Email l.a.kelley@imperial.ac.uk Description P0AES4 Date Thu Jan 5 11:24:06 GMT 2012 Unique Job ID 8a01775cad7e4659

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1zvuA_ 100.0 36 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the full-length e. coli parc subunit 2 c2wl2B_ 100.0 99 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8 3 c2xcsD_ 100.0 60 PDB header:isomerase Chain: D: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a; PDBTitle: the 2.1a crystal structure of s. aureus gyrase complex with gsk2994232 and dna 4 c3ifzA_ 100.0 52 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution 5 d1ab4a_ 100.0 98 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 6 c2xcqA_ 100.0 60 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a; PDBTitle: the 2.98a crystal structure of the catalytic core (b'a'2 region) of staphylococcus aureus dna gyrase 7 c3ilwA_ 100.0 51 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: structure of dna gyrase subunit a n-terminal domain 8 c2xkjE_ 100.0 41 PDB header:isomerase Chain: E: PDB Molecule:topoisomerase iv; PDBTitle: crystal structure of catalytic core of a. baumannii topo iv2 (pare-parc fusion truncate) 9 c2inrA_ 100.0 50 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus 10 c2novD_ 100.0 47 PDB header:isomerase Chain: D: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: breakage-reunion domain of s.pneumoniae topo iv: crystal2 structure of a gram-positive quinolone target 11 c3qx3B_ 100.0 25 PDB header:isomerase/dna/isomerase inhibitor Chain: B: PDB Molecule:dna topoisomerase 2-beta; PDBTitle: human topoisomerase iibeta in complex with dna and etoposide 12 c1bjtA_ 100.0 21 PDB header:topoisomerase Chain: A: PDB Molecule:topoisomerase ii; PDBTitle: topoisomerase ii residues 409-1201 13 d1bjta_ 100.0 21 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 14 c3l6vA_ 100.0 59 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the xanthomonas campestris gyrase a c-2 terminal domain 15 d1wp5a_ 100.0 31 Fold:6-bladed beta-propeller Superfamily:GyrA/ParC C-terminal domain-like Family:GyrA/ParC C-terminal domain-like 16 d1suua_ 100.0 28 Fold:6-bladed beta-propeller Superfamily:GyrA/ParC C-terminal domain-like Family:GyrA/ParC C-terminal domain-like 17 c1zi0A_ 100.0 99 PDB header:isomerase, dna bindng protein Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: a superhelical spiral in escherichia coli dna gyrase a c-2 terminal domain imparts unidirectional supercoiling bias 18 c3no0B_ 100.0 24 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: aquifex aeolicus type iia topoisomerase c-terminal domain 19 c1zvtA_ 100.0 18 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the e. coli parc c-terminal domain 20 c3ku8A_ 100.0 100 PDB header:toxin/isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: ccdbvfi:gyra14ec 21 d1x75a1 not modelled 100.0 94 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 22 c2oajA_ not modelled 86.9 12 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:protein sni1; PDBTitle: crystal structure of sro7 from s. cerevisiae 23 c3dm0A_ not modelled 73.6 15 PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana 24 c1t3jA_ not modelled 72.3 25 PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant 25 c2q6tB_ not modelled 61.6 24 PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer 26 c3jroA_ not modelled 58.2 13 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice 27 c1c9lA_ not modelled 56.3 13 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:clathrin; PDBTitle: peptide-in-groove interactions link target proteins to the2 b-propeller of clathrin 28 d2g0da1 not modelled 56.2 16 Fold:alpha/alpha toroid Superfamily:LanC-like Family:LanC-like 29 d1jwea_ not modelled 54.0 16 Fold:N-terminal domain of DnaB helicase Superfamily:N-terminal domain of DnaB helicase Family:N-terminal domain of DnaB helicase 30 c3fokH_ not modelled 53.6 17 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:uncharacterized protein cgl0159; PDBTitle: crystal structure of cgl0159 from corynebacterium2 glutamicum (brevibacterium flavum). northeast structural3 genomics target cgr115 31 c3a7pB_ not modelled 53.5 15 PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16 32 c2vyeA_ not modelled 50.0 20 PDB header:hydrolase Chain: A: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the dnac-ssdna complex 33 c3lssA_ not modelled 48.2 14 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp 34 d2v8qb1 not modelled 47.9 22 Fold:AMPKBI-like Superfamily:AMPKBI-like Family:AMPKBI-like 35 c1q1hA_ not modelled 40.7 28 PDB header:transcription Chain: A: PDB Molecule:transcription factor e; PDBTitle: an extended winged helix domain in