Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	I	A	I	V	I	G	T	H	G	W	A	A	E	Q	L	L	K	T	A	E	M	L	L	G	E	Q	E	N	V	G	W	I	D	F	V	P	G	E	N	A	E	T	L	I	E	K	Y	N	A	Q	L	A	K	L	D	T	T	K
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	V	L	F	L	V	D	T	W	G	G	S	P	F	N	A	A	S	R	I	V	V	D	K	E	H	Y	E	V	I	A	G	V	N	I	P	M	L	V	E	T	L	M	A	R	D	D	D	P	S	F	D	E	L	V	A	L	A	V	E
Secondary structure
SS confidence
Disorder																																													?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	G	R	E	G	V	K	A	L	K	A	K	P	V	E	K	A	A	P	A	P	A	A	A	A	P	K	A	A	P	T	P	A	K	P	M	G	P	N	D	Y	M	V	I	G	L	A	R	I	D	D	R	L	I	H	G	Q	V	A	T
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	W	T	K	E	T	N	V	S	R	I	I	V	V	S	D	E	V	A	A	D	T	V	R	K	T	L	L	T	Q	V	A	P	P	G	V	T	A	H	V	V	D	V	A	K	M	I	R	V	Y	N	N	P	K	Y	A	G	E	R	V
Secondary structure
SS confidence
Disorder																																																					?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		M	L	L	F	T	N	P	T	D	V	E	R	L	V	E	G	G	V	K	I	T	S	V	N	V	G	G	M	A	F	R	Q	G	K	T	Q	V	N	N	A	V	S	V	D	E	K	D	I	E	A	F	K	K	L	N	A	R	G	I	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Sequence		L	E	V	R	K	V	S	T	D	P	K	L	K	M	M	D	L	I	S	K	I	D	K
Secondary structure
SS confidence
Disorder												?											?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vsq chain C Region: 159 - 323 Aligned: 165 Modelled: 165 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: C: PDB Molecule:mannose-specific phosphotransferase enzyme iib PDBTitle: solution nmr structure of the productive complex between2 iiamannose and iibmannose of the mannose transporter of3 the e. coli phosphotransferase system Phyre2 PDB 1nrz chain A Region: 162 - 321 Aligned: 160 Modelled: 160 Confidence: 100.0% Identity: 51% Fold: PTS IIb component Superfamily: PTS IIb component Family: PTS IIb component Phyre2 PDB 1ble chain A Region: 162 - 321 Aligned: 160 Modelled: 160 Confidence: 100.0% Identity: 48% Fold: PTS IIb component Superfamily: PTS IIb component Family: PTS IIb component Phyre2 PDB 3lfj chain B Region: 159 - 321 Aligned: 163 Modelled: 163 Confidence: 100.0% Identity: 32% PDB header:transferase Chain: B: PDB Molecule:phosphotransferase system, mannose/fructose/n- PDBTitle: crystal structure of manxb from thermoanaerobacter tengcongensis Phyre2 PDB 3p3v chain B Region: 158 - 321 Aligned: 162 Modelled: 164 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: B: PDB Molecule:pts system, n-acetylgalactosamine-specific iib component; PDBTitle: crystal structure of a pts dependent n-acetyl-galactosamine-iib2 component (agav, spy_0631) from streptococcus pyogenes at 1.65 a3 resolution Phyre2 PDB 3eye chain A Region: 163 - 314 Aligned: 151 Modelled: 152 Confidence: 100.0% Identity: 34% PDB header:transferase Chain: A: PDB Molecule:pts system n-acetylgalactosamine-specific iib PDBTitle: crystal structure of pts system n-acetylgalactosamine-2 specific iib component 1 from escherichia coli Phyre2 PDB 1pdo chain A Region: 2 - 130 Aligned: 129 Modelled: 129 Confidence: 100.0% Identity: 100% Fold: PTS system fructose IIA component-like Superfamily: PTS system fructose IIA component-like Family: EIIA-man component-like Phyre2 PDB 3ipr chain C Region: 3 - 133 Aligned: 131 Modelled: 131 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: C: PDB Molecule:pts system, iia component; PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component Phyre2 PDB 3lfh chain F Region: 2 - 131 Aligned: 128 Modelled: 130 Confidence: 100.0% Identity: 34% PDB header:transferase Chain: F: PDB Molecule:phosphotransferase system, mannose/fructose-specific PDBTitle: crystal structure of manxa from thermoanaerobacter tengcongensis Phyre2 PDB 3bed chain A domain 1 Region: 4 - 132 Aligned: 125 Modelled: 0 Confidence: 100.0% Identity: 23% Fold: PTS system fructose IIA component-like Superfamily: PTS system fructose IIA component-like Family: EIIA-man component-like Phyre2 PDB 3mtq chain A Region: 2 - 130 Aligned: 126 Modelled: 129 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:putative phosphoenolpyruvate-dependent sugar PDBTitle: crystal structure of a putative phosphoenolpyruvate-dependent sugar2 phosphotransferase system (pts) permease (kpn_04802) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.70 a resolution Phyre2 PDB 3gx1 chain A Region: 