Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP24240
DateThu Jan 5 11:41:32 GMT 2012
Unique Job ID9674c14e78c57ea2

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3pn8A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:putative phospho-beta-glucosidase;
PDBTitle: the crystal structure of 6-phospho-beta-glucosidase from streptococcus2 mutans ua159
Confidence and coverage
Confidence:100.0% Coverage: 99%
467 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSVFPESFLWGGALAANQSEGAFREGDKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEF
Secondary structure 
SS confidence 
Disorder  ???????
???
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  YPSHEATDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDEITPNQQGIAFYRSVFEE
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  CKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKLVEFFSRYARTCFEAFDGLVKYWLTFNE
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  INIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASALATKIAHEVNPQNQVGCMLAGG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  NFYPYSCKPEDVWAALEKDRENLFFIDVQARGTYPAYSARVFREKGVTINKAPGDDEILK
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  NTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMM
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  YDRYQKPLFLVENGLGAKDEFAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWG
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470....
Sequence  CIDLVSASTGEMSKRYGFVFVDRDDAGNGTLTRTRKKSFWWYKKVIASNGEDLE
Secondary structure 
SS confidence 
Disorder 
?
???
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3pn8 chain A

3D model

Region: 2 - 473
Aligned: 467
Modelled: 472
Confidence: 100.0%
Identity: 49%
PDB header:hydrolase
Chain: A: PDB Molecule:putative phospho-beta-glucosidase;
PDBTitle: the crystal structure of 6-phospho-beta-glucosidase from streptococcus2 mutans ua159

Phyre2

PDB 1qox chain A

3D model

Region: 1 - 473
Aligned: 446
Modelled: 456
Confidence: 100.0%
Identity: 34%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2

PDB 2xhy chain D

3D model

Region: 2 - 473
Aligned: 456
Modelled: 460
Confidence: 100.0%
Identity: 54%
PDB header:hydrolase
Chain: D: PDB Molecule:6-phospho-beta-glucosidase bgla;
PDBTitle: crystal structure of e.coli bgla

Phyre2

PDB 3qom chain A

3D model

Region: 2 - 474
Aligned: 465
Modelled: 473
Confidence: 100.0%
Identity: 49%
PDB header:hydrolase
Chain: A: PDB Molecule:6-phospho-beta-glucosidase;
PDBTitle: crystal structure of 6-phospho-beta-glucosidase from lactobacillus2 plantarum

Phyre2

PDB 2j78 chain A domain 1

3D model

Region: 1 - 472
Aligned: 439
Modelled: 458
Confidence: 100.0%
Identity: 33%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2

PDB 3fiy chain A

3D model

Region: 2 - 472
Aligned: 438
Modelled: 457
Confidence: 100.0%
Identity: 33%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of bglb

Phyre2

PDB 1e4i chain A

3D model

Region: 1 - 474
Aligned: 444
Modelled: 459
Confidence: 100.0%
Identity: 33%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2

PDB 3ahx chain C

3D model

Region: 2 - 469
Aligned: 438
Modelled: 448
Confidence: 100.0%
Identity: 33%
PDB header:hydrolase
Chain: C: PDB Molecule:beta-glucosidase a;
PDBTitle: crystal structure of beta-glucosidase a from bacterium clostridium2 cellulovorans

Phyre2

PDB 1gnx chain A

3D model

Region: 3 - 471
Aligned: 441
Modelled: 451
Confidence: 100.0%
Identity: 32%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2

PDB 2dga chain A

3D model

Region: 3 - 468
Aligned: 444
Modelled: 453
Confidence: 100.0%
Identity: 30%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of hexameric beta-glucosidase in wheat

Phyre2

PDB 2j75 chain A

3D model

Region: 1 - 472
Aligned: 437
Modelled: 457
Confidence: 100.0%
Identity: 32%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase a;
PDBTitle: beta-glucosidase from thermotoga maritima in complex with2 noeuromycin

Phyre2

PDB 2rgm chain A

3D model

Region: 2 - 468
Aligned: 444
Modelled: 453
Confidence: 100.0%
Identity: 29%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: rice bglu1 beta-glucosidase, a plant exoglucanase/beta-glucosidase

