Secondary structure and disorder prediction

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Sequence		M	L	I	F	E	G	K	E	I	E	T	D	T	E	G	Y	L	K	E	S	S	Q	W	S	E	P	L	A	V	V	I	A	E	N	E	G	I	S	L	S	P	E	H	W	E	V	V	R	F	V	R	D	F	Y	L	E	F	N	T	S
Secondary structure
SS confidence
Disorder		?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Sequence		P	A	I	R	M	L	V	K	A	M	A	N	K	F	G	E	E	K	G	N	S	R	Y	L	Y	R	L	F	P	K	G	P	A	K	Q	A	T	K	I	A	G	L	P	K	P	V	K	C	I
Secondary structure
SS confidence
Disorder																																													?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1yx3 chain A Region: 2 - 109 Aligned: 108 Modelled: 108 Confidence: 100.0% Identity: 47% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dsrc; PDBTitle: nmr structure of allochromatium vinosum dsrc: northeast2 structural genomics consortium target op4 Phyre2 PDB 2a5w chain C Region: 2 - 109 Aligned: 107 Modelled: 108 Confidence: 100.0% Identity: 40% PDB header:oxidoreductase Chain: C: PDB Molecule:sulfite reductase, desulfoviridin-type subunit gamma PDBTitle: crystal structure of the oxidized gamma-subunit of the dissimilatory2 sulfite reductase (dsrc) from archaeoglobus fulgidus Phyre2 PDB 2v4j chain C domain 1 Region: 2 - 109 Aligned: 101 Modelled: 108 Confidence: 100.0% Identity: 38% Fold: DsrC, the gamma subunit of dissimilatory sulfite reductase Superfamily: DsrC, the gamma subunit of dissimilatory sulfite reductase Family: DsrC, the gamma subunit of dissimilatory sulfite reductase Phyre2 PDB 1ji8 chain A Region: 2 - 109 Aligned: 101 Modelled: 108 Confidence: 100.0% Identity: 36% Fold: DsrC, the gamma subunit of dissimilatory sulfite reductase Superfamily: DsrC, the gamma subunit of dissimilatory sulfite reductase Family: DsrC, the gamma subunit of dissimilatory sulfite reductase Phyre2 PDB 1jhf chain A domain 1 Region: 38 - 87 Aligned: 48 Modelled: 50 Confidence: 96.5% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: LexA repressor, N-terminal DNA-binding domain Phyre2 PDB 3k2z chain A Region: 38 - 71 Aligned: 34 Modelled: 34 Confidence: 93.4% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:lexa repressor; PDBTitle: crystal structure of a lexa protein from thermotoga maritima Phyre2 PDB 1stz chain A domain 1 Region: 38 - 71 Aligned: 34 Modelled: 34 Confidence: 90.9% Identity: 12% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Heat-inducible transcription repressor HrcA, N-terminal domain Phyre2 PDB 2hku chain A domain 1 Region: 45 - 90 Aligned: 39 Modelled: 46 Confidence: 63.3% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Tetracyclin repressor-like, N-terminal domain Phyre2 PDB 2wgb chain B Region: 45 - 90 Aligned: 38 Modelled: 46 Confidence: 59.2% Identity: 13% PDB header:transcription Chain: B: PDB Molecule:tetr family transcriptional repressor lfrr; PDBTitle: crystal structure of the tetr-like transcriptional2 regulator lfrr from mycobacterium smegmatis Phyre2 PDB 1pby chain A domain 1 Region: 18 - 54 Aligned: 36 Modelled: 37 Confidence: 57.3% Identity: 28% Fold: Cytochrome c Superfamily: Cytochrome c Family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 Phyre2 PDB 1jmx chain A domain 1 Region: 18 - 62 Aligned: 41 Modelled: 45 Confidence: 57.2% Identity: 20% Fold: Cytochrome c Superfamily: Cytochrome c Family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 Phyre2 PDB 1fi4 chain A domain 2 Region: 21 - 92 Aligned: 61 Modelled: 71 Confidence: 55.8% Identity: 18% Fold: Ferredoxin-like Superfamily: GHMP Kinase, C-terminal domain Family: Mevalonate 5-diphosphate decarboxylase Phyre2 PDB 1tf5 chain A domain 1 Region: 2 - 42 Aligned: 41 Modelled: 41 Confidence: 50.3% Identity: 27% Fold: Pre-protein crosslinking domain of SecA Superfamily: Pre-protein crosslinking domain of SecA Family: Pre-protein crosslinking domain of SecA Phyre2 PDB 3on4 chain D Region: 38 - 90 Aligned: 46 Modelled: 53 Confidence: 47.2% Identity: 11% PDB header:transcription Chain: D: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of tetr transcriptional regulator from legionella2 pneumophila Phyre2 PDB 1nkt chain A domain 1 Region: 2 - 42 Aligned: 41 Modelled: 41 Confidence: 47.0% Identity: 17% Fold: Pre-protein crosslinking domain of SecA Superfamily: Pre-protein crosslinking domain of SecA Family: Pre-protein crosslinking domain of SecA Phyre2 PDB 2bpb chain B Region: 18 - 54 Aligned: 36 Modelled: 37 Confidence: 46.2% Identity: 8% PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella Phyre2 PDB 3c07 chain A domain 1 Region: 41 - 90 Aligned: 43 Modelled: 50 Confidence: 44.7% Identity: 12% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Tetracyclin repressor-like, N-terminal domain Phyre2 PDB 2g3b chain B Region: 40 - 90 Aligned: 44 Modelled: 51 Confidence: 43.7% Identity: 11% PDB header:transcription Chain: