Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	K	H	P	G	P	L	V	V	E	G	K	L	T	D	A	E	R	M	K	H	E	S	N	Y	L	R	G	T	I	A	E	D	L	N	D	G	L	T	G	G	F	K	G	D	N	F	L	L	I	R	F	H	G	M	Y	Q	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?			?	?																?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	D	R	D	I	R	A	E	R	A	E	Q	K	L	E	P	R	H	A	M	L	L	R	C	R	L	P	G	G	V	I	T	T	K	Q	W	Q	A	I	D	K	F	A	G	E	N	T	I	Y	G	S	I	R	L	T	N	R	Q	T	F
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	F	H	G	I	L	K	K	N	V	K	P	V	H	Q	M	L	H	S	V	G	L	D	A	L	A	T	A	N	D	M	N	R	N	V	L	C	T	S	N	P	Y	E	S	Q	L	H	A	E	A	Y	E	W	A	K	K	I	S	E	H
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	L	P	R	T	R	A	Y	A	E	I	W	L	D	Q	E	K	V	A	T	T	D	E	E	P	I	L	G	Q	T	Y	L	P	R	K	F	K	T	T	V	V	I	P	P	Q	N	D	I	D	L	H	A	N	D	M	N	F	V	A	I
Secondary structure
SS confidence
Disorder																			?	?	?					?	?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	E	N	G	K	L	V	G	F	N	L	L	V	G	G	G	L	S	I	E	H	G	N	K	K	T	Y	A	R	T	A	S	E	F	G	Y	L	P	L	E	H	T	L	A	V	A	E	A	V	V	T	T	Q	R	D	W	G	N	R	T
Secondary structure
SS confidence
Disorder																						?	?	?	?																																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	R	K	N	A	K	T	K	Y	T	L	E	R	V	G	V	E	T	F	K	A	E	V	E	R	R	A	G	I	K	F	E	P	I	R	P	Y	E	F	T	G	R	G	D	R	I	G	W	V	K	G	I	D	D	N	W	H	L	T	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		F	I	E	N	G	R	I	L	D	Y	P	A	R	P	L	K	T	G	L	L	E	I	A	K	I	H	K	G	D	F	R	I	T	A	N	Q	N	L	I	I	A	G	V	P	E	S	E	K	A	K	I	E	K	I	A	K	E	S	G	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		M	N	A	V	T	P	Q	R	E	N	S	M	A	C	V	S	F	P	T	C	P	L	A	M	A	E	A	E	R	F	L	P	S	F	I	D	N	I	D	N	L	M	A	K	H	G	V	S	D	E	H	I	V	M	R	V	T	G	C	P
Secondary structure
SS confidence
Disorder																																													?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		N	G	C	G	R	A	M	L	A	E	V	G	L	V	G	K	A	P	G	R	Y	N	L	H	L	G	G	N	R	I	G	T	R	I	P	R	M	Y	K	E	N	I	T	E	P	E	I	L	A	S	L	D	E	L	I	G	R	W	A	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Sequence		E	R	E	A	G	E	G	F	G	D	F	T	V	R	A	G	I	I	R	P	V	L	D	P	A	R	D	L	W	D
Secondary structure
SS confidence
Disorder			?	?	?																					?			?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1zj8 chain B Region: 2 - 559 Aligned: 524 Modelled: 528 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira; PDBTitle: structure of mycobacterium tuberculosis nira protein Phyre2 PDB 2akj chain A Region: 2 - 543 Aligned: 504 Modelled: 519 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nitrite reductase, chloroplast; PDBTitle: structure of spinach nitrite reductase Phyre2 PDB 5aop chain A Region: 81 - 570 Aligned: 456 Modelled: 464 Confidence: 100.0% Identity: 100% PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase hemoprotein; PDBTitle: sulfite reductase structure reduced with crii edta, 5-coordinate2 siroheme, siroheme feii, [4fe-4s] +1 Phyre2 PDB 2v4j chain A Region: 3 - 351 Aligned: 310 Modelled: 323 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration Phyre2 PDB 2v4j chain E Region: 38 - 348 Aligned: 271 Modelled: 276 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration Phyre2 PDB 3c7b chain E Region: 77 - 345 Aligned: 241 Modelled: 247 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus Phyre2 PDB 3c7b chain A Region: 3 - 339 Aligned: 299 Modelled: 309 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus Phyre2 PDB 1aop chain A domain 3 Region: 149 - 345 Aligned: 171 Modelled: 171 Confidence: 100.0% Identity: 100% Fold: Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like Family: Nitrite and sulphite reductase 4Fe-4S domain-like Phyre2 PDB 1aop chain A domain 4 Region: 426 - 570 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 100% Fold: Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like Family: Nitrite and sulphite reductase 4Fe-4S domain-like Phyre2 PDB 1zj8 chain A domain 2 Region: 2 - 148 Aligned: 146 Modelled: 147 Confidence: 100.0% Identity: 19% Fold: Ferredoxin-like Superfamily: Nitrite/Sulfite reductase N-terminal domain-like Family: Duplicated SiR/NiR-like domains 1 and 3 Phyre2 PDB 2akj chain A domain 4 Region: 150 - 338 Aligned: 164 Modelled: 165 Confidence: 100.0% Identity: 27% Fold: Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like Family: Nitrite and sulphite reductase 4Fe-4S domain-like Phyre2 PDB 1zj8 chain A domain 4 Region: 149 - 339 Aligned: 161 Modelled: 169 Confidence: 100.0% Identity: 25% Fold: Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like Family: Nitrite and sulphite reductase 4Fe-4S domain-like Phyre2 PDB 2akj chain A domain 2 Region: 12 - 148 Aligned: 131 Modelled: 137 Confidence: 100.0% Identity: 24% Fold: Ferredoxin-like Superfamily: Nitrite/Sulfite reductase N-terminal domain-like Family: Duplicated SiR/NiR-like domains 1 and 3 Phyre2 PDB 1zj8 chain A domain 3 Region: 424 - 559 Aligned: 136 Modelled: 136 Confidence: 100.0% Identity: 25% Fold: Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like Family: Nitrite and sulphite reductase 4Fe-4S domain-like Phyre2 PDB 3c7b chain B domain 3 Region: 428 - 565 Aligned: 135 Modelled: 138 Confidence: 100.0% Identity: 16% Fold: Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like Family: Nitrite