15/01/2012 18:00:10 : INFO  : Run start: Sun Jan 15 18:00:10 GMT 2012
15/01/2012 18:00:12 : INFO  : Initialised job
15/01/2012 18:00:13 : INFO  : Renaming log file 'phyre2_20120115_180010.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/9c74607744eb9073/phyre_20120115_180010.log'
15/01/2012 18:00:13 : INFO  : Initialised job:
Sequence
>batch____
MSGWPRIYYKLLNLPLSILVKSKSIPADPAPELGLDTSRPIMYVLPYNSKADLLTLRAQC
LAHDLPDPLEPLEIDGTLLPRYVFIHGGPRVFTYYTPKEESIKLFHDYLDLHRSNPNLDV
QMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVLWLGRDSFVRFSPSVSLRRMADEH
GTDKTIAQKLARVARMHFARQRLAAVGPRLPARQDLFNKLLASRAIAKAVEDEARSKKIS
HEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWNRLYQGINVHNAERVRQLAHDGHEL
VYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGINLNFWPAGPIFRRLGAFFIRRTFKGNK
LYSTVFREYLGELFSRGYSVEYFVEGGRSRTGRLLDPKTGTLSMTIQAMLRGGTRPITLI
PIYIGYEHVMEVGTYAKELRGATKEKESLPQMLRGLSKLRNLGQGYVNFGEPMPLMTYLN
QHVPDWRESIDPIEAVRPAWLTPTVNNIAADLMVRINNAGAANAMNLCCTALLASRQRSL
TREQLTEQLNCYLDLMRNVPYSTDSTVPSASASELIDHALQMNKFEVEKDTIGDIIILPR
EQAVLMTYYRNNIAHMLVLPSLMAAIVTQHRHISRDVLMEHVNVLYPMLKAELFLRWDRD
ELPDVIDALANEMQRQGLITLQDDELHINPAHSRTLQLLAAGARETLQRYAITFWLLSAN
PSINRGTLEKESRTVAQRLSVLHGINAPEFFDKAVFSSLVLTLRDEGYISDSGDAEPAET
MKVYQLLAELITSDVRLTIESATQGEG

15/01/2012 18:00:14 : INFO  : Checked sequence
15/01/2012 18:00:16 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 18:00:16 : INFO  : PSI-BLAST 3 iterations
15/01/2012 18:03:03 : INFO  : PSI-BLAST 5 iterations
15/01/2012 18:06:57 : INFO  : Finished PSI-BLAST
15/01/2012 18:06:58 : INFO  : Running Buildali to generate a3m file
15/01/2012 18:15:52 : INFO  : Converting to HMM
15/01/2012 18:15:54 : INFO  : Calibrating HMM
15/01/2012 18:16:18 : INFO  : Searching HMM database
15/01/2012 18:35:46 : INFO  : Finished buildali
15/01/2012 18:35:48 : INFO  : Predicting secondary structure
15/01/2012 18:35:55 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 18:35:57 : INFO  : Predicting Disordered regions
15/01/2012 18:35:59 : INFO  : Predicted Disorder (Disopred)
15/01/2012 18:36:01 : INFO  : Running memsat_svm check
15/01/2012 18:39:54 : INFO  : Running memsat_svm full
15/01/2012 18:50:17 : INFO  : Predicted Transmembrane (memsat_svm) ID '9c74607744eb9073'
15/01/2012 18:50:17 : INFO  : Initialising fold library search
15/01/2012 18:50:20 : INFO  : Initialised search input
15/01/2012 18:50:21 : INFO  : Building Ensemble models
15/01/2012 18:50:23 : INFO  : Building hh.d1iuqa_.model.1.pdb
15/01/2012 18:50:32 : INFO  : Building d1iuqa_.1.pdb
15/01/2012 18:50:42 : INFO  : Building d2a07f1.2.pdb
15/01/2012 18:50:53 : INFO  : Building c3hqdB_.3.pdb
15/01/2012 18:51:02 : INFO  : Building c2jlhA_.4.pdb
15/01/2012 18:51:10 : INFO  : Building d2dpwa1.5.pdb
15/01/2012 18:51:22 : INFO  : Building c3tevA_.6.pdb
15/01/2012 18:51:33 : INFO  : Building d1tr9a_.7.pdb
15/01/2012 18:51:41 : INFO  : Building d2p6ra1.8.pdb
15/01/2012 18:51:50 : INFO  : Building d1t3la2.9.pdb
15/01/2012 18:51:59 : INFO  : Building c1e17A_.10.pdb
15/01/2012 18:52:07 : INFO  : Building c3s2wB_.11.pdb
15/01/2012 18:52:17 : INFO  : Building d1vyva2.12.pdb
15/01/2012 18:52:26 : INFO  : Building d1t0hb_.13.pdb
15/01/2012 18:52:36 : INFO  : Building d1vyua2.14.pdb
15/01/2012 18:52:47 : INFO  : Building d1ry6a_.15.pdb
15/01/2012 18:52:58 : INFO  : Building c1ry6A_.16.pdb
15/01/2012 18:53:08 : INFO  : Building d1wj5a_.17.pdb
15/01/2012 18:53:16 : INFO  : Building d1z6ra1.18.pdb
15/01/2012 18:53:24 : INFO  : Building d2c6ya1.19.pdb
15/01/2012 18:53:32 : INFO  : Building d1mvoa_.20.pdb
15/01/2012 18:53:52 : INFO  : Finished HH model building
15/01/2012 18:53:53 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 18:54:40 : INFO  : html domain output complete ID '9c74607744eb9073'
15/01/2012 19:15:28 : INFO  : Run end  : Sun Jan 15 19:15:28 GMT 2012
