Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	S	L	S	K	E	A	A	L	V	H	E	A	L	V	A	R	G	L	E	T	P	L	R	P	P	V	H	E	M	D	N	E	T	R	K	S	L	I	A	G	H	M	T	E	I	M	Q	L	L	N	L	D	L	A	D	D	S	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?										?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	E	T	P	H	R	I	A	K	M	Y	V	D	E	I	F	S	G	L	D	Y	A	N	F	P	K	I	T	L	I	E	N	K	M	K	V	D	E	M	V	T	V	R	D	I	T	L	T	S	T	C	E	H	H	F	V	T	I	D	G
Secondary structure
SS confidence
Disorder																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	A	T	V	A	Y	I	P	K	D	S	V	I	G	L	S	K	I	N	R	I	V	Q	F	F	A	Q	R	P	Q	V	Q	E	R	L	T	Q	Q	I	L	I	A	L	Q	T	L	L	G	T	N	N	V	A	V	S	I	D	A	V	H
Secondary structure
SS confidence
Disorder															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Sequence		Y	C	V	K	A	R	G	I	R	D	A	T	S	A	T	T	T	T	S	L	G	G	L	F	K	S	S	Q	N	T	R	H	E	F	L	R	A	V	R	H	H	N
Secondary structure
SS confidence
Disorder											?	?																											?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1a8r chain A Region: 2 - 222 Aligned: 221 Modelled: 221 Confidence: 100.0% Identity: 100% Fold: T-fold Superfamily: Tetrahydrobiopterin biosynthesis enzymes-like Family: GTP cyclohydrolase I Phyre2 PDB 1wpl chain A Region: 26 - 220 Aligned: 194 Modelled: 195 Confidence: 100.0% Identity: 36% Fold: T-fold Superfamily: Tetrahydrobiopterin biosynthesis enzymes-like Family: GTP cyclohydrolase I Phyre2 PDB 1is7 chain F Region: 26 - 220 Aligned: 194 Modelled: 195 Confidence: 100.0% Identity: 36% PDB header:hydrolase/protein binding Chain: F: PDB Molecule:gtp cyclohydrolase i; PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex Phyre2 PDB 1wur chain A domain 1 Region: 34 - 219 Aligned: 185 Modelled: 186 Confidence: 100.0% Identity: 35% Fold: T-fold Superfamily: Tetrahydrobiopterin biosynthesis enzymes-like Family: GTP cyclohydrolase I Phyre2 PDB 1wm9 chain D Region: 34 - 219 Aligned: 185 Modelled: 186 Confidence: 100.0% Identity: 35% PDB header:hydrolase Chain: D: PDB Molecule:gtp cyclohydrolase i; PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8 Phyre2 PDB 3bp1 chain A Region: 117 - 177 Aligned: 59 Modelled: 61 Confidence: 93.1% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-dependent 7-cyano-7-deazaguanine reductase; PDBTitle: crystal structure of putative 7-cyano-7-deazaguanine2 reductase quef from vibrio cholerae o1 biovar eltor Phyre2 PDB 3ugs chain B Region: 123 - 147 Aligned: 25 Modelled: 25 Confidence: 40.1% Identity: 8% PDB header:transferase Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni Phyre2 PDB 3pg6 chain D Region: 117 - 149 Aligned: 32 Modelled: 33 Confidence: 39.7% Identity: 22% PDB header:ligase Chain: D: PDB Molecule:e3 ubiquitin-protein ligase dtx3l; PDBTitle: the carboxyl terminal domain of human deltex 3-like Phyre2 PDB 1ku2 chain A domain 1 Region: 35 - 62 Aligned: 28 Modelled: 28 Confidence: 33.6% Identity: 11% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors Family: Sigma3 domain Phyre2 PDB 3lk6 chain A Region: 33 - 118 Aligned: 86 Modelled: 86 Confidence: 33.4% Identity: 3% PDB header:hydrolase Chain: A: PDB Molecule:lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis Phyre2 PDB 2xcz chain A Region: 150 - 211 Aligned: 60 Modelled: 62 Confidence: 29.6% Identity: 22% PDB header:immune system Chain: A: PDB Molecule:possible atls1-like light-inducible protein; PDBTitle: crystal structure of macrophage migration inhibitory factor2 homologue from prochlorococcus marinus Phyre2 PDB 1vqo chain J domain 1 Region: 150 - 184 Aligned: 31 Modelled: 35 Confidence: 28.8% Identity: 10% Fold: Ribosomal protein L13 Superfamily: Ribosomal protein L13 Family: Ribosomal protein L13 Phyre2 PDB 2d2r chain A Region: 123 - 147 Aligned: 25 Modelled: 25 Confidence: 27.