Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A7A7
DateThu Jan 5 11:05:13 GMT 2012
Unique Job ID9c74607744eb9073

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1iuqa_
Top template information
Fold:Glycerol-3-phosphate (1)-acyltransferase
Superfamily:Glycerol-3-phosphate (1)-acyltransferase
Family:Glycerol-3-phosphate (1)-acyltransferase
Confidence and coverage
Confidence: 97.5% Coverage: 31%
252 residues ( 31% of your sequence) have been modelled with 97.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSGWPRIYYKLLNLPLSILVKSKSIPADPAPELGLDTSRPIMYVLPYNSKADLLTLRAQC
Secondary structure 
SS confidence 
Disorder  ???
??
?
???
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LAHDLPDPLEPLEIDGTLLPRYVFIHGGPRVFTYYTPKEESIKLFHDYLDLHRSNPNLDV
Secondary structure 
SS confidence 
Disorder 
???
????????????????
??
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  QMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVLWLGRDSFVRFSPSVSLRRMADEH
Secondary structure 
SS confidence 
Disorder 
??????????????
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  GTDKTIAQKLARVARMHFARQRLAAVGPRLPARQDLFNKLLASRAIAKAVEDEARSKKIS
Secondary structure 
SS confidence 
Disorder  ???
?
????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  HEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWNRLYQGINVHNAERVRQLAHDGHEL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  VYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGINLNFWPAGPIFRRLGAFFIRRTFKGNK
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  LYSTVFREYLGELFSRGYSVEYFVEGGRSRTGRLLDPKTGTLSMTIQAMLRGGTRPITLI
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  PIYIGYEHVMEVGTYAKELRGATKEKESLPQMLRGLSKLRNLGQGYVNFGEPMPLMTYLN
Secondary structure 
SS confidence 
Disorder 
??
?
?
?
??
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  QHVPDWRESIDPIEAVRPAWLTPTVNNIAADLMVRINNAGAANAMNLCCTALLASRQRSL
Secondary structure 
SS confidence 
Disorder  ???????????????????
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  TREQLTEQLNCYLDLMRNVPYSTDSTVPSASASELIDHALQMNKFEVEKDTIGDIIILPR
Secondary structure 
SS confidence 
Disorder 
?
??
??
?
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  EQAVLMTYYRNNIAHMLVLPSLMAAIVTQHRHISRDVLMEHVNVLYPMLKAELFLRWDRD
Secondary structure 
SS confidence 
Disorder  ?
???
?
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  ELPDVIDALANEMQRQGLITLQDDELHINPAHSRTLQLLAAGARETLQRYAITFWLLSAN
Secondary structure 
SS confidence 
Disorder 
??
???
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  PSINRGTLEKESRTVAQRLSVLHGINAPEFFDKAVFSSLVLTLRDEGYISDSGDAEPAET
Secondary structure 
SS confidence 
Disorder  ????
?
??
????????
Disorder confidence 
 
   .........790.........800.......
Sequence  MKVYQLLAELITSDVRLTIESATQGEG
Secondary structure 
SS confidence 
Disorder 
?
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1iuq chain A

3D model

Region: 224 - 516
Aligned: 252
Modelled: 253
Confidence: 97.5%
Identity: 16%
Fold: Glycerol-3-phosphate (1)-acyltransferase
Superfamily: Glycerol-3-phosphate (1)-acyltransferase
Family: Glycerol-3-phosphate (1)-acyltransferase

Phyre2

PDB 2a07 chain F domain 1

3D model

Region: 521 - 600
Aligned: 71
Modelled: 80
Confidence: 31.6%
Identity: 15%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Forkhead DNA-binding domain

Phyre2

PDB 3hqd chain B

3D model

Region: 359 - 435
Aligned: 75
Modelled: 77
Confidence: 29.7%
Identity: 20%
PDB header:motor protein
Chain: B: PDB Molecule:kinesin-like protein kif11;
PDBTitle: human kinesin eg5 motor domain in complex with amppnp and2 mg2+

Phyre2

PDB 2jlh chain A

3D model

Region: 228 - 277
Aligned: 50
Modelled: 50
Confidence: 28.3%
Identity: 18%
PDB header:protein transport
Chain: A: PDB Molecule:yop proteins translocation protein u;
PDBTitle: crystal structure of the cytoplasmic domain of yersinia2 pestis yscu n263a mutant