B: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 from rhodococcus sp. Phyre2 PDB 2q24 chain A Region: 45 - 90 Aligned: 39 Modelled: 46 Confidence: 43.2% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:putative tetr family transcriptional regulator; PDBTitle: crystal structure of tetr transcriptional regulator sco0520 from2 streptomyces coelicolor Phyre2 PDB 1bg6 chain A domain 1 Region: 29 - 105 Aligned: 66 Modelled: 77 Confidence: 43.1% Identity: 24% Fold: 6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like Family: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase Phyre2 1 c1yx3A_ 2 c2a5wC_ 3 d2v4jc1 4 d1ji8a_ 5 d1jhfa1 6 c3k2zA_ 7 d1stza1 8 d2hkua1 9 c2wgbB_ 10 d1pbya1 11 d1jmxa1 12 d1fi4a2 13 d1tf5a1 14 c3on4D_ 15 d1nkta1 16 c2bpbB_ 17 d3c07a1 18 c2g3bB_ 19 c2q24A_ 20 d1bg6a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1yx3A_ 100.0 47 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dsrc; PDBTitle: nmr structure of allochromatium vinosum dsrc: northeast2 structural genomics consortium target op4 2 c2a5wC_ 100.0 40 PDB header:oxidoreductase Chain: C: PDB Molecule:sulfite reductase, desulfoviridin-type subunit gamma PDBTitle: crystal structure of the oxidized gamma-subunit of the dissimilatory2 sulfite reductase (dsrc) from archaeoglobus fulgidus 3 d2v4jc1 100.0 38 Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase Family:DsrC, the gamma subunit of dissimilatory sulfite reductase 4 d1ji8a_ 100.0 36 Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase Family:DsrC, the gamma subunit of dissimilatory sulfite reductase 5 d1jhfa1 96.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 6 c3k2zA_ 93.4 18 PDB header:hydrolase Chain: A: PDB Molecule:lexa repressor; PDBTitle: crystal structure of a lexa protein from thermotoga maritima 7 d1stza1 90.9 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-inducible transcription repressor HrcA, N-terminal domain 8 d2hkua1 63.3 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 9 c2wgbB_ 59.2 13 PDB header:transcription Chain: B: PDB Molecule:tetr family transcriptional repressor lfrr; PDBTitle: crystal structure of the tetr-like transcriptional2 regulator lfrr from mycobacterium smegmatis 10 d1pbya1 57.3 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 11 d1jmxa1 57.2 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 12 d1fi4a2 55.8 18 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Mevalonate 5-diphosphate decarboxylase 13 d1tf5a1 50.3 27 Fold:Pre-protein crosslinking domain of SecA Superfamily:Pre-protein crosslinking domain of SecA Family:Pre-protein crosslinking domain of SecA 14 c3on4D_ 47.2 11 PDB header:transcription Chain: D: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of tetr transcriptional regulator from legionella2 pneumophila 15 d1nkta1 47.0 17 Fold:Pre-protein crosslinking domain of SecA Superfamily:Pre-protein crosslinking domain of SecA Family:Pre-protein crosslinking domain of SecA 16 c2bpbB_ 46.2 8 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 17 d3c07a1 44.7 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 18 c2g3bB_ 43.7 11 PDB header:transcription Chain: B: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 from rhodococcus sp. 19 c2q24A_ 43.2 21 PDB header:transcription Chain: A: PDB Molecule:putative tetr family transcriptional regulator; PDBTitle: crystal structure of tetr transcriptional regulator sco0520 from2 streptomyces coelicolor 20 d1bg6a1 43.1 24 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:N-(1-D-carboxylethyl)-L-norvaline dehydrogenase 21 d1jt6a1 not modelled 42.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 22 d2d6ya1 not modelled 42.1 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 23 d2gfna1 not modelled 40.6 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 24 d2fbqa1 not modelled 40.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 25 d1vi0a1 not modelled 39.8 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 26 d1pb6a1 not modelled 39.3 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 27 c2nsaA_ not modelled 38.2 27 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritim 28 d2g7sa1 not modelled 37.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 29 d1t33a1 not modelled 37.5 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 30 d1t56a1 not modelled 36.