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase Phyre2 PDB 1cmc chain A Region: 21 - 57 Aligned: 35 Modelled: 37 Confidence: 25.6% Identity: 20% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Met repressor, MetJ (MetR) Phyre2 PDB 1dpt chain A Region: 150 - 218 Aligned: 66 Modelled: 69 Confidence: 25.6% Identity: 15% Fold: Tautomerase/MIF Superfamily: Tautomerase/MIF Family: MIF-related Phyre2 PDB 1jp3 chain A Region: 123 - 147 Aligned: 25 Modelled: 25 Confidence: 22.1% Identity: 32% PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase Phyre2 PDB 3ira chain A Region: 102 - 167 Aligned: 63 Modelled: 66 Confidence: 19.8% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1 Phyre2 PDB 1vhx chain A Region: 126 - 170 Aligned: 45 Modelled: 45 Confidence: 19.2% Identity: 22% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Putative Holliday junction resolvase RuvX Phyre2 PDB 3tev chain A Region: 33 - 118 Aligned: 86 Modelled: 86 Confidence: 19.1% Identity: 5% PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hyrolase, family 3; PDBTitle: the crystal structure of glycosyl hydrolase from deinococcus2 radiodurans r1 Phyre2 PDB 2vea chain A domain 1 Region: 133 - 176 Aligned: 43 Modelled: 44 Confidence: 19.1% Identity: 9% Fold: Profilin-like Superfamily: GAF domain-like Family: GAF domain Phyre2 1 d1a8ra_ 2 d1wpla_ 3 c1is7F_ 4 d1wura1 5 c1wm9D_ 6 c3bp1A_ 7 c3ugsB_ 8 c3pg6D_ 9 d1ku2a1 10 c3lk6A_ 11 c2xczA_ 12 d1vqoj1 13 c2d2rA_ 14 d1cmca_ 15 d1dpta_ 16 c1jp3A_ 17 c3iraA_ 18 d1vhxa_ 19 c3tevA_ 20 d2veaa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1a8ra_ 100.0 100 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 2 d1wpla_ 100.0 36 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 3 c1is7F_ 100.0 36 PDB header:hydrolase/protein binding Chain: F: PDB Molecule:gtp cyclohydrolase i; PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex 4 d1wura1 100.0 35 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 5 c1wm9D_ 100.0 35 PDB header:hydrolase Chain: D: PDB Molecule:gtp cyclohydrolase i; PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8 6 c3bp1A_ 93.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-dependent 7-cyano-7-deazaguanine reductase; PDBTitle: crystal structure of putative 7-cyano-7-deazaguanine2 reductase quef from vibrio cholerae o1 biovar eltor 7 c3ugsB_ 40.1 8 PDB header:transferase Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni 8 c3pg6D_ 39.7 22 PDB header:ligase Chain: D: PDB Molecule:e3 ubiquitin-protein ligase dtx3l; PDBTitle: the carboxyl terminal domain of human deltex 3-like 9 d1ku2a1 33.6 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma3 domain 10 c3lk6A_ 33.4 3 PDB header:hydrolase Chain: A: PDB Molecule:lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis 11 c2xczA_ 29.6 22 PDB header:immune system Chain: A: PDB Molecule:possible atls1-like light-inducible protein; PDBTitle: crystal structure of macrophage migration inhibitory factor2 homologue from prochlorococcus marinus 12 d1vqoj1 28.8 10 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 13 c2d2rA_ 27.0 20 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase 14 d1cmca_ 25.6 20 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Met repressor, MetJ (MetR) 15 d1dpta_ 25.6 15 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 16 c1jp3A_ 22.1 32 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase 17 c3iraA_ 19.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1 18 d1vhxa_ 19.2 22 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 19 c3tevA_ 19.1 5 PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hyrolase, family 3; PDBTitle: the crystal structure of glycosyl hydrolase from deinococcus2 radiodurans r1 20 d2veaa1 19.1 9 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 21 d2nn6f2 not modelled 18.5 44 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 22 d1ueha_ not modelled 18.2 32 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 23 c3d5bN_ not modelled 17.8 20 PDB header:ribosome Chain: N: PDB Molecule:50s ribosomal protein l13; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. 