PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ndaA_

Fold library id	PDB Header	Molecule	Title
c3ndaA_	PDB header: hydrolase inhibitor	Chain: A: PDB Molecule: serpin-2;	PDBTitle: crystal structure of serpin from tick ixodes ricinus

Links to external resources
Added to library: Sat Oct 30 10:34:18 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M Q E E A K L T K A N N R F G L R L L R A L P S G P E K N V F F S P Y S V S T A M G M A F A G A R G Q T Q Q E L S Q G L G F S D V D L T D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B T T B
T T
T T T G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G V L D A Y T H H T E R L K S T P S N S T L D V A N A A A I Q R T L A L L N S Y E S A L Q S S F G A E L H K V D F A G E P Q A A V D F V N N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence W V K R K T H D K I E K L F N E P L D P D T L L V L L N A I Y F K G E W N T A F V K E H T E K R Q F F N G G V T P V E V D T M R L E A R I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
S
S S
T T
B S S
G G G
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Y R F F D D L Q V E V V E L P Y R G L D Y T M A I L L P K E N T G V E G L K Q N L T I D R F Q N Y L S D L R E R K I T V L L P K F K L E T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T B T T S S S S T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence Y S L K A P L Q S L G I K Q I F E S G A D L S G I N D G S L R V S A V E H K A V V E V N E E G T V A A A T T G V V I V P Y P E P V V F R V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G S T T
S S
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . .

Sequence H P F L F F I R N T R T D D I F F V G Q V N K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	Q	E	E	A	K	L	T	K	A	N	N	R	F	G	L	R	L	L	R	A	L	P	S	G	P	E	K	N	V	F	F	S	P	Y	S	V	S	T	A	M	G	M	A	F	A	G	A	R	G	Q	T	Q	Q	E	L	S	Q	G	L	G	F	S	D	V	D	L	T	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						S			B	T	T	B																		T	T													T	T	T	G	G	G	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	V	L	D	A	Y	T	H	H	T	E	R	L	K	S	T	P	S	N	S	T	L	D	V	A	N	A	A	A	I	Q	R	T	L	A	L	L	N	S	Y	E	S	A	L	Q	S	S	F	G	A	E	L	H	K	V	D	F	A	G	E	P	Q	A	A	V	D	F	V	N	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S	S												T	T																								T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	W	V	K	R	K	T	H	D	K	I	E	K	L	F	N	E	P	L	D	P	D	T	L	L	V	L	L	N	A	I	Y	F	K	G	E	W	N	T	A	F	V	K	E	H	T	E	K	R	Q	F	F	N	G	G	V	T	P	V	E	V	D	T	M	R	L	E	A	R	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T	S				S		S	S				T	T															B	S	S				G	G	G									T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Y	R	F	F	D	D	L	Q	V	E	V	V	E	L	P	Y	R	G	L	D	Y	T	M	A	I	L	L	P	K	E	N	T	G	V	E	G	L	K	Q	N	L	T	I	D	R	F	Q	N	Y	L	S	D	L	R	E	R	K	I	T	V	L	L	P	K	F	K	L	E	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	T								B	T	T	S	S									S	S	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	Y	S	L	K	A	P	L	Q	S	L	G	I	K	Q	I	F	E	S	G	A	D	L	S	G	I	N	D	G	S	L	R	V	S	A	V	E	H	K	A	V	V	E	V	N	E	E	G	T	V	A	A	A	T	T	G	V	V	I	V	P	Y	P	E	P	V	V	F	R	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T			G	G	G	S	T	T								S	S																	S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Sequence	H	P	F	L	F	F	I	R	N	T	R	T	D	D	I	F	F	V	G	Q	V	N	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S									T	T	T