general transcription2 factor e/iie alpha 36 d1q1ha_ not modelled 40.7 28 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcription factor E/IIe-alpha, N-terminal domain 37 c3gndC_ not modelled 38.8 14 PDB header:lyase Chain: C: PDB Molecule:aldolase lsrf; PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate 38 d1b79a_ not modelled 35.4 17 Fold:N-terminal domain of DnaB helicase Superfamily:N-terminal domain of DnaB helicase Family:N-terminal domain of DnaB helicase 39 c1dpuA_ not modelled 35.3 36 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 40 d1dpua_ not modelled 35.3 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 41 d2ayua1 not modelled 34.1 15 Fold:NAP-like Superfamily:NAP-like Family:NAP-like 42 c2ayuA_ not modelled 34.1 15 PDB header:chaperone Chain: A: PDB Molecule:nucleosome assembly protein; PDBTitle: the structure of nucleosome assembly protein suggests a mechanism for2 histone binding and shuttling 43 c2qjhH_ not modelled 33.8 19 PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate 44 c3mkqA_ not modelled 33.5 12 PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat 45 c3a7mA_ not modelled 29.6 13 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:flagellar protein flit; PDBTitle: structure of flit, the flagellar type iii chaperone for flid 46 d2qrdb1 not modelled 29.1 15 Fold:AMPKBI-like Superfamily:AMPKBI-like Family:AMPKBI-like 47 c2h47F_ not modelled 28.6 10 PDB header:oxidoreductase/electron transport Chain: F: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 48 c2jesG_ not modelled 28.4 12 PDB header:viral protein Chain: G: PDB Molecule:portal protein; PDBTitle: portal protein from bacteriophage spp1 49 c2b5nD_ not modelled 28.0 12 PDB header:dna binding protein/protein binding Chain: D: PDB Molecule:damage-specific dna binding protein 1; PDBTitle: crystal structure of the ddb1 bpb domain 50 d2dloa1 not modelled 27.5 71 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 51 d1ivsa1 not modelled 27.3 27 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 52 c1ce0B_ not modelled 27.2 31 PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model 53 c2pqaB_ not modelled 26.5 29 PDB header:replication Chain: B: PDB Molecule:replication protein a 14 kda subunit; PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer 54 c3ushB_ not modelled 26.5 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q2s0r5 protein from salinibacter ruber,2 northeast structural genomics consortium target srr207 55 d1k32a3 not modelled 24.8 10 Fold:7-bladed beta-propeller Superfamily:Tricorn protease domain 2 Family:Tricorn protease domain 2 56 d1iwpa_ not modelled 24.5 16 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Diol dehydratase, alpha subunit 57 d1a06a_ not modelled 23.9 30 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:Protein kinases, catalytic subunit 58 c2p9mD_ not modelled 23.7 15 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein mj0922; PDBTitle: crystal structure of conserved hypothetical protein mj0922 from2 methanocaldococcus jannaschii dsm 2661 59 d2pi2e1 not modelled 23.0 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 60 c3so4C_ not modelled 22.3 18 PDB header:transferase Chain: C: PDB Molecule:methionine-adenosyltransferase; PDBTitle: methionine-adenosyltransferase from entamoeba histolytica 61 c2zezC_ not modelled 21.9 41 PDB header:hydrolase Chain: C: PDB Molecule:s-layer associated multidomain endoglucanase; PDBTitle: family 16 carbohydrate binding module-2 62 c3ocmB_ not modelled 21.0 8 PDB header:membrane protein Chain: B: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis 63 c1ztaA_ not modelled 20.6 34 PDB header:dna-binding motif Chain: A: PDB Molecule:leucine zipper monomer; PDBTitle: the solution structure of a leucine-zipper motif peptide 64 c3ol2B_ not modelled 20.4 18 PDB header:signaling protein Chain: B: PDB Molecule:plexin-b1; PDBTitle: receptor-ligand structure of human semaphorin 4d with plexin b1. 65 d1mlda2 not modelled 19.4 18 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 66 c3izcR_ not modelled 18.9 8 PDB header:ribosome Chain: R: PDB Molecule:60s ribosomal protein rpl18 (l18e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 67 c2dfdD_ not modelled 18.4 21 PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of human malate dehydrogenase type 2 68 d2f2ac1 not modelled 18.1 16 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Glu-tRNAGln amidotransferase C subunit Family:Glu-tRNAGln amidotransferase C subunit 69 c3e5zA_ not modelled 18.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative gluconolactonase; PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130. 