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 31 d2g3ba1 not modelled 35.3 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 32 c2x9oA_ not modelled 35.3 14 PDB header:oxidoreductase Chain: A: PDB Molecule:15,16- dihydrobiliverdin-ferredoxin oxidoreductase; PDBTitle: structure of 15, 16- dihydrobiliverdin:ferredoxin2 oxidoreductase (peba) 33 d2id6a1 not modelled 34.1 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 34 d2ezia_ not modelled 33.6 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 35 d2gena1 not modelled 31.5 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 36 c3cdlA_ not modelled 31.2 20 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator aefr; PDBTitle: crystal structure of a tetr family transcriptional regulator from2 pseudomonas syringae pv. tomato str. dc3000 37 d2g7ga1 not modelled 30.8 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 38 d2np5a1 not modelled 30.7 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 39 d2vkva1 not modelled 30.3 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 40 d1ui5a1 not modelled 29.7 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 41 d2id3a1 not modelled 29.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 42 d1sgma1 not modelled 29.6 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 43 d1v7ba1 not modelled 29.2 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 44 c3e7qB_ not modelled 29.1 5 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: the crystal structure of the putative transcriptional regulator from2 pseudomonas aeruginosa pao1 45 d2fd5a1 not modelled 28.9 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 46 d2fq4a1 not modelled 28.8 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 47 c2rekA_ not modelled 28.4 14 PDB header:transcription Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of tetr-family transcriptional regulator 48 c2g7lA_ not modelled 28.2 13 PDB header:transcription Chain: A: PDB Molecule:tetr-family transcriptional regulator; PDBTitle: crystal structure of putative transcription regulator sco7704 from2 streptomyces coelicor 49 c2qwtA_ not modelled 28.1 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of the tetr transcription regulatory2 protein from mycobacterium vanbaalenii 50 d2vkea1 not modelled 27.5 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 51 d2ezha_ not modelled 27.4 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 52 c2i10A_ not modelled 26.8 23 PDB header:transcription Chain: A: PDB Molecule:putative tetr transcriptional regulator; PDBTitle: putative tetr transcriptional regulator from rhodococcus sp. rha1 53 c3bjbE_ not modelled 26.7 21 PDB header:transcription regulator Chain: E: PDB Molecule:probable transcriptional regulator, tetr family protein; PDBTitle: crystal structure of a tetr transcriptional regulator from rhodococcus2 sp. rha1 54 c3he0A_ not modelled 26.6 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the structure of a putative transcriptional regulator tetr family2 protein from vibrio parahaemolyticus. 55 c1sgmA_ not modelled 26.5 18 PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf; PDBTitle: crystal structure of hypothetical protein yxaf 56 c2g7gA_ not modelled 25.9 8 PDB header:transcription Chain: A: PDB Molecule:rha04620, putative transcriptional regulator; PDBTitle: the crystal structure of the putative transcriptional regulator2 rha04620 from rhodococcus sp. rha1 57 c3lwjA_ not modelled 25.2 18 PDB header:transcription regulator Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 (yp_752756.1) from syntrophomonas wolfei str. goettingen at 2.07 a3 resolution 58 c1l0oC_ not modelled 25.2 6 PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf 59 d1l0oc_ not modelled 25.2 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 60 c3geuC_ not modelled 25.1 15 PDB header:cell adhesion Chain: C: PDB Molecule:intercellular adhesion protein r; PDBTitle: crystal structure of icar from staphylococcus aureus, a member of the2 tetracycline repressor protein family 61 d2o7ta1 not modelled 25.0 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 62 d1xpua3 not modelled 24.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 63 c1t33B_ not modelled 24.9 13 PDB header:transcription Chain: B: PDB Molecule:putative transcriptional repressor (tetr/acrr family); PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional repressor (tetr/acrr family) from salmonella3 typhimurim lt2 64 d2oi8a1 not modelled 24.6 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 65 c3gziA_ not modelled 24.5 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution 66 d1ku2a1 not modelled 24.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma3 domain 67 c2vdaA_ not modelled 24.1 24 PDB header:protein transport Chain: A: PDB Molecule:translocase subunit seca; PDBTitle: solution structure of the seca-signal peptide complex 68 d2iu5a1 not modelled 24.