Phyre2

PDB 3gno chain A

3D model

Region: 3 - 468
Aligned: 442
Modelled: 452
Confidence: 100.0%
Identity: 32%
PDB header:hydrolase
Chain: A: PDB Molecule:os03g0212800 protein;
PDBTitle: crystal structure of a rice os3bglu6 beta-glucosidase

Phyre2

PDB 1v08 chain A

3D model

Region: 1 - 468
Aligned: 448
Modelled: 451
Confidence: 100.0%
Identity: 30%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2

PDB 2z1s chain A

3D model

Region: 2 - 471
Aligned: 439
Modelled: 456
Confidence: 100.0%
Identity: 30%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase b;
PDBTitle: beta-glucosidase b from paenibacillus polymyxa complexed2 with cellotetraose

Phyre2

PDB 1e4m chain M

3D model

Region: 2 - 467
Aligned: 442
Modelled: 454
Confidence: 100.0%
Identity: 28%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2

PDB 3ai0 chain A

3D model

Region: 1 - 474
Aligned: 449
Modelled: 474
Confidence: 100.0%
Identity: 29%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of beta-glucosidase from termite neotermes2 koshunensis in complex with para-nitrophenyl-beta-d-glucopyranoside

Phyre2

PDB 3ptk chain B

3D model

Region: 2 - 468
Aligned: 445
Modelled: 463
Confidence: 100.0%
Identity: 30%
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase os4bglu12;
PDBTitle: the crystal structure of rice (oryza sativa l.) os4bglu12

Phyre2

PDB 3u57 chain A

3D model

Region: 1 - 468
Aligned: 448
Modelled: 468
Confidence: 100.0%
Identity: 29%
PDB header:hydrolase
Chain: A: PDB Molecule:raucaffricine-o-beta-d-glucosidase;
PDBTitle: structures of alkaloid biosynthetic glucosidases decode substrate2 specificity

Phyre2

PDB 1pbg chain A

3D model

Region: 1 - 472
Aligned: 442
Modelled: 454
Confidence: 100.0%
Identity: 36%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Family 1 of glycosyl hydrolase

