Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP75869
DateThu Jan 5 12:15:17 GMT 2012
Unique Job ID93eccfda05a188b2

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2od0a1
Top template information
Fold:Secretion chaperone-like
Superfamily:YgaC/TfoX-N like
Family:TfoX N-terminal domain-like
Confidence and coverage
Confidence:100.0% Coverage: 49%
102 residues ( 49% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
180 residues ( 86%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYC
Secondary structure 

















SS confidence 



























































Disorder  ?????






















































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   .........70.........80.........90.........100.........110.........120
Sequence  VKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLK
Secondary structure 

















SS confidence 



























































Disorder 










???


?































??????????
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   .........130.........140.........150.........160.........170.........180
Sequence  DLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAIIGIHE
Secondary structure 



















SS confidence 



























































Disorder  ????

































?




















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   .........190.........200.........
Sequence  AALPVARRQELAEWADSLTPKQEFPAELE
Secondary structure 











SS confidence 




























Disorder 
















????????????
Disorder confidence 




























 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2od0 chain A domain 1

3D model

Region: 6 - 107
Aligned: 102
Modelled: 102
Confidence: 100.0%
Identity: 32%
Fold: Secretion chaperone-like
Superfamily: YgaC/TfoX-N like
Family: TfoX N-terminal domain-like

Phyre2

PDB 3bqs chain B

3D model

Region: 118 - 198
Aligned: 81
Modelled: 81
Confidence: 100.0%
Identity: 37%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from2 listeria monocytogenes, trigonal form

Phyre2

PDB 2a1v chain A domain 1

3D model

Region: 8 - 125
Aligned: 112
Modelled: 118
Confidence: 96.4%
Identity: 14%
Fold: Secretion chaperone-like
Superfamily: YjbR-like
Family: YjbR-like

Phyre2

PDB 2fki chain A domain 1

3D model

Region: 9 - 122
Aligned: 109
Modelled: 114
Confidence: 96.2%
Identity: 18%
Fold: Secretion chaperone-like
Superfamily: YjbR-like
Family: YjbR-like

Phyre2

PDB 1t3n chain B

3D model

Region: 119 - 156
Aligned: 38
Modelled: 38
Confidence: 94.0%
Identity: 26%
PDB header:replication/dna
Chain: B: PDB Molecule:polymerase (dna directed) iota;
PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp

Phyre2

PDB 1pzn chain A domain 1

3D model

Region: 119 - 151
Aligned: 33
Modelled: 33
Confidence: 93.7%
Identity: 21%
Fold: SAM domain-like
Superfamily: Rad51 N-terminal domain-like
Family: DNA repair protein Rad51, N-terminal domain

Phyre2

PDB 2fll chain A

3D model

Region: 119 - 156
Aligned: 38
Modelled: 38
Confidence: 93.6%
Identity: 26%
PDB header:replication/dna
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: ternary complex of human dna polymerase iota with dna and dttp

Phyre2

PDB 3gqc chain B

3D model

Region: 119 - 156
Aligned: 38
Modelled: 38
Confidence: 92.3%
Identity: 21%
PDB header:transferase/dna
Chain: B: PDB Molecule:dna repair protein rev1;
PDBTitle: structure of human rev1-dna-dntp ternary complex

Phyre2

PDB 2oh2 chain B

3D model

Region: 119 - 177
Aligned: 54
Modelled: 59
Confidence: 92.1%
Identity: 17%
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase kappa;
PDBTitle: ternary complex of human dna polymerase

Phyre2

PDB 1k1q chain A

3D model

Region: 119 - 180
Aligned: 58
Modelled: 62
Confidence: 91.7%
Identity: 16%
PDB header:transcription
Chain: A: PDB Molecule:dbh protein;
PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus

Phyre2

PDB 2i1q chain A domain 1

3D model

Region: 119 - 151
Aligned: 33
Modelled: 33
Confidence: 91.5%
Identity: 24%
Fold: SAM domain-like
Superfamily: Rad51 N-terminal domain-like
Family: DNA repair protein Rad51, N-terminal domain

Phyre2

PDB 1t94 chain A domain 2

3D model

Region: 119 - 146
Aligned: 28
Modelled: 28
Confidence: 91.4%
Identity: 18%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: Lesion bypass DNA polymerase (Y-family), catalytic domain

Phyre2

PDB 2aq4 chain A

3D model

Region: 119 - 173
Aligned: 53
Modelled: 55
Confidence: 91.4%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:dna repair protein rev1;
PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp.