Phyre2

PDB 2dpw chain A domain 1

3D model

Region: 385 - 420
Aligned: 36
Modelled: 36
Confidence: 28.0%
Identity: 25%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: TTHA0179-like

Phyre2

PDB 3tev chain A

3D model

Region: 330 - 392
Aligned: 63
Modelled: 63
Confidence: 26.7%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hyrolase, family 3;
PDBTitle: the crystal structure of glycosyl hydrolase from deinococcus2 radiodurans r1

Phyre2

PDB 1tr9 chain A

3D model

Region: 330 - 392
Aligned: 62
Modelled: 63
Confidence: 25.8%
Identity: 18%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: NagZ-like

Phyre2

PDB 2p6r chain A domain 1

3D model

Region: 642 - 684
Aligned: 43
Modelled: 43
Confidence: 25.3%
Identity: 9%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: RecQ helicase DNA-binding domain-like

Phyre2

PDB 1t3l chain A domain 2

3D model

Region: 690 - 714
Aligned: 25
Modelled: 25
Confidence: 21.7%
Identity: 12%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2

PDB 1e17 chain A

3D model

Region: 517 - 601
Aligned: 80
Modelled: 85
Confidence: 20.8%
Identity: 19%
PDB header:dna binding domain
Chain: A: PDB Molecule:afx;
PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4)

Phyre2

PDB 3s2w chain B

3D model

Region: 711 - 805
Aligned: 78
Modelled: 78
Confidence: 19.7%
Identity: 18%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1

Phyre2

PDB 1vyv chain A domain 2

3D model

Region: 690 - 714
Aligned: 25
Modelled: 25
Confidence: 18.7%
Identity: 16%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2

PDB 1t0h chain B

3D model

Region: 690 - 714
Aligned: 25
Modelled: 25
Confidence: 18.3%
Identity: 12%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2

PDB 1vyu chain A domain 2

3D model

Region: 690 - 714
Aligned: 25
Modelled: 25
Confidence: 17.4%
Identity: 16%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2

PDB 1ry6 chain A

3D model

Region: 359 - 435
Aligned: 76
Modelled: 77
Confidence: 16.9%
Identity: 14%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Motor proteins

Phyre2

PDB 1ry6 chain A

3D model

Region: 359 - 435
Aligned: 76
Modelled: 77
Confidence: 16.9%
Identity: 14%
PDB header:transport protein
Chain: A: PDB Molecule:internal kinesin;
PDBTitle: crystal structure of internal kinesin motor domain

Phyre2

PDB 1wj5 chain A

3D model

Region: 754 - 769
Aligned: 16
Modelled: 16
Confidence: 16.3%
Identity: 25%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: An Obfc1 domain

Phyre2

PDB 1z6r chain A domain 1

3D model

Region: 712 - 773
Aligned: 45
Modelled: 45
Confidence: 16.1%
Identity: 18%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: ROK associated domain

Phyre2

PDB 2c6y chain A domain 1

3D model

Region: 521 - 550
Aligned: 30
Modelled: 30
Confidence: 15.9%
Identity: 13%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Forkhead DNA-binding domain

