Email l.a.kelley@imperial.ac.uk Description P41067 Date Thu Jan 5 12:01:24 GMT 2012 Unique Job ID 970488b0d5b08b2d

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3jqoV_ 99.9 15 PDB header:transport protein Chain: V: PDB Molecule:traf protein; PDBTitle: crystal structure of the outer membrane complex of a type iv2 secretion system 2 c2bhvC_ 99.8 19 PDB header:bacterial protein Chain: C: PDB Molecule:comb10; PDBTitle: structure of comb10 of the com type iv secretion system of2 helicobacter pylori 3 c3ghgK_ 63.9 5 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 4 c1ei3E_ 52.3 5 PDB header: PDB COMPND: 5 c3n4xB_ 46.4 13 PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length 6 c3m9bK_ 43.6 22 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 7 c1deqO_ 41.4 5 PDB header: PDB COMPND: 8 c1deqF_ 39.1 11 PDB header: PDB COMPND: 9 c3l9oA_ 38.7 12 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome 10 c3ojaB_ 38.3 24 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 11 c3hnwB_ 36.0 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 12 c2jeeA_ 25.4 18 PDB header:cell cycle Chain: A: PDB Molecule:yiiu; PDBTitle: xray structure of e. coli yiiu 13 d1d0gr1 22.9 55 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:TNF receptor-like 14 c2x7aB_ 22.8 26 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 15 c3a7pB_ 22.3 10 PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16 16 c3dtpA_ 21.7 11 PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map 17 c2oqqB_ 20.8 17 PDB header:transcription Chain: B: PDB Molecule:transcription factor hy5; PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana 18 c2xzrA_ 19.6 13 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 19 d2fd6u3 19.5 26 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Extracellular domain of cell surface receptors 20 c2hpcF_ 19.5 14 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 21 c1cz7C_ not modelled 18.7 13 PDB header:contractile protein Chain: C: PDB Molecule:microtubule motor protein ncd; PDBTitle: the crystal structure of a minus-end directed microtubule2 motor protein ncd reveals variable dimer conformations 22 c2xgjA_ not modelled 18.5 13 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance 23 c2w6aB_ not modelled 18.3 22 PDB header:signaling protein Chain: B: PDB Molecule:arf gtpase-activating protein git1; PDBTitle: x-ray structure of the dimeric git1 coiled-coil domain 24 c3oa7A_ not modelled 18.2 17 PDB header:structural protein Chain: A: PDB Molecule:head morphogenesis protein, chaotic nuclear migration PDBTitle: structure of the c-terminal domain of cnm67, a core component of the2 spindle pole body of saccharomyces cerevisiae 25 c1junB_ not modelled 17.5 11 PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer 26 c2yy0D_ not modelled 15.6 3 PDB header:transcription Chain: D: PDB Molecule:c-myc-binding protein; PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens 27 c1n73C_ not modelled 15.4 8 PDB header:blood clotting Chain: C: PDB Molecule:fibrin gamma chain; PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide 28 c2z0fA_ not modelled 15.3 9 PDB header:isomerase Chain: A: PDB Molecule:putative phosphoglucomutase; PDBTitle: crystal structure of putative phosphoglucomutase from thermus2 thermophilus hb8 29 c2jo1A_ not modelled 14.4 17 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 30 d1gpia_ not modelled 13.2 19 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Glycosyl hydrolase family 7 catalytic core 31 c1dipA_ not modelled 13.0 18 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 32 d1ogda_ not modelled 12.9 16 Fold:RbsD-like Superfamily:RbsD-like Family:RbsD-like 33 d2ncda_ not modelled 12.