2 - 124 Aligned: 121 Modelled: 123 Confidence: 99.9% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin1832 protein; PDBTitle: crystal structure of a domain of lin1832 from listeria innocua Phyre2 PDB 3b48 chain A domain 1 Region: 2 - 125 Aligned: 123 Modelled: 124 Confidence: 99.8% Identity: 11% Fold: PTS system fructose IIA component-like Superfamily: PTS system fructose IIA component-like Family: DhaM-like Phyre2 PDB 3gdw chain A Region: 2 - 130 Aligned: 126 Modelled: 129 Confidence: 99.3% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma-54 interaction domain protein; PDBTitle: crystal structure of sigma-54 interaction domain protein from2 enterococcus faecalis Phyre2 PDB 3ct6 chain A domain 1 Region: 1 - 121 Aligned: 117 Modelled: 121 Confidence: 99.1% Identity: 15% Fold: PTS system fructose IIA component-like Superfamily: PTS system fructose IIA component-like Family: DhaM-like Phyre2 PDB 3edl chain A Region: 9 - 91 Aligned: 66 Modelled: 66 Confidence: 87.9% Identity: 14% PDB header:structural protein Chain: A: PDB Molecule:alpha-tubulin; PDBTitle: kinesin13-microtubule ring complex Phyre2 PDB 2dt8 chain A Region: 41 - 129 Aligned: 85 Modelled: 89 Confidence: 86.2% Identity: 15% PDB header:lipid binding protein Chain: A: PDB Molecule:degv family protein; PDBTitle: fatty acid binding of a degv family protein from thermus thermophilus Phyre2 PDB 3lup chain A Region: 41 - 129 Aligned: 86 Modelled: 89 Confidence: 82.2% Identity: 12% PDB header:structure genomics, unknown function Chain: A: PDB Molecule:degv family protein; PDBTitle: crystal structure of fatty acid binding degv family protein sag13422 from streptococcus agalactiae Phyre2 PDB 2g7z chain B Region: 41 - 129 Aligned: 86 Modelled: 89 Confidence: 82.0% Identity: 15% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein spy1493; PDBTitle: conserved degv-like protein of unknown function from streptococcus2 pyogenes m1 gas binds long-chain fatty acids Phyre2 PDB 2btq chain B Region: 9 - 91 Aligned: 66 Modelled: 66 Confidence: 80.8% Identity: 17% PDB header:structural protein Chain: B: PDB Molecule:tubulin btubb; PDBTitle: structure of btubab heterodimer from prosthecobacter2 dejongeii Phyre2 1 c1vsqC_ 2 d1nrza_ 3 d1blea_ 4 c3lfjB_ 5 c3p3vB_ 6 c3eyeA_ 7 d1pdoa_ 8 c3iprC_ 9 c3lfhF_ 10 d3beda1 11 c3mtqA_ 12 c3gx1A_ 13 d3b48a1 14 c3gdwA_ 15 d3ct6a1 16 c3edlA_ 17 c2dt8A_ 18 c3lupA_ 19 c2g7zB_ 20 c2btqB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1vsqC_ 100.0 100 PDB header:transferase Chain: C: PDB Molecule:mannose-specific phosphotransferase enzyme iib PDBTitle: solution nmr structure of the productive complex between2 iiamannose and iibmannose of the mannose transporter of3 the e. coli phosphotransferase system 2 d1nrza_ 100.0 51 Fold:PTS IIb component Superfamily:PTS IIb component Family:PTS IIb component 3 d1blea_ 100.0 48 Fold:PTS IIb component Superfamily:PTS IIb component Family:PTS IIb component 4 c3lfjB_ 100.0 32 PDB header:transferase Chain: B: PDB Molecule:phosphotransferase system, mannose/fructose/n- PDBTitle: crystal structure of manxb from thermoanaerobacter tengcongensis 5 c3p3vB_ 100.0 25 PDB header:transferase Chain: B: PDB Molecule:pts system, n-acetylgalactosamine-specific iib component; PDBTitle: crystal structure of a pts dependent n-acetyl-galactosamine-iib2 component (agav, spy_0631) from streptococcus pyogenes at 1.65 a3 resolution 6 c3eyeA_ 100.0 34 PDB header:transferase Chain: A: PDB Molecule:pts system n-acetylgalactosamine-specific iib PDBTitle: crystal structure of pts system n-acetylgalactosamine-2 specific iib component 1 from escherichia coli 7 d1pdoa_ 100.0 100 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:EIIA-man component-like 8 c3iprC_ 100.0 25 PDB header:transferase Chain: C: PDB Molecule:pts system, iia component; PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component 9 c3lfhF_ 100.0 34 PDB header:transferase Chain: F: PDB Molecule:phosphotransferase system, mannose/fructose-specific PDBTitle: crystal structure of manxa from thermoanaerobacter tengcongensis 10 d3beda1 100.0 23 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:EIIA-man component-like 11 c3mtqA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:putative phosphoenolpyruvate-dependent sugar