Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP52102
DateThu Jan 5 12:05:20 GMT 2012
Unique Job ID936866c364eb1012

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2zvsB_
Top template information
PDB header:electron transport
Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl;
PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli
Confidence and coverage
Confidence: 99.9% Coverage: 93%
80 residues ( 93% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MALLITKKCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGHYETPTCQKVCPIPNTI
Secondary structure 



































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Disorder  ??


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Disorder confidence 



























































 
   .........70.........80......
Sequence  VKDPAHVETEEQLWDKFVLMHHADKI
Secondary structure 













SS confidence 

























Disorder 



???
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???????
Disorder confidence 

























 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2zvs chain B

3D model

Region: 2 - 81
Aligned: 80
Modelled: 80
Confidence: 99.9%
Identity: 100%
PDB header:electron transport
Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl;
PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli

Phyre2

PDB 1blu chain A

3D model

Region: 2 - 81
Aligned: 79
Modelled: 80
Confidence: 99.8%
Identity: 59%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Short-chain ferredoxins

Phyre2

PDB 1rgv chain A

3D model

Region: 2 - 81
Aligned: 79
Modelled: 80
Confidence: 99.8%
Identity: 47%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Short-chain ferredoxins

Phyre2

PDB 2fgo chain A

3D model

Region: 2 - 81
Aligned: 79
Modelled: 80
Confidence: 99.8%
Identity: 54%
PDB header:electron transport
Chain: A: PDB Molecule:ferredoxin;
PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa

Phyre2

PDB 7fd1 chain A

3D model

Region: 2 - 86
Aligned: 79
Modelled: 85
Confidence: 99.7%
Identity: 25%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: 7-Fe ferredoxin

Phyre2

PDB 1bc6 chain A

3D model

Region: 2 - 83
Aligned: 75
Modelled: 82
Confidence: 99.7%
Identity: 29%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: 7-Fe ferredoxin

Phyre2

PDB 2vpy chain B

3D model

Region: 3 - 77
Aligned: 75
Modelled: 75
Confidence: 99.7%
Identity: 25%
PDB header:oxidoreductase
Chain: B: PDB Molecule:nrfc protein;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)

Phyre2

PDB 1ti2 chain F

3D model

Region: 3 - 84
Aligned: 80
Modelled: 82
Confidence: 99.7%
Identity: 14%
PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici

Phyre2

PDB 2ivf chain B

3D model

Region: 3 - 74
Aligned: 72
Modelled: 72
Confidence: 99.6%
Identity: 15%
PDB header:oxidoreductase
Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum

Phyre2

PDB 1kqf chain B

3D model

Region: 3 - 84
Aligned: 82
Modelled: 82
Confidence: 99.6%
Identity: 20%
PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli

Phyre2

PDB 1fca chain A

3D model

Region: 2 - 60
Aligned: 53
Modelled: 59
Confidence: 99.6%
Identity: 45%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Short-chain ferredoxins

Phyre2

PDB 1h98 chain A

3D model

Region: 2 - 79
Aligned: 72
Modelled: 78
Confidence: 99.6%
Identity: 22%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: 7-Fe ferredoxin

Phyre2

PDB 2v2k chain B

3D model

Region: 2 - 82
Aligned: 74
Modelled: 81
Confidence: 99.6%
Identity: 23%
PDB header:electron transport
Chain: B: PDB Molecule:ferredoxin;
PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis

Phyre2

PDB 1clf chain A

3D model

Region: 2 - 62
Aligned: 55
Modelled: 61
Confidence: 99.6%
Identity: 40%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Short-chain ferredoxins

Phyre2

PDB 2fdn chain A

3D model

Region: 2 - 61
Aligned: 54
Modelled: 60
Confidence: 99.6%
Identity: 46%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Short-chain ferredoxins

Phyre2

PDB 2fug chain G

3D model

Region: 6 - 86
Aligned: 71
Modelled: 81
Confidence: 99.6%
Identity: 28%
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus

Phyre2

PDB 1gth chain D

3D model

Region: 2 - 69
Aligned: 62
Modelled: 68
Confidence: 99.6%
Identity: 31%
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil

Phyre2

PDB 2fug chain 9 domain 1

3D model

Region: 6 - 86
Aligned: 71
Modelled: 81
Confidence: 99.6%
Identity: 28%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1h0h chain B

3D model

Region: 3 - 84
Aligned: 82
Modelled: 82
Confidence: 99.5%
Identity: 17%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1kqf chain B domain 1

3D model

Region: 3 - 84
Aligned: 82
Modelled: 82
Confidence: 99.5%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2
1

c2zvsB_
2

d1blua_
3

d1rgva_
4

c2fgoA_
5

d7fd1a_
6

d1bc6a_
7

c2vpyB_
8

c1ti2F_
9

c2ivfB_
10

c1kqfB_
11

d1fcaa_
12

d1h98a_
13

c2v2kB_
14

d1clfa_
15

d2fdna_
16

c2fugG_
17

c1gthD_
18

d2fug91
19

d1h0hb_
20

d1kqfb1
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2zvsB_



99.9 100 PDB header:electron transport
Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl;
PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli
2d1blua_



99.8 59 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
3d1rgva_



99.8 47 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
4c2fgoA_



99.8 54 PDB header:electron transport
Chain: A: PDB Molecule:ferredoxin;
PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa
5d7fd1a_



99.7 25 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
6d1bc6a_



99.7 29 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
7c2vpyB_



99.7 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:nrfc protein;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
8c1ti2F_