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Motor proteins 34 d1fxkc_ not modelled 12.7 11 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 35 c1jocA_ not modelled 12.7 13 PDB header:membrane protein Chain: A: PDB Molecule:early endosomal autoantigen 1; PDBTitle: eea1 homodimer of c-terminal fyve domain bound to inositol2 1,3-diphosphate 36 c3he5D_ not modelled 12.7 18 PDB header:de novo protein Chain: D: PDB Molecule:synzip2; PDBTitle: heterospecific coiled-coil pair synzip2:synzip1 37 c2wl2B_ not modelled 12.0 16 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8 38 c3hizB_ not modelled 11.8 9 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha 39 c3cvfA_ not modelled 11.3 12 PDB header:signaling protein Chain: A: PDB Molecule:homer protein homolog 3; PDBTitle: crystal structure of the carboxy terminus of homer3 40 c3h9mA_ not modelled 11.2 20 PDB header:lyase Chain: A: PDB Molecule:p-aminobenzoate synthetase, component i; PDBTitle: crystal structure of para-aminobenzoate synthetase,2 component i from cytophaga hutchinsonii 41 d1ykhb1 not modelled 11.2 20 Fold:Mediator hinge subcomplex-like Superfamily:Mediator hinge subcomplex-like Family:CSE2-like 42 c3hd7A_ not modelled 11.2 13 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 43 c3ni0A_ not modelled 11.1 17 PDB header:immune system Chain: A: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of mouse bst-2/tetherin ectodomain 44 c2wukD_ not modelled 10.6 8 PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant 45 c2x5qA_ not modelled 10.6 16 PDB header:unknown function Chain: A: PDB Molecule:sso1986; PDBTitle: crystal structure of hypothetical protein sso1986 from2 sulfolobus solfataricus p2 46 d1ivsa1 not modelled 10.4 10 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 47 c3q0xA_ not modelled 10.3 12 PDB header:structural protein Chain: A: PDB Molecule:centriole protein; PDBTitle: n-terminal coiled-coil dimer domain of c. reinhardtii sas-6 homolog2 bld12p 48 c2gl2B_ not modelled 9.9 10 PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada 49 c3i3wB_ not modelled 9.6 20 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: structure of a phosphoglucosamine mutase from francisella tularensis 50 d2ga1a1 not modelled 9.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Alr1493-like 51 c2aanA_ not modelled 9.4 31 PDB header:electron transport Chain: A: PDB Molecule:auracyanin a; PDBTitle: auracyanin a: a "blue" copper protein from the green thermophilic2 photosynthetic bacterium,chloroflexus aurantiacus 52 c2fuvB_ not modelled 9.4 8 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucomutase; PDBTitle: phosphoglucomutase from salmonella typhimurium. 53 d1e30a_ not modelled 9.2 33 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 54 d2ob5a1 not modelled 9.1 24 Fold:RbsD-like Superfamily:RbsD-like Family:RbsD-like 55 c1ci6A_ not modelled 9.1 16 PDB header:transcription Chain: A: PDB Molecule:transcription factor atf-4; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 56 c2ykqC_ not modelled 9.0 13 PDB header:rna-binding protein Chain: C: PDB Molecule:line-1 orf1p; PDBTitle: structure of the human line-1 orf1p trimer 57 c3ol1A_ not modelled 8.9 8 PDB header:structural protein Chain: A: PDB Molecule:vimentin; PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b 58 c1cosC_ not modelled 8.5 16 PDB header:alpha-helical bundle Chain: C: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 59 c1cosB_ not modelled 8.5 16 PDB header:alpha-helical bundle Chain: B: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 60 c1cosA_ not modelled 8.5 16 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 61 c2zdiC_ not modelled 8.4 13 PDB header:chaperone Chain: C: PDB Molecule:prefoldin subunit alpha; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 62 c1l4aD_ not modelled 8.4 11 PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:s-snap25 fusion protein; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei 63 c1debA_ not modelled 8.2 26 PDB header:structural protein Chain: A: PDB Molecule:adenomatous polyposis coli protein; PDBTitle: crystal structure of the n-terminal coiled coil domain from2 apc 64 d2axtj1 not modelled 8.2 25 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein J, PsbJ Family:PsbJ-like 65 c3iv1F_ not modelled 8.0 15 PDB header:hydrolase Chain: F: PDB Molecule:tumor susceptibility gene 101 protein; PDBTitle: coiled-coil domain of tumor susceptibility gene 101 66 d2rkya2 not modelled 8.0 27 Fold:FnI-like domain Superfamily:FnI-like domain Family:Fibronectin type I module 67 c3u59C_ not modelled 7.7 8 PDB header:contractile protein Chain: C: PDB Molecule:tropomyosin beta chain; PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta 68 c1tuoA_ not modelled 7.5 14 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative phosphomannomutase; PDBTitle: crystal structure of putative phosphomannomutase from2 thermus thermophilus hb8 69 c1jccC_ not modelled 7.3 7 PDB header:membrane protein Chain: C: PDB Molecule:major outer membrane lipoprotein; PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations 70 d1sdda1 not modelled 7.3 25 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 71 c2js5B_ not modelled 7.3 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of protein q60c73_metca. northeast structural2 genomics consortium target mcr1 72 d2phcb1 not modelled 7.3 21 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 73 c3bvhC_ not modelled 7.2 9 PDB header:blood clotting Chain: C: PDB Molecule:fibrinogen gamma chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 74 c2kg4A_ not modelled 7.1 26 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible protein PDBTitle: three-dimensional structure of human gadd45alpha in2 solution by nmr 75 d1tsfa_ not modelled 7.1 13 Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:RNase P subunit p29-like 76 d1qhqa_ not modelled 7.0 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 77 d2cpta1 not modelled 6.9 24 Fold:Spectrin repeat-like Superfamily:MIT domain Family:MIT domain 78 c2phcB_ not modelled 6.7 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii 79 c1fosF_ not modelled 6.7 12 PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 80 c3hvzB_ not modelled 6.7 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 81 c3iynR_ not modelled 6.6 21 PDB header:virus Chain: R: PDB Molecule:hexon-associated protein; PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5 82 c3lqiA_ not modelled 6.5 24 PDB header:transferase Chain: A: PDB Molecule:mll1 phd3-bromo; PDBTitle: crystal structure of mll1 phd3-bromo complexed with h3(1-9)k4me22 peptide 83 c3qo8A_ not modelled 6.5 12 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic; PDBTitle: crystal structure of seryl-trna synthetase from candida albicans 84 d1wr0a1 not modelled 6.5 18 Fold:Spectrin repeat-like Superfamily:MIT domain Family:MIT domain 85 d1hfua1 not modelled 6.4 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 86 c2xgfA_ not modelled 6.3 22 PDB header:viral protein Chain: A: PDB Molecule:long tail fiber protein p37; PDBTitle: structure of the bacteriophage t4 long tail fibre needle-2 shaped receptor-binding tip 87 d1an2a_ not modelled 6.3 11 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 88 c1bf5A_ not modelled 6.1 13 PDB header:gene regulation/dna Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: tyrosine phosphorylated stat-1/dna complex 89 d1l8na2 not modelled 6.1 13 Fold:Zincin-like Superfamily:beta-N-acetylhexosaminidase-like domain Family:alpha-D-glucuronidase, N-terminal domain 90 c3b5nC_ not modelled 6.1 3 PDB header:membrane protein Chain: C: PDB Molecule:protein transport protein sec9; PDBTitle: structure of the yeast plasma membrane snare complex 91 d1nkpa_ not modelled 6.0 20 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 92 c3demB_ not modelled 6.0 21 PDB header:hydrolase Chain: B: PDB Molecule:complement factor masp-3; PDBTitle: cub1-egf-cub2 domain of human masp-1/3 93 c2eqbC_ not modelled 5.9 12 PDB header:endocytosis/exocytosis Chain: C: PDB Molecule:rab guanine nucleotide exchange factor sec2; PDBTitle: crystal structure of the rab gtpase sec4p, the sec2p gef2 domain, and phosphate complex 94 c2rfyB_ not modelled 5.9 12 PDB header:hydrolase Chain: B: PDB Molecule:cellulose 1,4-beta-cellobiosidase; PDBTitle: crystal structure of cellobiohydrolase from melanocarpus2 albomyces complexed with cellobiose 95 c1coiA_ not modelled 5.8 12 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coil-vald; PDBTitle: designed trimeric coiled coil-vald 96 c1zbtA_ not modelled 5.7 12 PDB header:translation Chain: A: PDB Molecule:peptide chain release factor 1; PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution 97 d2h8pc1 not modelled 5.7 11 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 98 d1gyca1 not modelled 5.7 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 99 c3bg4D_ not modelled 5.7 45 PDB header:hydrolase/hydrolase inhibitor Chain: D: PDB Molecule:guamerin; PDBTitle: the crystal structure of guamerin in complex with2 chymotrypsin and the development of an elastase-specific3 inhibitor