PDBTitle: crystal structure of a putative phosphoenolpyruvate-dependent sugar2 phosphotransferase system (pts) permease (kpn_04802) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.70 a resolution 12 c3gx1A_ 99.9 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin1832 protein; PDBTitle: crystal structure of a domain of lin1832 from listeria innocua 13 d3b48a1 99.8 11 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:DhaM-like 14 c3gdwA_ 99.3 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma-54 interaction domain protein; PDBTitle: crystal structure of sigma-54 interaction domain protein from2 enterococcus faecalis 15 d3ct6a1 99.1 15 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:DhaM-like 16 c3edlA_ 87.9 14 PDB header:structural protein Chain: A: PDB Molecule:alpha-tubulin; PDBTitle: kinesin13-microtubule ring complex 17 c2dt8A_ 86.2 15 PDB header:lipid binding protein Chain: A: PDB Molecule:degv family protein; PDBTitle: fatty acid binding of a degv family protein from thermus thermophilus 18 c3lupA_ 82.2 12 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:degv family protein; PDBTitle: crystal structure of fatty acid binding degv family protein sag13422 from streptococcus agalactiae 19 c2g7zB_ 82.0 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein spy1493; PDBTitle: conserved degv-like protein of unknown function from streptococcus2 pyogenes m1 gas binds long-chain fatty acids 20 c2btqB_ 80.8 17 PDB header:structural protein Chain: B: PDB Molecule:tubulin btubb; PDBTitle: structure of btubab heterodimer from prosthecobacter2 dejongeii 21 c3lcmB_ not modelled 74.2 16 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 22 c2btoA_ not modelled 71.9 14 PDB header:cytoskeletal protein Chain: A: PDB Molecule:tubulin btuba; PDBTitle: structure of btuba from prosthecobacter dejongeii 23 c2p4nB_ not modelled 71.8 8 PDB header:transport protein Chain: B: PDB Molecule:tubulin beta chain; PDBTitle: human monomeric kinesin (1bg2) and bovine tubulin (1jff)2 docked into the 9-angstrom cryo-em map of nucleotide-free3 kinesin complexed to the microtubule 24 c3nyiA_ not modelled 70.4 15 PDB header:lipid binding protein Chain: A: PDB Molecule:fat acid-binding protein; PDBTitle: the crystal structure of a fat acid (stearic acid)-binding protein2 from eubacterium ventriosum atcc 27560. 25 d2czca2 not modelled 70.0 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 26 c2qvcC_ not modelled 69.6 9 PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima 27 d2btoa1 not modelled 68.3 14 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 28 c1mgpA_ not modelled 66.3 17 PDB header:lipid binding protein Chain: A: PDB Molecule:hypothetical protein tm841; PDBTitle: hypothetical protein tm841 from thermotoga maritima reveals2 fatty acid binding function 29 d1mgpa_ not modelled 66.3 17 Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DegV-like 30 d1pzxa_ not modelled 66.3 12 Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DegV-like 31 d1tuba1 not modelled 64.9 13 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 32 c3rfaA_ not modelled 61.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine 33 d1tubb1 not modelled 60.8 8 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 34 c1z5wA_ not modelled 57.7 14 PDB header:structural protein Chain: A: PDB Molecule:tubulin gamma-1 chain; PDBTitle: crystal structure of gamma-tubulin bound to gtp 35 d1xm7a_ not modelled 54.3 19 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Hypothetical protein aq 1666 36 c3ilhA_ not modelled 51.4 12 PDB header:transcription regulator Chain: A: PDB Molecule:two component response regulator; PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii 37 d1t0ia_ not modelled 48.7 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 38 c2is8A_ not modelled 48.6 17 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 39 c3l0gD_ not modelled 48.3 17 PDB header:transferase Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution 40 c1qapA_ not modelled 45.2 16 PDB header:glycosyltransferase Chain: A: PDB Molecule:quinolinic acid phosphoribosyltransferase; PDBTitle: quinolinic acid phosphoribosyltransferase with bound2 quinolinic acid 41 c3gl9B_ not modelled 44.1 9 PDB header:signaling