70 c2hpcF_ not modelled 17.7 17 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 71 c1u0iA_ not modelled 17.6 33 PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer 72 c2lmiA_ not modelled 17.5 13 PDB header:rna binding protein Chain: A: PDB Molecule:g-rich sequence factor 1; PDBTitle: nmr structure of the protein bc040485 from homo sapiens 73 c2xzrA_ not modelled 17.1 17 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 74 c3czoD_ not modelled 17.0 24 PDB header:lyase Chain: D: PDB Molecule:histidine ammonia-lyase; PDBTitle: crystal structure of double mutant phenylalanine ammonia-2 lyase from anabaena variabilis 75 c2a5wC_ not modelled 16.6 19 PDB header:oxidoreductase Chain: C: PDB Molecule:sulfite reductase, desulfoviridin-type subunit gamma PDBTitle: crystal structure of the oxidized gamma-subunit of the dissimilatory2 sulfite reductase (dsrc) from archaeoglobus fulgidus 76 c3kpbA_ not modelled 16.5 17 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein mj0100; PDBTitle: crystal structure of the cbs domain pair of protein mj01002 in complex with 5 -methylthioadenosine and s-adenosyl-l-3 methionine. 77 c1mldA_ not modelled 16.4 18 PDB header:oxidoreductase(nad(a)-choh(d)) Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: refined structure of mitochondrial malate dehydrogenase2 from porcine heart and the consensus structure for3 dicarboxylic acid oxidoreductases 78 c2jjmH_ not modelled 16.1 22 PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. 79 c2pwzG_ not modelled 15.8 18 PDB header:oxidoreductase Chain: G: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of the apo form of e.coli malate dehydrogenase 80 c2pfiA_ not modelled 15.7 12 PDB header:transport protein Chain: A: PDB Molecule:chloride channel protein clc-ka; PDBTitle: crystal structure of the cytoplasmic domain of the human2 chloride channel clc-ka 81 d1y5ha3 not modelled 15.6 3 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 82 c2oszA_ not modelled 15.4 22 PDB header:structural protein Chain: A: PDB Molecule:nucleoporin p58/p45; PDBTitle: structure of nup58/45 suggests flexible nuclear pore diameter by2 intermolecular sliding 83 c1yx3A_ not modelled 15.2 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dsrc; PDBTitle: nmr structure of allochromatium vinosum dsrc: northeast2 structural genomics consortium target op4 84 c2v8kA_ not modelled 15.0 35 PDB header:lyase Chain: A: PDB Molecule:pectate lyase; PDBTitle: structure of a family 2 pectate lyase in complex with2 trigalacturonic acid 85 c2r60A_ not modelled 14.8 24 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 86 c3ltjA_ not modelled 14.6 21 PDB header:protein binding Chain: A: PDB Molecule:alpharep-4; PDBTitle: structure of a new family of artificial alpha helicoidal repeat2 proteins (alpha-rep) based on thermostable heat-like repeats 87 c3m9bK_ not modelled 14.5 20 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 88 c3somO_ not modelled 14.5 23 PDB header:oxidoreductase Chain: O: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein; PDBTitle: crystal structure of human mmachc 89 c3ue3A_ not modelled 14.3 23 PDB header:transferase Chain: A: PDB Molecule:septum formation, penicillin binding protein 3, PDBTitle: crystal structure of acinetobacter baumanni pbp3 90 c3idwA_ not modelled 13.9 20 PDB header:endocytosis Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1; PDBTitle: crystal structure of sla1 homology domain 2 91 c3l31B_ not modelled 13.8 10 PDB header:hydrolase Chain: B: PDB Molecule:probable manganase-dependent inorganic PDBTitle: crystal structure of the cbs and drtgg domains of the2 regulatory region of clostridium perfringens3 pyrophosphatase complexed with the inhibitor, amp 92 c2d4zB_ not modelled 13.8 21 PDB header:transport protein Chain: B: PDB Molecule:chloride channel protein; PDBTitle: crystal structure of the cytoplasmic domain of the chloride channel2 clc-0 93 c2qh1B_ not modelled 13.7 18 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ta0289; PDBTitle: structure of ta289, a cbs-rubredoxin-like protein, in its fe+2-bound2 state 94 d1rp3a2 not modelled 13.4 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 95 d1o50a3 not modelled 13.2 15 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 96 d1wi9a_ not modelled 12.9 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 97 c3kfuJ_ not modelled 12.9 26 PDB header:ligase/rna Chain: J: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c; PDBTitle: crystal structure of the transamidosome 98 d1n0ua3 not modelled 12.8 26 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 99 d2ca1a1 not modelled 12.7 21 Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Coronavirus nucleocapsid protein