Phyre2

PDB 1mvo chain A

3D model

Region: 265 - 365
Aligned: 101
Modelled: 101
Confidence: 15.5%
Identity: 14%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2
1
d1iuqa_
2
d2a07f1
3
c3hqdB_
4
c2jlhA_
5
d2dpwa1
6
c3tevA_
7
d1tr9a_
8
d2p6ra1
9
d1t3la2
10
c1e17A_
11
c3s2wB_
12
d1vyva2
13
d1t0hb_
14
d1vyua2
15
d1ry6a_
16
c1ry6A_
17
d1wj5a_
18
d1z6ra1
19
d2c6ya1
20
d1mvoa_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
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46
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48
49
50
51
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53
54
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63
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65
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67
68
69
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71
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73
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1iuqa_
97.5 16 Fold:Glycerol-3-phosphate (1)-acyltransferase
Superfamily:Glycerol-3-phosphate (1)-acyltransferase
Family:Glycerol-3-phosphate (1)-acyltransferase
2d2a07f1
31.6 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
3c3hqdB_
29.7 20 PDB header:motor protein
Chain: B: PDB Molecule:kinesin-like protein kif11;
PDBTitle: human kinesin eg5 motor domain in complex with amppnp and2 mg2+
4c2jlhA_
28.3 18 PDB header:protein transport
Chain: A: PDB Molecule:yop proteins translocation protein u;
PDBTitle: crystal structure of the cytoplasmic domain of yersinia2 pestis yscu n263a mutant
5d2dpwa1
28.0 25 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:TTHA0179-like
6c3tevA_
26.7 22 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hyrolase, family 3;
PDBTitle: the crystal structure of glycosyl hydrolase from deinococcus2 radiodurans r1
7d1tr9a_
25.8 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:NagZ-like
8d2p6ra1
25.3 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RecQ helicase DNA-binding domain-like
9d1t3la2
21.7 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
10c1e17A_
20.8 19 PDB header:dna binding domain
Chain: A: PDB Molecule:afx;
PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4)
11c3s2wB_
19.7 18 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1
12d1vyva2
18.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
13d1t0hb_
18.3 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
14d1vyua2
17.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
15d1ry6a_
16.9 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Motor proteins
16c1ry6A_
16.9 14 PDB header:transport protein
Chain: A: PDB Molecule:internal kinesin;
PDBTitle: crystal structure of internal kinesin motor domain
17d1wj5a_
16.3 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:An Obfc1 domain
18d1z6ra1
16.1 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
19d2c6ya1
15.9 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
20d1mvoa_
15.5 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
21c1sfeA_
not modelled 15.2 57 PDB header:dna-binding protein
Chain: A: PDB Molecule:ada o6-methylguanine-dna methyltransferase;
PDBTitle: ada o6-methylguanine-dna methyltransferase from escherichia coli
22c2jk1A_
not modelled 14.7 7 PDB header:dna-binding
Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1;
PDBTitle: crystal structure of the wild-type hupr receiver domain
23c3t6aB_
not modelled 14.5 15 PDB header:signaling protein
Chain: B: PDB Molecule:breast cancer anti-estrogen resistance protein 3;
PDBTitle: structure of the c-terminal domain of bcar3
24c3c00B_
not modelled 14.4 11 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:escu;
PDBTitle: crystal structural of the mutated g247t escu/spas c-terminal domain
25c2k29A_
not modelled 14.1 13 PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
26c2wbeC_
not modelled 14.0 17 PDB header:structural protein
Chain: C: PDB Molecule:bipolar kinesin krp-130;
PDBTitle: kinesin-5-tubulin complex with amppnp
27d1x88a1
not modelled 13.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Motor proteins
28c3lk6A_
not modelled 13.2 25 PDB header:hydrolase
Chain: A: PDB Molecule:lipoprotein ybbd;
PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis
29d2qzga1
not modelled 13.0 12 Fold:Bromodomain-like
Superfamily:Ta0600-like
Family:Ta0600-like
30c1wrjA_
not modelled 12.9 57 PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: crystal structure of o6-methylguanine methyltransferase2 from sulfolobus tokodaii
31c3g73A_
not modelled 12.5 11 PDB header:transcription/dna
Chain: A: PDB Molecule:forkhead box protein m1;
PDBTitle: structure of the foxm1 dna binding
32c3sqlB_
not modelled 12.2 17 PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 3;
PDBTitle: crystal structure of glycoside hydrolase from synechococcus
33d1q42a_