24 c3cf5G_ not modelled 17.8 17 PDB header:ribosome/antibiotic Chain: G: PDB Molecule:50s ribosomal protein l13; PDBTitle: thiopeptide antibiotic thiostrepton bound to the large ribosomal2 subunit of deinococcus radiodurans 25 d2zjrg1 not modelled 17.8 17 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 26 d1uiza_ not modelled 17.2 15 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 27 d1j3aa_ not modelled 17.0 16 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 28 d1f75a_ not modelled 16.2 32 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 29 c3bmxB_ not modelled 14.9 5 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase (ybbd) from bacillus subtilis 30 d1fima_ not modelled 14.7 12 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 31 d1l0oc_ not modelled 14.5 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 32 c1l0oC_ not modelled 14.5 8 PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf 33 d1sjya_ not modelled 13.2 13 Fold:Nudix Superfamily:Nudix Family:MutT-like 34 c3gacD_ not modelled 12.7 14 PDB header:cytokine Chain: D: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: structure of mif with hpp 35 c3b64A_ not modelled 12.3 17 PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major 36 d1aopa2 not modelled 12.1 11 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 37 c2o90A_ not modelled 11.6 15 PDB header:lyase Chain: A: PDB Molecule:dihydroneopterin aldolase; PDBTitle: atomic resolution crystal structure of e.coli2 dihydroneopterin aldolase in complex with neopterin 38 d2j01n1 not modelled 11.4 20 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 39 c2vfwB_ not modelled 11.0 16 PDB header:transferase Chain: B: PDB Molecule:short-chain z-isoprenyl diphosphate synthetase; PDBTitle: rv1086 native 40 d1gd0a_ not modelled 10.6 9 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 41 d1tr9a_ not modelled 10.5 8 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:NagZ-like 42 d2ba0g2 not modelled 10.5 22 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 43 d1vhma_ not modelled 10.3 20 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 44 c3fwtA_ not modelled 10.2 11 PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: crystal structure of leishmania major mif2 45 d1lfpa_ not modelled 10.0 29 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 46 d2o3bb1 not modelled 9.9 23 Fold:Nuclease A inhibitor (NuiA) Superfamily:Nuclease A inhibitor (NuiA) Family:Nuclease A inhibitor (NuiA) 47 d1b9la_ not modelled 9.8 28 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:DHN aldolase/epimerase 48 d1u8va1 not modelled 9.6 16 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 49 c2kduB_ not modelled 9.3 67 PDB header:metal binding protein/exocytosis Chain: B: PDB Molecule:protein unc-13 homolog a; PDBTitle: structural basis of the munc13-1/ca2+-calmodulin2 interaction: a novel 1-26 calmodulin binding motif with a3 bipartite binding mode 50 c3us8A_ not modelled 9.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase [nadp]; PDBTitle: crystal structure of an isocitrate dehydrogenase from sinorhizobium2 meliloti 1021 51 d1vixa1 not modelled 9.1 14 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 52 d1vmea1 not modelled 9.1 5 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 53 c3izcK_ not modelled 9.1 16 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein rpl16 (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 54 c3nyyA_ not modelled 8.8 21 PDB header:hydrolase Chain: A: PDB Molecule:putative glycyl-glycine endopeptidase lytm; PDBTitle: crystal structure of a putative glycyl-glycine endopeptidase lytm2 (rumgna_02482) from ruminococcus gnavus atcc 29149 at 1.60 a3 resolution 55 d1u9da_ not modelled 8.6 31 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:VC0714-like 56 d2veaa2 not modelled 8.4 16 Fold:Profilin-like Superfamily:GAF domain-like Family:Phytochrome-specific domain 57 d2je6a2 not modelled 8.4 28 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 58 d1nbua_ not modelled 8.4 13 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:DHN aldolase/epimerase 59 c2vg2C_ not modelled 8.3 17 PDB header:transferase Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase; PDBTitle: rv2361 with ipp 60 c1vixA_ not modelled 8.3 13 PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: crystal structure of a putative peptidase t 61 d1mw7a_ not modelled 8.2 7 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 62 c1s1iM_ not modelled 8.2 16 PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l16-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 63 d1n62b2 not modelled 8.2 12 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 64 c2uxqB_ not modelled 7.9 14 PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase native; PDBTitle: isocitrate dehydrogenase from the psychrophilic bacterium2 desulfotalea psychrophila: biochemical properties and3 crystal structure analysis 65 c3hlyA_ not modelled 7.6 24 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 66 c2f7tA_ not modelled 7.5 16 PDB header:dna binding protein Chain: A: PDB Molecule:mos1 transposase; PDBTitle: crystal structure of the catalytic domain of mos1 mariner2 transposase 67 d1rp3a1 not modelled 7.2 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma3 domain 68 d5nula_ not modelled 7.0 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 69 d1d8ja_ not modelled 6.9 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:The central core domain of TFIIE beta 70 d2fz5a1 not modelled 6.9 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 71 d1t0la_ not modelled 6.8 13 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 72 c2x3mA_ not modelled 6.7 19 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein orf239; PDBTitle: crystal structure of hypothetical protein orf239 from pyrobaculum2 spherical virus 73 c3fniA_ not modelled 6.6 14 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 74 c3l8jA_ not modelled 6.5 22 PDB header:protein binding Chain: A: PDB Molecule:programmed cell death protein 10; PDBTitle: crystal structure of ccm3, a cerebral cavernous malformation protein2 critical for vascular integrity 75 d1lwda_ not modelled 6.4 18 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 76 d1nbwa2 not modelled 6.4 32 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ATPase domain of dehydratase reactivase alpha subunit 77 d1vj7a2 not modelled 6.4 9 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:RelA/SpoT domain 78 c3f6sI_ not modelled 6.3 24 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 79 c3sqlB_ not modelled 6.3 12 PDB header:hydrolase Chain: B: PDB Molecule:glycosyl hydrolase family 3; PDBTitle: crystal structure of glycoside hydrolase from synechococcus 80 c3nr7A_ not modelled 6.1 18 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein h-ns; PDBTitle: crystal structure of s. typhimurium h-ns 1-83 81 c3czxA_ not modelled 6.0 24 PDB header:hydrolase Chain: A: PDB Molecule:putative n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of the putative n-acetylmuramoyl-l-2 alanine amidase from neisseria meningitidis 82 c3jywM_ not modelled 5.8 16 PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l16(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 83 d2a0sa1 not modelled 5.7 29 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:6-pyruvoyl tetrahydropterin synthase 84 c3c5tB_ not modelled 5.6 9 PDB header:signaling protein/signaling protein Chain: B: PDB Molecule:exendin-4; PDBTitle: crystal structure of the ligand-bound glucagon-like peptide-1 receptor2 extracellular domain 85 d1qwda_ not modelled 5.6 8 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 86 d2nn6e2 not modelled 5.6 22 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 87 d1pdaa1 not modelled 5.6 31 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 88 d1dhna_ not modelled 5.4 16 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:DHN aldolase/epimerase 89 c2fnzA_ not modelled 5.4 32 PDB header:oxidoreductase Chain: A: PDB Molecule:lactate dehydrogenase; PDBTitle: crystal structure of the lactate dehydrogenase from cryptosporidium2 parvum complexed with cofactor (b-nicotinamide adenine dinucleotide)3 and inhibitor (oxamic acid) 90 d2nn6a2 not modelled 5.2 11 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 91 d1otfa_ not modelled 5.2 32 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 92 c1bvyF_ not modelled 5.2 10 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 93 d1bvyf_ not modelled 5.2 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 94 c2ftcH_ not modelled 5.1 23 PDB header:ribosome Chain: H: PDB Molecule:39s ribosomal protein l13, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 95 c2h8bB_ not modelled 5.1 71 PDB header:hormone/growth factor Chain: B: PDB Molecule:insulin-like 3; PDBTitle: solution structure of insl3 96 d2fgca2 not modelled 5.0 23 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0