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 69 c3nnrA_ not modelled 23.9 10 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a tetr-family transcriptional regulator2 (maqu_3571) from marinobacter aquaeolei vt8 at 2.49 a resolution 70 c3jsjC_ not modelled 23.9 21 PDB header:transcription Chain: C: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of a putative tetr-transcriptional regulator2 (sav143) from streptomyces avermitilis ma-4680 at 2.10 a resolution 71 c2hkuB_ not modelled 23.4 13 PDB header:transcription regulator Chain: B: PDB Molecule:a putative transcriptional regulator; PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator from rhodococcus sp. rha1 72 c2qtqB_ not modelled 23.0 15 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution 73 c2fbqA_ not modelled 22.9 14 PDB header:transcription Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: the crystal structure of transcriptional regulator pa3006 74 c3egqB_ not modelled 22.8 11 PDB header:transcription Chain: B: PDB Molecule:tetr family transcriptional regulator; PDBTitle: crystal structure of a tetr-family transcriptional regulator (af_1817)2 from archaeoglobus fulgidus at 2.55 a resolution 75 c1jumB_ not modelled 22.8 18 PDB header:transcription Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine 76 c2rasB_ not modelled 22.3 17 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a putative tetr/acrr family transcriptional2 regulator (saro_0558) from novosphingobium aromaticivorans dsm at3 1.80 a resolution 77 c3hq2A_ not modelled 21.3 21 PDB header:hydrolase Chain: A: PDB Molecule:bacillus subtilis m32 carboxypeptidase; PDBTitle: bsucp crystal structure 78 c1zkgB_ not modelled 21.0 5 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of transcriptional regulator, tetr family (tm1030)2 from thermotoga maritima at 2.30 a resolution 79 c3npiB_ not modelled 20.9 18 PDB header:gene regulation Chain: B: PDB Molecule:tetr family regulatory protein; PDBTitle: crystal structure of a tetr family regulatory protein (dip1788) from2 corynebacterium diphtheriae at 2.96 a resolution 80 c2dg8D_ not modelled 20.8 13 PDB header:gene regulation Chain: D: PDB Molecule:putative tetr-family transcriptional regulatory protein; PDBTitle: crystal structure of the putative trasncriptional regulator sco75182 from streptomyces coelicolor a3(2) 81 c3bcgA_ not modelled 20.6 15 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator acrr; PDBTitle: conformational changes of the acrr regulator reveal a2 mechanism of induction 82 d2gxba1 not modelled 20.5 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 83 c2id3A_ not modelled 20.5 13 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of transcriptional regulator sco5951 from2 streptomyces coelicolor a3(2) 84 c3rh2A_ not modelled 20.4 10 PDB header:dna binding protein Chain: A: PDB Molecule:hypothetical tetr-like transcriptional regulator; PDBTitle: crystal structure of a hypothetical tetr-like transcriptional2 regulator (sama_0099) from shewanella amazonensis sb2b at 2.42 a3 resolution 85 c3ccyA_ not modelled 20.4 18 PDB header:transcription regulator Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of a tetr-family transcriptional regulator from2 bordetella parapertussis 12822 86 d1zk8a1 not modelled 20.3 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 87 c2vn2B_ not modelled 20.3 17 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 88 c2fq4A_ not modelled 20.0 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the crystal structure of the transcriptional regulator (tetr family)2 from bacillus cereus 89 d1bl0a1 not modelled 19.7 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 90 c1vi0B_ not modelled 19.7 13 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator 91 c3dewA_ not modelled 19.6 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the structure of a putative tetr family transcriptional regulator from2 geobacter sulfurreducens pca. 92 d1qgpa_ not modelled 19.3 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 93 d1d5ya1 not modelled 19.3 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 94 c2fd5A_ not modelled 18.8 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: the crystal structure of a transcriptional regulator from pseudomonas2 aeruginosa pao1 95 c2pbxB_ not modelled 18.7 5 PDB header:transcription Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein; PDBTitle: vibrio cholerae hapr 96 c1tygG_ not modelled 18.4 27 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 97 c3fiwB_ not modelled 18.4 26 PDB header:transcription regulator Chain: B: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: structure of sco0253, a tetr-family transcriptional regulator from2 streptomyces coelicolor 98 d2a0sa1 not modelled 18.1 24 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:6-pyruvoyl tetrahydropterin synthase 99 c3bqyA_ not modelled 18.0 26 PDB header:transcription regulator Chain: A: PDB Molecule:putative tetr family transcriptional regulator; PDBTitle: crystal structure of a possible tetr family transcriptional regulator2 from streptomyces coelicolor a3(2).

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0