not modelled 12.2 39 Fold:Cystatin-like
Superfamily:NTF2-like
Family:NTF2-like
34c2vt1B_
not modelled 12.1 17 PDB header:membrane protein
Chain: B: PDB Molecule:surface presentation of antigens protein spas;
PDBTitle: crystal structure of the cytoplasmic domain of spa40, the2 specificity switch for the shigella flexneri type iii3 secretion system
35c2ctuA_
not modelled 11.9 50 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 483;
PDBTitle: solution structure of zinc finger domain from human zn2 finger protein 483
36c2byvE_
not modelled 11.3 13 PDB header:regulation
Chain: E: PDB Molecule:rap guanine nucleotide exchange factor 4;
PDBTitle: structure of the camp responsive exchange factor epac2 in2 its auto-inhibited state
37d2cqna1
not modelled 11.3 27 Fold:Another 3-helical bundle
Superfamily:FF domain
Family:FF domain
38c1t39A_
not modelled 11.0 57 PDB header:transferase/dna
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: human o6-alkylguanine-dna alkyltransferase covalently2 crosslinked to dna
39d1lj5a_
not modelled 10.8 9 Fold:Serpins
Superfamily:Serpins
Family:Serpins
40c3nwrA_
not modelled 10.7 16 PDB header:lyase
Chain: A: PDB Molecule:a rubisco-like protein;
PDBTitle: crystal structure of a rubisco-like protein from burkholderia fungorum
41c3i71B_
not modelled 10.1 28 PDB header:unknown function
Chain: B: PDB Molecule:ethanolamine utilization protein eutk;
PDBTitle: ethanolamine utilization microcompartment shell subunit, eutk c-2 terminal domain
42c3r4kD_
not modelled 10.1 16 PDB header:dna binding protein
Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution
43c2ijeS_
not modelled 10.1 18 PDB header:signaling protein
Chain: S: PDB Molecule:guanine nucleotide-releasing protein;
PDBTitle: crystal structure of the cdc25 domain of rasgrf1
44c2fyuE_
not modelled 10.1 64 PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
45c3bmxB_
not modelled 9.9 25 PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized lipoprotein ybbd;
PDBTitle: beta-n-hexosaminidase (ybbd) from bacillus subtilis
46c3ndaA_
not modelled 9.9 16 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:serpin-2;
PDBTitle: crystal structure of serpin from tick ixodes ricinus
47d1whna_
not modelled 9.8 18 Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
48c3co7C_
not modelled 9.6 16 PDB header:transcription/dna
Chain: C: PDB Molecule:forkhead box protein o1;
PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna
49d1seka_
not modelled 9.5 14 Fold:Serpins
Superfamily:Serpins
Family:Serpins
50d1dqna_
not modelled 9.4 14 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
51c3ozqA_
not modelled 9.2 16 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:serpin48;
PDBTitle: crystal structure of serpin48, which is a highly specific serpin in2 the insect tenebrio molitor
52c1p84E_
not modelled 8.9 50 PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
53d2qsba1
not modelled 8.8 17 Fold:Bromodomain-like
Superfamily:Ta0600-like
Family:Ta0600-like
54d2hfha_
not modelled 8.7 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
55d1ykwa1
not modelled 8.7 14 Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
56c3c01H_
not modelled 8.5 20 PDB header:membrane protein, protein transport
Chain: H: PDB Molecule:surface presentation of antigens protein spas;
PDBTitle: crystal structural of native spas c-terminal domain
57c3psfA_
not modelled 8.0 19 PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt6;
PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259)
58c2l25A_
not modelled 7.9 27 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: np_888769.1
59d8ruca1
not modelled 7.8 12 Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
60d1kcfa2
not modelled 7.7 15 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Mitochondrial resolvase ydc2 catalytic domain
61d1jm6a1
not modelled 7.7 19 Fold:Bromodomain-like
Superfamily:alpha-ketoacid dehydrogenase kinase, N-terminal domain
Family:alpha-ketoacid dehydrogenase kinase, N-terminal domain
62c2h4qA_
not modelled 7.5 15 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:heterochromatin-associated protein ment;
PDBTitle: crystal structure of a m-loop deletion variant of ment in2 the cleaved conformation
63c3kcnA_
not modelled 7.4 5 PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase homolog;
PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica
64c1mgtA_
not modelled 7.4 71 PDB header:transferase
Chain: A: PDB Molecule:protein (o6-methylguanine-dna methyltransferase);
PDBTitle: crystal structure of o6-methylguanine-dna methyltransferase from2 hyperthermophilic archaeon pyrococcus kodakaraensis strain kod1
65c3t7yB_
not modelled 7.3 17 PDB header:protein transport
Chain: B: PDB Molecule:yop proteins translocation protein u;