Phyre2
1
c3pn8A_
2
d1qoxa_
3
c2xhyD_
4
c3qomA_
5
d2j78a1
6
c3fiyA_
7
d1e4ia_
8
c3ahxC_
9
d1gnxa_
10
c2dgaA_
11
c2j75A_
12
c2rgmA_
13
c3gnoA_
14
d1v08a_
15
c2z1sA_
16
d1e4mm_
17
c3ai0A_
18
c3ptkB_
19
c3u57A_
20
d1pbga_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3pn8A_
100.0 49 PDB header:hydrolase
Chain: A: PDB Molecule:putative phospho-beta-glucosidase;
PDBTitle: the crystal structure of 6-phospho-beta-glucosidase from streptococcus2 mutans ua159
2d1qoxa_
100.0 34 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
3c2xhyD_
100.0 54 PDB header:hydrolase
Chain: D: PDB Molecule:6-phospho-beta-glucosidase bgla;
PDBTitle: crystal structure of e.coli bgla
4c3qomA_
100.0 49 PDB header:hydrolase
Chain: A: PDB Molecule:6-phospho-beta-glucosidase;
PDBTitle: crystal structure of 6-phospho-beta-glucosidase from lactobacillus2 plantarum
5d2j78a1
100.0 33 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
6c3fiyA_
100.0 33 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of bglb
7d1e4ia_
100.0 33 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
8c3ahxC_
100.0 33 PDB header:hydrolase
Chain: C: PDB Molecule:beta-glucosidase a;
PDBTitle: crystal structure of beta-glucosidase a from bacterium clostridium2 cellulovorans
9d1gnxa_
100.0 32 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
10c2dgaA_
100.0 30 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of hexameric beta-glucosidase in wheat
11c2j75A_
100.0 32 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase a;
PDBTitle: beta-glucosidase from thermotoga maritima in complex with2 noeuromycin
12c2rgmA_
100.0 29 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: rice bglu1 beta-glucosidase, a plant exoglucanase/beta-glucosidase
13c3gnoA_
100.0 32 PDB header:hydrolase
Chain: A: PDB Molecule:os03g0212800 protein;
PDBTitle: crystal structure of a rice os3bglu6 beta-glucosidase
14d1v08a_
100.0 30 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
15c2z1sA_
100.0 30 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase b;
PDBTitle: beta-glucosidase b from paenibacillus polymyxa complexed2 with cellotetraose
16d1e4mm_
100.0 28 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
17c3ai0A_
100.0 29 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of beta-glucosidase from termite neotermes2 koshunensis in complex with para-nitrophenyl-beta-d-glucopyranoside
18c3ptkB_
100.0 30 PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase os4bglu12;
PDBTitle: the crystal structure of rice (oryza sativa l.) os4bglu12
19c3u57A_
100.0 29 PDB header:hydrolase
Chain: A: PDB Molecule:raucaffricine-o-beta-d-glucosidase;
PDBTitle: structures of alkaloid biosynthetic glucosidases decode substrate2 specificity
20d1pbga_
100.0 36 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
21c1v02F_
not modelled 100.0 30 PDB header:hydrolase
Chain: F: PDB Molecule:dhurrinase;
PDBTitle: crystal structure of the sorghum bicolor dhurrinase 1
22d1v02a_
not modelled 100.0 30 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
23c2jf7B_
not modelled 100.0 29 PDB header:hydrolase
Chain: B: PDB Molecule:strictosidine-o-beta-d-glucosidase;
PDBTitle: structure of strictosidine glucosidase
24c2e3zB_
not modelled 100.0 29 PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of intracellular family 1 beta-2 glucosidase bgl1a from the basidiomycete phanerochaete3 chrysosporium in substrate-free form
25d1cbga_
not modelled 100.0 31 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
26c3ahyD_
not modelled 100.0 30 PDB header:hydrolase
Chain: D: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of beta-glucosidase 2 from fungus trichoderma reesei2 in complex with tris
27c2zoxA_
not modelled 100.0 28 PDB header:hydrolase
Chain: A: PDB Molecule:cytosolic beta-glucosidase;
PDBTitle: crystal structure of the covalent intermediate of human cytosolic2 beta-glucosidase
28d1wcga1
not modelled 100.0 30 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
29d1uwsa_
not modelled 100.0 26 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
30d1qvba_
not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
31d1ug6a_
not modelled 100.0 31 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
32d1vffa1
not modelled 100.0 29 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
33c2cncA_
not modelled 100.0 12 PDB header:hydrolase
Chain: A: PDB Molecule:endoxylanase;
PDBTitle: family 10 xylanase
34c1xyzA_
not modelled 100.0 14 PDB header:glycosyltransferase
Chain: A: PDB Molecule:1,4-beta-d-xylan-xylanohydrolase;
PDBTitle: a common protein fold and similar active site in two2 distinct families of beta-glycanases
35d1xyza_
not modelled 100.0 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
36d1v6ya_
not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
37d1ur1a_
not modelled 100.0 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
38d1fh9a_
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
39d1nq6a_
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
40d1kwga2
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
41c3emzA_
not modelled 100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:endo-1,4-beta-xylanase;
PDBTitle: crystal structure of xylanase xynb from paenibacillus2 barcinonensis complexed with a conduramine derivative
