Email l.a.kelley@imperial.ac.uk Description P0AFG0 Date Thu Jan 5 11:26:08 GMT 2012 Unique Job ID 9040530b4566a8b7

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1m1gB_ 100.0 42 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 2 c2xhcA_ 100.0 53 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 3 c2ougC_ 100.0 18 PDB header:transcription Chain: C: PDB Molecule:transcriptional activator rfah; PDBTitle: crystal structure of the rfah transcription factor at 2.1a2 resolution 4 c2k06A_ 100.0 100 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of the aminoterminal domain of e. coli2 nusg 5 c3p8bB_ 100.0 20 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 6 d1nz8a_ 99.9 39 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 7 d1m1ha2 99.9 31 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 8 d1nz9a_ 99.6 62 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 9 c2jvvA_ 99.6 100 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 10 c2kvqG_ 99.6 100 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 11 d1nppa2 99.5 63 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 12 c3ewgA_ 98.3 23 PDB header:transcription Chain: A: PDB Molecule:putative transcription antitermination protein nusg; PDBTitle: crystal structure of the n-terminal domain of nusg (ngn) from2 methanocaldococcus jannaschii 13 c2exuA_ 98.3 13 PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain 14 c3h7hB_ 98.2 16 PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt5; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 15 c2e6zA_ 97.0 20 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 16 d1vqot1 96.9 33 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 17 c4a1cS_ 96.8 22 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 18 c3iz5Y_ 96.7 19 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 19 c2zkrt_ 96.7 19 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 20 c2ckkA_ 96.6 13 PDB header:nuclear protein Chain: A: PDB Molecule:kin17; PDBTitle: high resolution crystal structure of the human kin172 c-terminal domain containing a kow motif3 kin17. 21 c2e70A_ not modelled 96.4 27 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 22 d2zjrr1 not modelled 96.4 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 23 d2do3a1 not modelled 96.3 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 24 c1s1iU_ not modelled 94.8 21 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l26-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 25 d2gycs1 not modelled 94.4 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 26 c3bboW_ not modelled 93.9 18 PDB header:ribosome Chain: W: PDB Molecule:ribosomal protein l24; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 27 d1ib8a1 not modelled 93.1 24 Fold:Sm-like fold Superfamily:YhbC-like, C-terminal domain Family:YhbC-like, C-terminal domain 28 d2j01y1 not modelled 92.7 30 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 29 c2ftcN_ not modelled 89.8 27 PDB header:ribosome Chain: N: PDB Molecule:mitochondrial ribosomal protein l24; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 30 c2jz2A_ not modelled 85.7 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ssl0352 protein; PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42 31 c3iz5N_ not modelled 76.7 27 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 32 c4a19F_ not modelled 74.6 18 PDB header:ribosome Chain: F: PDB Molecule:rpl14; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2. 33 d2joya1 not modelled 70.3 17 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L14e 34 c4a18N_ not modelled 70.1 21 PDB header:ribosome Chain: N: PDB Molecule:rpl27; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1 35 c3izcN_ not modelled 66.8 17 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 36 c3kbgA_ not modelled 64.4 13 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 37 d1vqoq1 not modelled 57.3 26 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 38 c2xzmW_ not modelled 51.4 15 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 39 c3iz6D_ not modelled 51.2 23 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 40 d1nxza1 not modelled 45.3 15 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 41 d2vv5a1 not modelled 44.4 32 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 42 d1vhka1 not modelled 43.0 11 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 43 c1ib8A_ not modelled 39.7 24 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:conserved protein sp14.3; PDBTitle: solution structure and function of a conserved protein2 sp14.3 encoded by an essential streptococcus pneumoniae3 gene 44 d2pu9b1 not modelled 36.1 33 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain 45 c2pmzV_ not modelled 35.1 17 PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 46 c3qz9D_ not modelled 31.2 16 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 47 c2eqmA_ not modelled 29.0 23 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens] 48 c3izbD_ not modelled 26.8 18 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 49 c3kw2A_ not modelled 25.1 24 PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis 50 d1psea_ not modelled 23.6 22 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 51 d2coya1 not modelled 22.6 14 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 52 d1a8pa1 not modelled 22.5 21 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 53 d2hqha1 not modelled 22.3 16 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 54 d1qp3a_ not modelled 21.7 24 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 55 d1ixda_ not modelled 21.4 14 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 56 c3izca_ not modelled 20.3 23 PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein rpl1 (l1p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 57 c2dxcG_ not modelled 19.7 30 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 58 c3q1jA_ not modelled 19.2 21 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 1 of human phd finger protein 20 59 d1h3ga1 not modelled 18.9 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 60 c2eqjA_ not modelled 17.8 17 PDB header:transcription Chain: A: PDB Molecule:metal-response element-binding transcription PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2 61 d1ugpb_ not modelled 17.8 12 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 62 c2y35A_ not modelled 17.8 18 PDB header:hydrolase/dna Chain: A: PDB Molecule:ld22664p; PDBTitle: crystal structure of xrn1-substrate complex 63 c3iz5a_ not modelled 17.5 33 PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein l1 (l1p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 64 d2cowa1 not modelled 17.5 17 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 65 c3cgnA_ not modelled 17.2 16 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 66 d2zjrm1 not modelled 17.0 25 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 67 d1dzfa2 not modelled 15.8 19 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 68 c2kr7A_ not modelled 15.5 9 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 69 d1v29b_ not modelled 15.4 15 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 70 c3pifD_ not modelled 15.2 20 PDB header:hydrolase Chain: D: PDB Molecule:5'->3' exoribonuclease (xrn1); PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese 71 c2zkrq_ not modelled 15.1 13 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 72 c3izcG_ not modelled 14.3 19 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein rpl6 (l6e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 73 d1eika_ not modelled 13.2 14 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 74 d2zgwa1 not modelled 12.8 38 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Biotin repressor (BirA) 75 d1efca1 not modelled 12.6 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 76 c2kfwA_ not modelled 12.1 12 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 77 d2gycn1 not modelled 11.8 31 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 78 c2k8iA_ not modelled 11.4 11 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 79 d1gxie_ not modelled 11.4 22 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 80 c1nwxN_ not modelled 11.1 30 PDB header:ribosome Chain: N: PDB Molecule:ribosomal protein l19; PDBTitle: complex of the large ribosomal subunit from deinococcus2 radiodurans with abt-773 81 d2j01t1 not modelled 10.9 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 82 c3izcU_ not modelled 10.7 17 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 83 d1gawa1 not modelled 10.7 38 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 84 c2vv5D_ not modelled 10.6 20 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 85 d1fr3a_ not modelled 10.4 14 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 86 c1z85B_ not modelled 10.2 11 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution 87 c2k5hA_ not modelled 10.1 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 88 c2e5pA_ not modelled 10.1 16 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 1 (phf1 protein) 89 d2ahob2 not modelled 9.8 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 90 d1jb0e_ not modelled 9.0 22 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 91 d1wjqa_ not modelled 8.6 23 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 92 d1whka_ not modelled 8.5 9 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 93 c2k52A_ not modelled 8.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 94 d1fdra1 not modelled 8.2 29 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 95 c2khjA_ not modelled 8.2 17 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 96 d1hmja_ not modelled 8.1 24 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 97 d1fnda1 not modelled 8.0 38 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 98 d1mhna_ not modelled 7.9 15 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 99 c2vc8A_ not modelled 7.7 20 PDB header:protein-binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of the lsm domain of human edc3 (enhancer2 of decapping 3)