PDBTitle: structure of an autocleavage-inactive mutant of the cytoplasmic domain2 of ct091, the yscu homologue of chlamydia trachomatis
66c2kk6A_
not modelled 7.3 22 PDB header:transferase
Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase fer;
PDBTitle: solution structure of sh2 domain of proto-oncogene tyrosine-2 protein kinase fer from homo sapiens, northeast structural3 genomics consortium (nesg) target hr3461d
67c3igzB_
not modelled 7.3 22 PDB header:isomerase
Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase;
PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration
68d1ej7l1
not modelled 7.3 13 Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
69d1svda1
not modelled 7.2 18 Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
70c2vh4B_
not modelled 7.2 13 PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:tengpin;
PDBTitle: structure of a loop c-sheet serpin polymer
71d1d7ka2
not modelled 7.2 24 Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
72d3bzra1
not modelled 7.1 12 Fold:EscU C-terminal domain-like
Superfamily:EscU C-terminal domain-like
Family:EscU C-terminal domain-like
73c3bzrA_
not modelled 7.1 12 PDB header:membrane protein, protein transport
Chain: A: PDB Molecule:escu;
PDBTitle: crystal structure of escu c-terminal domain with n262d mutation, space2 group p 41 21 2
74c2fynO_
not modelled 7.1 50 PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
75d3bpya1
not modelled 7.1 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
76d1k9oi_
not modelled 7.0 14 Fold:Serpins
Superfamily:Serpins
Family:Serpins
77c1hleA_
not modelled 6.9 17 PDB header:hydrolase inhibitor(serine proteinase)
Chain: A: PDB Molecule:horse leukocyte elastase inhibitor;
PDBTitle: crystal structure of cleaved equine leucocyte elastase2 inhibitor determined at 1.95 angstroms resolution
78c2imgA_
not modelled 6.9 33 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 23;
PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion
79d1kq8a_
not modelled 6.6 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
80c1kq8A_
not modelled 6.6 27 PDB header:transcription
Chain: A: PDB Molecule:hepatocyte nuclear factor 3 forkhead homolog 1;
PDBTitle: solution structure of winged helix protein hfh-1
81c2hxhC_
not modelled 6.5 19 PDB header:transport protein
Chain: C: PDB Molecule:kinesin-like protein kif1a;
PDBTitle: kif1a head-microtubule complex structure in adp-form
82c3euhB_
not modelled 6.5 18 PDB header:cell cycle
Chain: B: PDB Molecule:chromosome partition protein mukf;
PDBTitle: crystal structure of the muke-mukf complex
83c1sngA_
not modelled 6.4 22 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:cog4826: serine protease inhibitor;
PDBTitle: structure of a thermophilic serpin in the native state
84d1imva_
not modelled 6.3 19 Fold:Serpins
Superfamily:Serpins
Family:Serpins
85d2doea1
not modelled 6.2 14 Fold:Another 3-helical bundle
Superfamily:FF domain
Family:FF domain
86d2qlvb1
not modelled 6.0 36 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:AMPK-beta glycogen binding domain-like
87c3rgqA_
not modelled 6.0 22 PDB header:hydrolase
Chain: A: PDB Molecule:protein-tyrosine phosphatase mitochondrial 1;
PDBTitle: crystal structure of ptpmt1 in complex with pi(5)p
88d1x38a1
not modelled 5.9 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:NagZ-like
89d1riea_
not modelled 5.9 64 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
90c3qfwB_
not modelled 5.8 20 PDB header:lyase
Chain: B: PDB Molecule:ribulose-1,5-bisphosphate carboxylase/oxygenase large
PDBTitle: crystal structure of rubisco-like protein from rhodopseudomonas2 palustris
91c1t5cA_
not modelled 5.7 12 PDB header:contractile protein
Chain: A: PDB Molecule:centromeric protein e;
PDBTitle: crystal structure of the motor domain of human kinetochore2 protein cenp-e
92d2z15a1
not modelled 5.7 10 Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
93c3fcnA_
not modelled 5.7 18 PDB header:unknown function
Chain: A: PDB Molecule:an alpha-helical protein of unknown function (pfam01724);
PDBTitle: crystal structure of an alpha-helical protein of unknown function2 (rru_a3208) from rhodospirillum rubrum atcc 11170 at 1.45 a3 resolution
94d3e9va1
not modelled 5.6 14 Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
95d1sfea1
not modelled 5.6 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
96c2k7rA_
not modelled 5.5 11 PDB header:replication
Chain: A: PDB Molecule:primosomal protein dnai;
PDBTitle: n-terminal domain of the bacillus subtilis helicase-loading2 protein dnai
97c2ia2D_
not modelled 5.5 12 PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1
98c2nvgA_
not modelled 5.4 45 PDB header:oxidoreductase
Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: soluble domain of rieske iron sulfur protein.
99d2bsqe1
not modelled 5.4 29 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0