Phyre2

PDB 1zet chain A domain 2

3D model

Region: 119 - 156
Aligned: 38
Modelled: 38
Confidence: 91.0%
Identity: 26%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: Lesion bypass DNA polymerase (Y-family), catalytic domain

Phyre2

PDB 1jx4 chain A domain 2

3D model

Region: 119 - 156
Aligned: 38
Modelled: 36
Confidence: 91.0%
Identity: 13%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: Lesion bypass DNA polymerase (Y-family), catalytic domain

Phyre2

PDB 1s97 chain D

3D model

Region: 119 - 156
Aligned: 38
Modelled: 38
Confidence: 90.8%
Identity: 13%
PDB header:transferase/dna
Chain: D: PDB Molecule:dna polymerase iv;
PDBTitle: dpo4 with gt mismatch

Phyre2

PDB 1gm5 chain A domain 2

3D model

Region: 119 - 144
Aligned: 26
Modelled: 26
Confidence: 90.5%
Identity: 19%
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Family: RecG "wedge" domain

Phyre2

PDB 1t94 chain B

3D model

Region: 119 - 147
Aligned: 29
Modelled: 29
Confidence: 90.4%
Identity: 17%
PDB header:replication
Chain: B: PDB Molecule:polymerase (dna directed) kappa;
PDBTitle: crystal structure of the catalytic core of human dna2 polymerase kappa

Phyre2

PDB 1k1s chain A domain 2

3D model

Region: 119 - 156
Aligned: 38
Modelled: 38
Confidence: 90.3%
Identity: 18%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: Lesion bypass DNA polymerase (Y-family), catalytic domain

Phyre2

PDB 1wcn chain A

3D model

Region: 113 - 151
Aligned: 39
Modelled: 39
Confidence: 89.9%
Identity: 18%
PDB header:rna-binding protein
Chain: A: PDB Molecule:transcription elongation protein nusa;
PDBTitle: nmr structure of the carboxyterminal domains of escherichia2 coli nusa

Phyre2
1

d2od0a1
2

c3bqsB_
3

d2a1va1
4

d2fkia1
5

c1t3nB_
6

d1pzna1
7

c2fllA_
8

c3gqcB_
9

c2oh2B_
10

c1k1qA_
11

d2i1qa1
12

d1t94a2
13

c2aq4A_
14

d1zeta2
15

d1jx4a2
16

c1s97D_
17

d1gm5a2
18

c1t94B_
19

d1k1sa2
20

c1wcnA_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2od0a1



100.0 32 Fold:Secretion chaperone-like
Superfamily:YgaC/TfoX-N like
Family:TfoX N-terminal domain-like
2c3bqsB_



100.0 37 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from2 listeria monocytogenes, trigonal form
3d2a1va1



96.4 14 Fold:Secretion chaperone-like
Superfamily:YjbR-like
Family:YjbR-like
4d2fkia1



96.2 18 Fold:Secretion chaperone-like
Superfamily:YjbR-like
Family:YjbR-like
5c1t3nB_



94.0 26 PDB header:replication/dna
Chain: B: PDB Molecule:polymerase (dna directed) iota;
PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp
6d1pzna1



93.7 21 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
7c2fllA_



93.6 26 PDB header:replication/dna
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: ternary complex of human dna polymerase iota with dna and dttp
8c3gqcB_



92.3 21 PDB header:transferase/dna
Chain: B: PDB Molecule:dna repair protein rev1;
PDBTitle: structure of human rev1-dna-dntp ternary complex
9c2oh2B_