42d1vbua1
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
43d1v0la_
not modelled 100.0 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
44d1v6wa2
not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
45c2jepB_
not modelled 100.0 15 PDB header:hydrolase
Chain: B: PDB Molecule:xyloglucanase;
PDBTitle: native family 5 xyloglucanase from paenibacillus pabuli
46d1n82a_
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
47d1w32a_
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
48c3ndyA_
not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase d;
PDBTitle: the structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans
49c2depA_
not modelled 100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:thermostable celloxylanase;
PDBTitle: crystal structure of xylanase b from clostridium2 stercorarium f9
50d1i1wa_
not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
51d1edga_
not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
52d1rh9a1
not modelled 99.9 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
53d1bg4a_
not modelled 99.9 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
54d1w91a2
not modelled 99.9 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
55c3aysA_
not modelled 99.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase;
PDBTitle: gh5 endoglucanase from a ruminal fungus in complex with cellotriose
56d1vjza_
not modelled 99.9 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
57d1hjsa_
not modelled 99.9 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
58d1hjqa_
not modelled 99.9 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
59d1ta3b_
not modelled 99.9 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
60c3ncoA_
not modelled 99.9 19 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase fncel5a;
PDBTitle: crystal structure of fncel5a from f. nodosum rt17-b1
61d1tuxa_
not modelled 99.9 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
62c3mmwB_
not modelled 99.9 15 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase;
PDBTitle: crystal structure of endoglucanase cel5a from the hyperthermophilic2 thermotoga maritima
63d1ceoa_
not modelled 99.9 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
64d1us3a2
not modelled 99.9 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
65c3pzqA_
not modelled 99.9 16 PDB header:hydrolase
Chain: A: PDB Molecule:mannan endo-1,4-beta-mannosidase. glycosyl hydrolase family
PDBTitle: structure of the hyperthermostable endo-1,4-beta-d-mannanase from2 thermotoga petrophila rku-1 with maltose and glycerol
66c2fglA_
not modelled 99.9 17 PDB header:hydrolase
Chain: A: PDB Molecule:alkaline thermostable endoxylanase;
PDBTitle: an alkali thermostable f/10 xylanase from alkalophilic2 bacillus sp. ng-27
67c1uz4A_
not modelled 99.9 16 PDB header:hydrolase
Chain: A: PDB Molecule:man5a;
PDBTitle: common inhibition of beta-glucosidase and beta-mannosidase2 by isofagomine lactam reflects different conformational3 intineraries for glucoside and mannoside hydrolysis
68d1uuqa_
not modelled 99.9 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
69d1r85a_
not modelled 99.8 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
70d1ur4a_
not modelled 99.8 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
71c3qr3B_
not modelled 99.8 13 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase eg-ii;
PDBTitle: crystal structure of cel5a (eg2) from hypocrea jecorina (trichoderma2 reesei)
72c3icgD_
not modelled 99.8 16 PDB header:hydrolase
Chain: D: PDB Molecule:endoglucanase d;
PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans
73d1foba_
not modelled 99.8 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
74d1h1na_
not modelled 99.8 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
75d1uhva2
not modelled 99.8 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
76c2oylB_
not modelled 99.8 17 PDB header:hydrolase
Chain: B: PDB Molecule:endoglycoceramidase ii;
PDBTitle: endo-glycoceramidase ii from rhodococcus sp.: cellobiose-like2 imidazole complex
77c2bs9B_
not modelled 99.8 18 PDB header:hydrolase
Chain: B: PDB Molecule:beta-xylosidase;
PDBTitle: native crystal structure of a gh39 beta-xylosidase xynb12 from geobacillus stearothermophilus
78c1kwgA_
not modelled 99.8 15 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of thermus thermophilus a4 beta-galactosidase
79c3l55B_
not modelled 99.7 14 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:b-1,4-endoglucanase/cellulase;
PDBTitle: crystal structure of a putative beta-1,4-endoglucanase /2 cellulase from prevotella bryantii
80c1uhvD_
not modelled 99.7 21 PDB header:hydrolase
Chain: D: PDB Molecule:beta-xylosidase;
PDBTitle: crystal structure of beta-d-xylosidase from2 thermoanaerobacterium saccharolyticum, a family 393 glycoside hydrolase
81d1ecea_
not modelled 99.7 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
82d1bhga3
not modelled 99.7 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
83c1bhgB_
not modelled 99.7 20 PDB header:glycosidase
Chain: B: PDB Molecule:beta-glucuronidase;
PDBTitle: human beta-glucuronidase at 2.6 a resolution
84c2zunB_
not modelled 99.7 14 PDB header:hydrolase
Chain: B: PDB Molecule:458aa long hypothetical endo-1,4-beta-glucanase;
