PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1m5yB_

Fold library id	PDB Header	Molecule	Title
c1m5yB_	PDB header: isomerase, cell cycle	Chain: B: PDB Molecule: survival protein sura;	PDBTitle: crystallographic structure of sura, a molecular chaperone2 that facilitates outer membrane porin folding

Links to external resources
Added to library: Tue Mar 16 13:10:01 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V D K V A A V V N N G V V L E S D V D G L M Q S V K L N A A Q A R Q Q L P D D A T L R H Q I M E R L I M D Q I I L Q M G Q K M G V K I S D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q L D Q A I A N I A K Q N N M T L D Q M R S R L A Y D G L N Y N T Y R N Q I R K E M I I S E V R N N E V R R R I T I L P Q E V E S L A Q Q T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E L N L S H I L I P L P E N P T S D Q V N E A E S Q A R A I V D Q A R N G A D F G K L A I A H S A D Q Q A L N G G Q M G W G R I Q E L P G I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S T T G G G T T
G G G S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence F A Q A L S T A K K G D I V G P I R S G V G F H I L K V N D L R T E V H A R H I L L K P S P I M T D E Q A R V K L E Q I A A D I K S G K T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
T T
T T
B T T B
T T S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence F A A A A K E F S Q D P G S A N Q G G D L G W A T P D I F D P A F R D A L T R L N K G Q M S A P V H S S F G W H L I E L L D T R N R A Y R M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T T T
G G G S
T T
B
T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . .

Sequence L M N R K F S E E A A S W M Q E Q R A S A Y V K I L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	D	K	V	A	A	V	V	N	N	G	V	V	L	E	S	D	V	D	G	L	M	Q	S	V	K	L	N	A	A	Q	A	R	Q	Q	L	P	D	D	A	T	L	R	H	Q	I	M	E	R	L	I	M	D	Q	I	I	L	Q	M	G	Q	K	M	G	V	K	I	S	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S	S																				T	T	T																														T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	L	D	Q	A	I	A	N	I	A	K	Q	N	N	M	T	L	D	Q	M	R	S	R	L	A	Y	D	G	L	N	Y	N	T	Y	R	N	Q	I	R	K	E	M	I	I	S	E	V	R	N	N	E	V	R	R	R	I	T	I	L	P	Q	E	V	E	S	L	A	Q	Q	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T														T																										T	T					T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	L	N	L	S	H	I	L	I	P	L	P	E	N	P	T	S	D	Q	V	N	E	A	E	S	Q	A	R	A	I	V	D	Q	A	R	N	G	A	D	F	G	K	L	A	I	A	H	S	A	D	Q	Q	A	L	N	G	G	Q	M	G	W	G	R	I	Q	E	L	P	G	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	S																						T	T													S	T	T	G	G	G	T	T							G	G	G	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	F	A	Q	A	L	S	T	A	K	K	G	D	I	V	G	P	I	R	S	G	V	G	F	H	I	L	K	V	N	D	L	R	T	E	V	H	A	R	H	I	L	L	K	P	S	P	I	M	T	D	E	Q	A	R	V	K	L	E	Q	I	A	A	D	I	K	S	G	K	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T	T	T			T	T									T	T																								B	T	T	B																		T	T	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	F	A	A	A	A	K	E	F	S	Q	D	P	G	S	A	N	Q	G	G	D	L	G	W	A	T	P	D	I	F	D	P	A	F	R	D	A	L	T	R	L	N	K	G	Q	M	S	A	P	V	H	S	S	F	G	W	H	L	I	E	L	L	D	T	R	N	R	A	Y	R	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T	T	T	T	T	T							G	G	G	S													T	T		B							T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Sequence	L	M	N	R	K	F	S	E	E	A	A	S	W	M	Q	E	Q	R	A	S	A	Y	V	K	I	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	S