92.1 17 PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase kappa;
PDBTitle: ternary complex of human dna polymerase
10c1k1qA_



91.7 16 PDB header:transcription
Chain: A: PDB Molecule:dbh protein;
PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus
11d2i1qa1



91.5 24 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
12d1t94a2



91.4 18 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
13c2aq4A_



91.4 23 PDB header:transferase
Chain: A: PDB Molecule:dna repair protein rev1;
PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp.
14d1zeta2



91.0 26 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
15d1jx4a2



91.0 13 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
16c1s97D_



90.8 13 PDB header:transferase/dna
Chain: D: PDB Molecule:dna polymerase iv;
PDBTitle: dpo4 with gt mismatch
17d1gm5a2



90.5 19 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:RecG "wedge" domain
18c1t94B_



90.4 17 PDB header:replication
Chain: B: PDB Molecule:polymerase (dna directed) kappa;
PDBTitle: crystal structure of the catalytic core of human dna2 polymerase kappa
19d1k1sa2



90.3 18 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
20c1wcnA_



89.9 18 PDB header:rna-binding protein
Chain: A: PDB Molecule:transcription elongation protein nusa;
PDBTitle: nmr structure of the carboxyterminal domains of escherichia2 coli nusa
21c8iczA_



not modelled 88.9 15 PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7));
PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar)
22c3mr2A_



not modelled 87.9 11 PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase eta;
PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm)
23d1lb2b_



not modelled 87.7 16 Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
24d1z3eb1



not modelled 86.4 22 Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
25c2bcuA_



not modelled 86.4 7 PDB header:transferase, lyase/dna
Chain: A: PDB Molecule:dna polymerase lambda;
PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch
26c2w9mB_



not modelled 86.3 15 PDB header:dna replication
Chain: B: PDB Molecule:polymerase x;
PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
27d1doqa_



not modelled 86.3 41 Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
28c1kdhA_



not modelled 85.5 5 PDB header:transferase/dna
Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short
PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna
29d1im4a_



not modelled 85.2 28 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
30c1nomA_



not modelled 84.4 25 PDB header:nucleotidyltransferase
Chain: A: PDB Molecule:dna polymerase beta;
PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar)
31d1cooa_



not modelled 83.6 16 Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
32d1szpa1



not modelled 83.5 17 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
33d2p6ra2



not modelled 83.3 14 Fold:Sec63 N-terminal domain-like
Superfamily:Sec63 N-terminal domain-like
Family:Achaeal helicase C-terminal domain
34c2ihmA_



not modelled 82.6 11 PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide
35c1gm5A_



not modelled 80.6 18 PDB header:helicase
Chain: A: PDB Molecule:recg;
PDBTitle: structure of recg bound to three-way dna junction
36c1t4gA_



not modelled 78.1 24 PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: atpase in complex with amp-pnp
37d1lmb3_



not modelled 75.0 13 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
38c2va8A_



not modelled 74.2 19 PDB header:hydrolase
Chain: A: PDB Molecule:ski2-type helicase;
PDBTitle: dna repair helicase hel308
39c1jihA_



not modelled 74.0 21 PDB header:translation
Chain: A: PDB Molecule:dna polymerase eta;
PDBTitle: yeast dna polymerase eta
40d1szpb1



not modelled 73.5 18 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
41d2q0zx1



not modelled 72.2 18 Fold:Sec63 N-terminal domain-like
Superfamily:Sec63 N-terminal domain-like
Family:Sec63 N-terminal domain
42c2r8kB_



not modelled 68.3 21 PDB header:replication, transferase/dna
Chain: B: PDB Molecule:dna polymerase eta;
PDBTitle: structure of the eukaryotic dna polymerase eta in complex with 1,2-2 d(gpg)-cisplatin containing dna
43d1jmsa3



not modelled 67.6 4 Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
44d1b22a_



not modelled 66.0 21 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
45c1b22A_