PDBTitle: functional analysis of hyperthermophilic endocellulase from2 the archaeon pyrococcus horikoshii
85c1iszA_
not modelled 99.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:endo-1,4-beta-d-xylanase;
PDBTitle: crystal structure of xylanase from streptomyces2 olivaceoviridis e-86 complexed with galactose
86d2c0ha1
not modelled 99.7 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
87d2pb1a1
not modelled 99.6 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
88d1egza_
not modelled 99.6 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
89c3lpgA_
not modelled 99.6 16 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea
90c2w5fB_
not modelled 99.6 12 PDB header:hydrolase
Chain: B: PDB Molecule:endo-1,4-beta-xylanase y;
PDBTitle: high resolution crystallographic structure of the2 clostridium thermocellum n-terminal endo-1,4-beta-d-3 xylanase 10b (xyn10b) cbm22-1-gh10 modules complexed with4 xylohexaose
91c3civA_
not modelled 99.6 18 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-mannanase;
PDBTitle: crystal structure of the endo-beta-1,4-mannanase from2 alicyclobacillus acidocaldarius
92d1qnra_
not modelled 99.6 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
93c3jugA_
not modelled 99.5 22 PDB header:hydrolase
Chain: A: PDB Molecule:beta-mannanase;
PDBTitle: crystal structure of endo-beta-1,4-mannanase from the alkaliphilic2 bacillus sp. n16-5
94d1yq2a5
not modelled 99.5 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
95d1wkya2
not modelled 99.5 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
96c2cksB_
not modelled 99.5 14 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase e-5;
PDBTitle: x-ray crystal structure of the catalytic domain of2 thermobifida fusca endoglucanase cel5a (e5)
97d1tvna1
not modelled 99.5 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
98d7a3ha_
not modelled 99.5 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
99d1tg7a5
not modelled 99.5 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Glycosyl hydrolases family 35 catalytic domain
100c3cmgA_
not modelled 99.4 19 PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
101c3pzvB_
not modelled 99.4 18 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase;
PDBTitle: c2 crystal form of the endo-1,4-beta-glucanase from bacillus subtilis2 168
102d1h4pa_
not modelled 99.4 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
103d1g01a_
not modelled 99.4 9 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
104d1bqca_
not modelled 99.4 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
105d1jz8a5
not modelled 99.4 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
106c3fn9B_
not modelled 99.4 16 PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
107c1us2A_
not modelled 99.4 13 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-xylanase;
PDBTitle: xylanase10c (mutant e385a) from cellvibrio japonicus in2 complex with xylopentaose
108c1wkyA_
not modelled 99.2 13 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-mannanase;
PDBTitle: crystal structure of alkaline mannanase from bacillus sp. strain jamb-2 602: catalytic domain and its carbohydrate binding module
109c2y8kA_
not modelled 99.1 15 PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate binding family 6;
PDBTitle: structure of ctgh5-cbm6, an arabinoxylan-specific xylanase.
110c2w62A_
not modelled 99.0 16 PDB header:transferase
Chain: A: PDB Molecule:glycolipid-anchored surface protein 2;
PDBTitle: saccharomyces cerevisiae gas2p in complex with2 laminaripentaose
111c1j0yD_
not modelled 98.9 12 PDB header:hydrolase
Chain: D: PDB Molecule:beta-amylase;
PDBTitle: beta-amylase from bacillus cereus var. mycoides in complex2 with glucose
112c3gm8A_
not modelled 98.7 22 PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase;
PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus
113c3thdD_
not modelled 98.7 12 PDB header:hydrolase
Chain: D: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin
114d1vema2
not modelled 98.7 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
115c3u7vA_
not modelled 98.6 11 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: the structure of a putative beta-galactosidase from caulobacter2 crescentus cb15.
116c3clwF_
not modelled 98.5 14 PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:conserved exported protein;
PDBTitle: crystal structure of conserved exported protein from bacteroides2 fragilis
117c2wnwB_
not modelled 98.4 12 PDB header:hydrolase
Chain: B: PDB Molecule:activated by transcription factor ssrb;
PDBTitle: the crystal structure of srfj from salmonella typhimurium
118c1nofA_
not modelled 98.4 19 PDB header:hydrolase
Chain: A: PDB Molecule:xylanase;
PDBTitle: the first crystallographic structure of a xylanase from2 glycosyl hydrolase family 5: implications for catalysis
119d2je8a5
not modelled 98.3 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
120c2y2wC_
not modelled 98.3 19 PDB header:hydrolase
Chain: C: PDB Molecule:arabinofuranosidase;
PDBTitle: elucidation of the substrate specificity and protein2 structure of abfb, a family 51 alpha-l-arabinofuranosidase3 from bifidobacterium longum.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0