PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1q6uA_

Fold library id	PDB Header	Molecule	Title
c1q6uA_	PDB header: isomerase	Chain: A: PDB Molecule: fkbp-type peptidyl-prolyl cis-trans isomerase	PDBTitle: crystal structure of fkpa from escherichia coli

Links to external resources
Added to library: Tue Mar 16 13:00:05 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A F K N D D Q K S A Y A L G A S L G R Y M E N S L K E Q E K L G I K L D K D Q L I A G V Q D A F A D K S K L S D Q E I E Q T L Q A F E A R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T
T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K S S A Q A K M E K D A A D N E A K G K E Y R E K F A K E K G V K T S S T G L V Y Q V V E A G K G E A P K D S D T V V V N Y K G T L I D G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T
T T S
S S
T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E F D N S Y T R G E P L S F R L D G V I P G W T E G L K N I K K G G K I K L V I P P E L A Y G K A G V P G I P P N S T L V F D V E L L D V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G T S
T T T S
T T S
T T
G G G T T T T T
B T T B
T T

. . .

Sequence P A P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	F	K	N	D	D	Q	K	S	A	Y	A	L	G	A	S	L	G	R	Y	M	E	N	S	L	K	E	Q	E	K	L	G	I	K	L	D	K	D	Q	L	I	A	G	V	Q	D	A	F	A	D	K	S	K	L	S	D	Q	E	I	E	Q	T	L	Q	A	F	E	A	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S																										T	T	T																	T	T			S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	S	S	A	Q	A	K	M	E	K	D	A	A	D	N	E	A	K	G	K	E	Y	R	E	K	F	A	K	E	K	G	V	K	T	S	S	T	G	L	V	Y	Q	V	V	E	A	G	K	G	E	A	P	K	D	S	D	T	V	V	V	N	Y	K	G	T	L	I	D	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																												T	S	T	T					T	T	S										S	S					T	T												T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	F	D	N	S	Y	T	R	G	E	P	L	S	F	R	L	D	G	V	I	P	G	W	T	E	G	L	K	N	I	K	K	G	G	K	I	K	L	V	I	P	P	E	L	A	Y	G	K	A	G	V	P	G	I	P	P	N	S	T	L	V	F	D	V	E	L	L	D	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					G	G	G	G	T	S						T	T	T	S									T	T	S		T	T									G	G	G	T	T	T	T	T		B	T	T	B		T	T
	.	.	.
Sequence	P	A	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)