protein Chain: B: PDB Molecule:response regulator; PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism 42 c4a26B_ not modelled 43.8 11 PDB header:oxidoreductase Chain: B: PDB Molecule:putative c-1-tetrahydrofolate synthase, cytoplasmic; PDBTitle: the crystal structure of leishmania major n5,n10-2 methylenetetrahydrofolate dehydrogenase/cyclohydrolase 43 d1rtta_ not modelled 42.9 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 44 c3khtA_ not modelled 41.5 20 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator from hahella chejuensis 45 c3p2oA_ not modelled 40.8 11 PDB header:oxidoreductase, hydrolase Chain: A: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni 46 c3p2oB_ not modelled 40.6 11 PDB header:oxidoreductase, hydrolase Chain: B: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni 47 c3q41B_ not modelled 40.2 20 PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) 48 c3fysA_ not modelled 39.9 13 PDB header:fatty acid-binding protein Chain: A: PDB Molecule:protein degv; PDBTitle: crystal structure of degv, a fatty acid binding protein2 from bacillus subtilis 49 c3eqzB_ not modelled 39.3 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea 50 d1tjna_ not modelled 37.2 18 Fold:Chelatase-like Superfamily:Chelatase Family:CbiX-like 51 c1tjnA_ not modelled 37.2 18 PDB header:lyase Chain: A: PDB Molecule:sirohydrochlorin cobaltochelatase; PDBTitle: crystal structure of hypothetical protein af0721 from archaeoglobus2 fulgidus 52 d2obba1 not modelled 36.8 10 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 53 d1r8ja2 not modelled 36.0 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:N-terminal domain of the circadian clock protein KaiA 54 d1t0kb_ not modelled 35.8 8 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 55 d2qwxa1 not modelled 35.5 23 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 56 c3l07B_ not modelled 35.1 10 PDB header:oxidoreductase,hydrolase Chain: B: PDB Molecule:bifunctional protein fold; PDBTitle: methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate2 cyclohydrolase, putative bifunctional protein fold from francisella3 tularensis. 57 c4a5oB_ not modelled 34.7 10 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of pseudomonas aeruginosa n5, n10-2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold) 58 c3n53B_ not modelled 34.5 7 PDB header:transcription Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase; PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus 59 c3eywA_ not modelled 34.1 17 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 60 c3cz5B_ not modelled 33.3 21 PDB header:transcription regulator Chain: B: PDB Molecule:two-component response regulator, luxr family; PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1 61 c2qv0A_ not modelled 33.2 17 PDB header:transcription Chain: A: PDB Molecule:protein mrke; PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae 62 c2p10D_ not modelled 32.2 13 PDB header:hydrolase Chain: D: PDB Molecule:mll9387 protein; PDBTitle: crystal structure of a putative phosphonopyruvate hydrolase (mll9387)2 from mesorhizobium loti maff303099 at 2.15 a resolution 63 c2pjkA_ not modelled 31.2 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 64 d1k66a_ not modelled 30.9 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 65 c3h6hB_ not modelled 30.1 9 PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form 66 c3sajB_ not modelled 29.7 9 PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 1; PDBTitle: crystal structure of glutamate receptor glua1 amino terminal domain 67 c2rjoA_ not modelled 29.5 16 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans 68 c1zfjA_ not modelled 28.