin Superfamily:C-terminal domain of mollusc hemocyanin Family:C-terminal domain of mollusc hemocyanin 92 d2qqra2 not modelled 6.2 18 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 93 d1p7ka1 not modelled 6.1 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 94 d1xd3a_ not modelled 6.0 20 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Ubiquitin carboxyl-terminal hydrolase UCH-L 95 d1v29a_ not modelled 5.9 17 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 96 d2qqsa2 not modelled 5.8 18 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 97 c1e9zA_ not modelled 5.8 36 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 98 c1m5yB_ not modelled 5.7 17 PDB header:isomerase, cell cycle Chain: B: PDB Molecule:survival protein sura; PDBTitle: crystallographic structure of sura, a molecular chaperone2 that facilitates outer membrane porin folding 99 c3n42F_ not modelled 5.5 29 PDB header:viral protein Chain: F: PDB Molecule:e1 envelope glycoprotein; PDBTitle: crystal structures of the mature envelope glycoprotein complex (furin2 cleavage) of chikungunya virus.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0