PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3qfwB_

Fold library id	PDB Header	Molecule	Title
c3qfwB_	PDB header: lyase	Chain: B: PDB Molecule: ribulose-1,5-bisphosphate carboxylase/oxygenase large	PDBTitle: crystal structure of rubisco-like protein from rhodopseudomonas2 palustris

Links to external resources
Added to library: Sat Feb 12 08:46:12 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T E P R I V A T Y H I A S D A E R I E Q R A L A L A I E Q S V E C P L E A I N I V G R V E D V A E L Q P G R Y A V R I G L A A A T A P A E P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
-
T T T
S
G G G
S
T T
G G G S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G Q L L N M L F G N S S I Q P D I A L A D V E L P A H Y L T A F G G P R V G L A G I R T L T G A Q S R A L T A S A L K P Q G L S P A A L A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T G G G
S S B
B
S S T
S S S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I A H Q L A L G G V D L I K D D H G L A D Q A F S P F A E R A A A V G K A V R E A N A A R G G R T L Y A P N I S G T L D D M R R Q L G V I R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
S S
T T S
T
B
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence D E G I G A V L V A P M I V G V S N F H A I V K E A A G L V V V A H P A M A G A A K I A A P L L L G R L F R L F G A D A T V F P N Y G G R F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T
T T T T S S
B
T T
S
T T S S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence A Y S T A S C L A L A Q A A R D P F G K L N A C I P T P A G G I M L Q R V N E L L R F Y G Q D V M L L I R L T E Q A S R F V N K V A D Y G Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S S
T T T
S S
T T S

. .

Sequence R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	E	P	R	I	V	A	T	Y	H	I	A	S	D	A	E	R	I	E	Q	R	A	L	A	L	A	I	E	Q	S	V	E	C	P	L	E	A	I	N	I	V	G	R	V	E	D	V	A	E	L	Q	P	G	R	Y	A	V	R	I	G	L	A	A	A	T	A	P	A	E	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								-																					T	T	T		S		G	G	G				S											T	T										G	G	G	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	Q	L	L	N	M	L	F	G	N	S	S	I	Q	P	D	I	A	L	A	D	V	E	L	P	A	H	Y	L	T	A	F	G	G	P	R	V	G	L	A	G	I	R	T	L	T	G	A	Q	S	R	A	L	T	A	S	A	L	K	P	Q	G	L	S	P	A	A	L	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	G	G	G		S	S			B				B													S	S										T		S	S	S										T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	A	H	Q	L	A	L	G	G	V	D	L	I	K	D	D	H	G	L	A	D	Q	A	F	S	P	F	A	E	R	A	A	A	V	G	K	A	V	R	E	A	N	A	A	R	G	G	R	T	L	Y	A	P	N	I	S	G	T	L	D	D	M	R	R	Q	L	G	V	I	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T		S						T	T		S	S		T	T	S																					T								B			S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	D	E	G	I	G	A	V	L	V	A	P	M	I	V	G	V	S	N	F	H	A	I	V	K	E	A	A	G	L	V	V	V	A	H	P	A	M	A	G	A	A	K	I	A	A	P	L	L	L	G	R	L	F	R	L	F	G	A	D	A	T	V	F	P	N	Y	G	G	R	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T																					T	T		T	T								T	T	T	T	S	S		B							T							T		S							T	T	S	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	Y	S	T	A	S	C	L	A	L	A	Q	A	A	R	D	P	F	G	K	L	N	A	C	I	P	T	P	A	G	G	I	M	L	Q	R	V	N	E	L	L	R	F	Y	G	Q	D	V	M	L	L	I	R	L	T	E	Q	A	S	R	F	V	N	K	V	A	D	Y	G	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S			T	T										S	S			T	T	T										S	S																					T	T	S
	.	.
Sequence	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)