not modelled 66.0 21 PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: rad51 (n-terminal domain)
46d2bcqa2



not modelled 59.5 8 Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
47c3h9xB_



not modelled 58.5 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein pspto_3016;
PDBTitle: crystal structure of the pspto_3016 protein from2 pseudomonas syringae, northeast structural genomics3 consortium target psr293
48d2fmpa2



not modelled 58.3 19 Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
49c2p6uA_



not modelled 56.6 14 PDB header:dna binding protein
Chain: A: PDB Molecule:afuhel308 helicase;
PDBTitle: apo structure of the hel308 superfamily 2 helicase
50d2vana1



not modelled 53.3 23 Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
51c2dflA_



not modelled 51.3 24 PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: crystal structure of left-handed rada filament
52c3iwcD_



not modelled 46.4 18 PDB header:lyase
Chain: D: PDB Molecule:s-adenosylmethionine decarboxylase;
PDBTitle: t. maritima adometdc complex with s-adenosylmethionine2 methyl ester
53d1jiha2



not modelled 45.5 21 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
54c2kz3A_



not modelled 40.5 18 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein rad51l3;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83
55c3im2A_



not modelled 39.9 7 PDB header:hydrolase
Chain: A: PDB Molecule:pre-mrna-splicing helicase brr2;
PDBTitle: structure of the c-terminal sec63 unit of yeast brr2, p41212 form
56d1ci4a_



not modelled 37.5 19 Fold:SAM domain-like
Superfamily:Barrier-to-autointegration factor, BAF
Family:Barrier-to-autointegration factor, BAF
57d1kfta_



not modelled 32.8 12 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Excinuclease UvrC C-terminal domain
58c1kftA_



not modelled 32.8 12 PDB header:dna binding protein
Chain: A: PDB Molecule:excinuclease abc subunit c;
PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli
59c1zg2A_



not modelled 26.2 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0213 protein bh0048;
PDBTitle: solution nmr structure of the upf0213 protein bh0048 from2 bacillus halodurans. northeast structural genomics target3 bhr2.
60c3f42A_



not modelled 25.2 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein hp0035;
PDBTitle: crystal structure of uncharacterized protein hp0035 from helicobacter2 pylori
61d1iufa1



not modelled 24.3 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
62d1wf1a_



not modelled 20.9 13 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
63c2iiiA_



not modelled 19.4 18 PDB header:lyase
Chain: A: PDB Molecule:s-adenosylmethionine decarboxylase proenzyme;
PDBTitle: crystal structure of the adenosylmethionine decarboxylase (aq_254)2 from aquifex aeolicus vf5
64d3bzka1



not modelled 18.4 14 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Tex HhH-containing domain-like
65d2axtu1



not modelled 17.6 6 Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:PsbU-like
66c1s5lu_



not modelled 17.6 9 PDB header:photosynthesis
Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
67d1pugb_



not modelled 17.2 17 Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
68c1vr7A_



not modelled 16.3 18 PDB header:lyase
Chain: A: PDB Molecule:s-adenosylmethionine decarboxylase proenzyme;
PDBTitle: crystal structure of s-adenosylmethionine decarboxylase proenzyme2 (tm0655) from thermotoga maritima at 1.2 a resolution
69d1dgsa1



not modelled 16.0 23 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:NAD+-dependent DNA ligase, domain 3
70d1vr7a1



not modelled 15.9 18 Fold:S-adenosylmethionine decarboxylase
Superfamily:S-adenosylmethionine decarboxylase
Family:Bacterial S-adenosylmethionine decarboxylase
71d1nzpa_



not modelled 15.7 8 Fold:SAM domain-like
Superfamily:DNA polymerase beta, N-terminal domain-like
Family:DNA polymerase beta, N-terminal domain-like
72c1ixrA_



not modelled 15.6 14 PDB header:hydrolase
Chain: A: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex
73c2qguA_



not modelled 14.6 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable signal peptide protein;
PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89
74c1vddC_