99.7 14 PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici
9c2ivfB_



99.6 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
10c1kqfB_



99.6 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli
11d1fcaa_



99.6 45 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
12d1h98a_



99.6 22 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
13c2v2kB_



99.6 23 PDB header:electron transport
Chain: B: PDB Molecule:ferredoxin;
PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis
14d1clfa_



99.6 40 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
15d2fdna_



99.6 46 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
16c2fugG_



99.6 28 PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
17c1gthD_



99.6 31 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
18d2fug91



99.6 28 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
19d1h0hb_



99.5 17 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
20d1kqfb1



99.5 20 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
21d1dura_



not modelled 99.5 40 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
22d1vlfn2



not modelled 99.5 10 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
23d1jb0c_



not modelled 99.5 25 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
24d1jnrb_



not modelled 99.4 31 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
25c3gyxJ_



not modelled 99.4 25 PDB header:oxidoreductase
Chain: J: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
26c2gmhA_



not modelled 99.4 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone
27d1gtea5



not modelled 99.4 27 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
28d1hfel2



not modelled 99.4 28 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
29c1gx7A_



not modelled 99.4 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit;
PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase
30d1xera_



not modelled 99.3 30 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Archaeal ferredoxins
31c2c3yA_



not modelled 99.3 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus
32d1y5ib1



not modelled 99.3 17 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
33d2c42a5



not modelled 99.2 20 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
34c1hfeL_



not modelled 99.2 28 PDB header:hydrogenase
Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1)
PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans
35d3c8ya3



not modelled 99.1 22 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
36d2gmha3



not modelled 99.1 25 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:ETF-QO domain-like
37d1vjwa_



not modelled 99.1 22 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
38d2fug34



not modelled 99.0 17 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
39d1iqza_



not modelled 99.0 19 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
40d3c7bb1



not modelled 98.9 20 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
41d1sj1a_



not modelled 98.8 11 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
42c3c7bE_



not modelled 98.8 23 PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
43c1c4cA_



not modelled 98.8 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
44c1dwlA_



not modelled 98.8 19 PDB header:electron transfer
Chain: A: PDB Molecule:ferredoxin i;
PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation
45c3c7bA_



not modelled 98.7 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
46c2v4jE_



not modelled 98.7 20 PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
47c2v4jA_



not modelled 98.7 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
48d1fxra_



not modelled 98.5 18 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
49c2fugC_



not modelled 98.4 14 PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
50c3bk7A_



not modelled 98.2 32 PDB header:hydrolyase/translation
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii
51d2bs2b1



not modelled 97.2 27 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
52d1kf6b1



not modelled 97.0 33 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
53c1nekB_



not modelled 96.9 29 PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound
54d1nekb1



not modelled 96.9 30 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
55c2b76N_



not modelled 96.8 25 PDB header:oxidoreductase
Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein;
PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
56c2bs2E_



not modelled 96.7 31 PDB header:oxidoreductase
Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b;
PDBTitle: quinol:fumarate reductase from wolinella succinogenes
57d3c7ba1



not modelled 96.7 24 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
58d2v4ja1



not modelled 96.6 19 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
59d2v4jb1



not modelled 96.5 26 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
60c2h89B_



not modelled 96.2 24 PDB header:oxidoreductase
Chain: B: PDB Molecule:succinate dehydrogenase ip subunit;
PDBTitle: avian respiratory complex ii with malonate bound
61c3cf4A_



not modelled 96.2 33 PDB header:oxidoreductase
Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit;
PDBTitle: structure of the codh component of the m. barkeri acds complex
62d1fxda_



not modelled 90.7 28 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
63c2vdcI_



not modelled 68.9 29 PDB header:oxidoreductase
Chain: I: PDB Molecule:glutamate synthase [nadph] small chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.
64d1g8ka2



not modelled 20.7 17 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
65c1igrA_



not modelled 17.2 23 PDB header:hormone receptor
Chain: A: PDB Molecule:insulin-like growth factor receptor 1;
PDBTitle: type 1 insulin-like growth factor receptor (domains 1-3)
66d1gtea1



not modelled 10.8 33 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Dihydropyrimidine dehydrogenase, N-terminal domain
67c1g8jC_



not modelled 8.2 14 PDB header:oxidoreductase
Chain: C: PDB Molecule:arsenite oxidase;
PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis
68c3ag7A_



not modelled 8.2 15 PDB header:plant protein
Chain: A: PDB Molecule:putative uncharacterized protein f9e10.5;
PDBTitle: an auxilin-like j-domain containing protein, jac1 j-domain
69c2npbA_



not modelled 7.5 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:selenoprotein w;
PDBTitle: nmr solution structure of mouse selw
70d2apob1



not modelled 7.5 17 Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
71d1nz6a_



not modelled 7.0 26 Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain
72d2ey4e1



not modelled 7.0 17 Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
73c1eu1A_



not modelled 6.9 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:dimethyl sulfoxide reductase;
PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments.
74c2a91A_



not modelled 6.7 18 PDB header:signaling protein,transferase,membrane p
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: crystal structure of erbb2 domains 1-3
75d1kbsa_



not modelled 6.7 42 Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Snake venom toxins
76d2vgna1



not modelled 6.4 20 Fold:Sm-like fold
Superfamily:Dom34/Pelota N-terminal domain-like
Family:Dom34/Pelota N-terminal domain-like
77d1cdta_



not modelled 6.0 42 Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Snake venom toxins
78d2cdxa_



not modelled 5.5 42 Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Snake venom toxins

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0