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes 69 c3lftA_ not modelled 28.2 8 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a 70 d1a04a2 not modelled 28.1 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 71 c1b0aA_ not modelled 27.6 14 PDB header:oxidoreductase,hydrolase Chain: A: PDB Molecule:protein (fold bifunctional protein); PDBTitle: 5,10, methylene-tetrahydropholate2 dehydrogenase/cyclohydrolase from e coli. 72 d1qrda_ not modelled 27.5 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 73 c3cnbC_ not modelled 26.9 11 PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h 74 c3lyhB_ not modelled 26.9 21 PDB header:lyase Chain: B: PDB Molecule:cobalamin (vitamin b12) biosynthesis cbix protein; PDBTitle: crystal structure of putative cobalamin (vitamin b12) biosynthesis2 cbix protein (yp_958415.1) from marinobacter aquaeolei vt8 at 1.60 a3 resolution 75 c3pm7A_ not modelled 26.7 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of ef_3132 protein from enterococcus faecalis at the2 resolution 2a, northeast structural genomics consortium target efr184 76 d2jfga2 not modelled 26.5 15 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 77 c2k1oA_ not modelled 26.2 11 PDB header:gene regulation Chain: A: PDB Molecule:putative; PDBTitle: nmr structure of helicobacter pylori jhp0511 (hp0564). 78 d1w41a1 not modelled 26.0 14 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 79 c2qsjB_ not modelled 25.0 14 PDB header:transcription Chain: B: PDB Molecule:dna-binding response regulator, luxr family; PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi 80 c3iefA_ not modelled 24.8 19 PDB header:transferase, rna binding protein Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna guanine-n1-methyltransferase from2 bartonella henselae using mpcs. 81 c1mgtA_ not modelled 24.3 15 PDB header:transferase Chain: A: PDB Molecule:protein (o6-methylguanine-dna methyltransferase); PDBTitle: crystal structure of o6-methylguanine-dna methyltransferase from2 hyperthermophilic archaeon pyrococcus kodakaraensis strain kod1 82 d2p10a1 not modelled 23.7 12 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Mll9387-like 83 c2hqbA_ not modelled 23.4 6 PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans 84 c3cg0A_ not modelled 22.8 16 PDB header:lyase Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding 85 d1mb3a_ not modelled 22.7 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 86 c3hebB_ not modelled 22.6 8 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator receiver domain protein (chey); PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum 87 c2qvgA_ not modelled 22.0 4 PDB header:transferase Chain: A: PDB Molecule:two component response regulator; PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila 88 c3ho6B_ not modelled 21.6 11 PDB header:toxin Chain: B: PDB Molecule:toxin a; PDBTitle: structure-function analysis of inositol hexakisphosphate-2 induced autoprocessing in clostridium difficile toxin a 89 c2qxyB_ not modelled 21.4 14 PDB header:transcription Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from thermotoga2 maritima 90 c3eglC_ not modelled 21.3 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:degv family protein; PDBTitle: crystal structure of degv family protein cg2579 from corynebacterium2 glutamicum 91 c2p1zA_ not modelled 21.3 16 PDB header:transferase Chain: A: PDB Molecule:phosphoribosyltransferase; PDBTitle: crystal structure of phosphoribosyltransferase from corynebacterium2 diphtheriae 92 c1dd9A_ not modelled 21.0 18 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core 93 d1dd9a_ not modelled 21.0 18 Fold:DNA primase core Superfamily:DNA primase core Family:DNA primase DnaG catalytic core 94 c1pd7B_ not modelled 20.9 45 PDB header:transcription Chain: B: PDB Molecule:mad1; PDBTitle: extended sid of mad1 bound to the pah2 domain of msin3b 95 c2c2xB_ not modelled 20.9 13 PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase- PDBTitle: three dimensional structure of bifunctional2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase3 from mycobacterium tuberculosis 96 d2i7pa1 not modelled 20.7 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 97 c3kg2A_ not modelled 20.6 11 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:glutamate receptor 2; PDBTitle: ampa subtype ionotropic glutamate receptor in complex with competitive2 antagonist zk 200775 98 c3om1A_ not modelled 20.6 8 PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor gluk5 (ka2); PDBTitle: crystal structure of the gluk5 (ka2) atd dimer at 1.7 angstrom2 resolution 99 c2kbfA_ not modelled 20.5 18 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dbp5; PDBTitle: solution structure of carboxyl-terminal domain of dbp5p 100 d1qpoa1 not modelled 20.4 9 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0