not modelled 14.6 25 PDB header:recombination
Chain: C: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombinational repair protein recr
75c2kp7A_



not modelled 14.5 29 PDB header:hydrolase
Chain: A: PDB Molecule:crossover junction endonuclease mus81;
PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a
76d1wyua1



not modelled 14.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
77d2edua1



not modelled 13.8 8 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:ComEA-like
78d1us7b_



not modelled 13.7 7 Fold:Hsp90 co-chaperone CDC37
Superfamily:Hsp90 co-chaperone CDC37
Family:Hsp90 co-chaperone CDC37
79c1us7B_



not modelled 13.7 7 PDB header:chaperone
Chain: B: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: complex of hsp90 and p50
80d1j3xa_



not modelled 13.3 8 Fold:HMG-box
Superfamily:HMG-box
Family:HMG-box
81c1j3xA_



not modelled 13.3 8 PDB header:dna binding protein
Chain: A: PDB Molecule:high mobility group protein 2;
PDBTitle: solution structure of the n-terminal domain of the hmgb2
82c2csdB_



not modelled 13.1 14 PDB header:isomerase
Chain: B: PDB Molecule:topoisomerase v;
PDBTitle: crystal structure of topoisomerase v (61 kda fragment)
83d1vdda_



not modelled 13.1 25 Fold:Recombination protein RecR
Superfamily:Recombination protein RecR
Family:Recombination protein RecR
84d2bcqa1



not modelled 12.9 8 Fold:SAM domain-like
Superfamily:DNA polymerase beta, N-terminal domain-like
Family:DNA polymerase beta, N-terminal domain-like
85c2hldH_



not modelled 12.3 8 PDB header:hydrolase
Chain: H: PDB Molecule:atp synthase delta chain, mitochondrial;
PDBTitle: crystal structure of yeast mitochondrial f1-atpase
86d1hlwa_



not modelled 11.9 11 Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
87d1k44a_



not modelled 11.8 21 Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
88c3bs7A_



not modelled 11.8 11 PDB header:signaling protein
Chain: A: PDB Molecule:protein aveugle;
PDBTitle: crystal structure of the sterile alpha motif (sam) domain2 of hyphen/aveugle
89d1ep3a_



not modelled 11.3 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
90d1i11a_



not modelled 11.3 18 Fold:HMG-box
Superfamily:HMG-box
Family:HMG-box
91d2a1jb1



not modelled 10.9 16 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
92d1iyka2



not modelled 10.7 20 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-myristoyl transferase, NMT
93c1xbsA_



not modelled 10.3 13 PDB header:transcription, cell cycle
Chain: A: PDB Molecule:dim1-like protein;
PDBTitle: crystal structure of human dim2: a dim1-like protein
94c1fi4A_



not modelled 10.0 43 PDB header:lyase
Chain: A: PDB Molecule:mevalonate 5-diphosphate decarboxylase;
PDBTitle: the x-ray crystal structure of mevalonate 5-diphosphate decarboxylase2 at 2.3 angstrom resolution.
95c2w0gA_



not modelled 9.7 7 PDB header:chaperone
Chain: A: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: hsp90 co-chaperone cdc37
96d1jmsa1



not modelled 9.6 10 Fold:SAM domain-like
Superfamily:DNA polymerase beta, N-terminal domain-like
Family:DNA polymerase beta, N-terminal domain-like
97d1ej5a_



not modelled 9.5 23 Fold:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
Superfamily:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
Family:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
98c2q0zX_



not modelled 9.3 18 PDB header:protein transport
Chain: X: PDB Molecule:protein pro2281;
PDBTitle: crystal structure of q9p172/sec63 from homo sapiens.2 northeast structural genomics target hr1979.
99c3r9lA_



not modelled 9.0 19 PDB header:transferase
Chain: A: PDB Molecule:nucleoside diphosphate kinase;
PDBTitle: crystal structure of nucleoside diphosphate kinase from giardia2 lamblia featuring a disordered dinucleotide binding site

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0