and sulphite reductase 4Fe-4S domain-like Phyre2 PDB 2v4j chain B domain 3 Region: 425 - 569 Aligned: 144 Modelled: 145 Confidence: 100.0% Identity: 16% Fold: Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like Family: Nitrite and sulphite reductase 4Fe-4S domain-like Phyre2 PDB 3c7b chain A domain 3 Region: 426 - 565 Aligned: 137 Modelled: 140 Confidence: 100.0% Identity: 18% Fold: Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like Family: Nitrite and sulphite reductase 4Fe-4S domain-like Phyre2 PDB 2v4j chain A domain 3 Region: 425 - 565 Aligned: 139 Modelled: 141 Confidence: 100.0% Identity: 14% Fold: Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like Family: Nitrite and sulphite reductase 4Fe-4S domain-like Phyre2 PDB 2akj chain A domain 3 Region: 424 - 543 Aligned: 116 Modelled: 120 Confidence: 100.0% Identity: 22% Fold: Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like Family: Nitrite and sulphite reductase 4Fe-4S domain-like Phyre2 PDB 3c7b chain B domain 2 Region: 19 - 152 Aligned: 118 Modelled: 120 Confidence: 99.8% Identity: 11% Fold: Ferredoxin-like Superfamily: Nitrite/Sulfite reductase N-terminal domain-like Family: DsrA/DsrB N-terminal-domain-like Phyre2 1 c1zj8B_ 2 c2akjA_ 3 c5aopA_ 4 c2v4jA_ 5 c2v4jE_ 6 c3c7bE_ 7 c3c7bA_ 8 d1aopa3 9 d1aopa4 10 d1zj8a2 11 d2akja4 12 d1zj8a4 13 d2akja2 14 d1zj8a3 15 d3c7bb3 16 d2v4jb3 17 d3c7ba3 18 d2v4ja3 19 d2akja3 20 d3c7bb2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1zj8B_ 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira; PDBTitle: structure of mycobacterium tuberculosis nira protein 2 c2akjA_ 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nitrite reductase, chloroplast; PDBTitle: structure of spinach nitrite reductase 3 c5aopA_ 100.0 100 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase hemoprotein; PDBTitle: sulfite reductase structure reduced with crii edta, 5-coordinate2 siroheme, siroheme feii, [4fe-4s] +1 4 c2v4jA_ 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 5 c2v4jE_ 100.0 17 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 6 c3c7bE_ 100.0 15 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 7 c3c7bA_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 8 d1aopa3 100.0 100 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 9 d1aopa4 100.0 100 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 10 d1zj8a2 100.0 19 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 11 d2akja4 100.0 27 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 12 d1zj8a4 100.0 25 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 13 d2akja2 100.0 24 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 14 d1zj8a3 100.0 25 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 15 d3c7bb3 100.0 16 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 16 d2v4jb3 100.0 16 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 17 d3c7ba3 100.0 18 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 18 d2v4ja3 100.0 14 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 19 d2akja3 100.0 22 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 20 d3c7bb2 99.8 11 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like 21 d1zj8a1 not modelled 99.8 15 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 22 d1aopa1 not modelled 99.8 98 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 23 d2v4jb2 not modelled 99.8 11 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like 24 d1aopa2 not modelled 99.7 100 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 25 d2akja1 not modelled 99.7 14 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 26 c3noyA_ not modelled 99.7 22 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: crystal structure of ispg (gcpe) 27 d3c7ba2 not modelled 98.9 18 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like 28 c2y0fD_ not modelled 98.4 21 PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 29 d2v4ja2 not modelled 97.9 14 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like 30 d1f37b_ not modelled 78.7 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioredoxin-like 2Fe-2S ferredoxin 31 d2fug21 not modelled 78.1 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:NQO2-like 32 c3nqoB_ not modelled 73.0 11 PDB header:transcription Chain: B: PDB Molecule:marr-family transcriptional regulator; PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution 33 c2nyxB_ not modelled 67.9 10 PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis 34 d1m2da_ not modelled 61.4 28 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioredoxin-like 2Fe-2S ferredoxin 35 d3broa1 not modelled 58.7 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 36 c3nrvC_ not modelled 58.5 15 PDB header:transcription regulator Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family); PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1 37 d1lnwa_ not modelled 56.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 38 c2nnnB_ not modelled 54.4 22 PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa 39 d1s3ja_ not modelled 54.3 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 40 d2etha1 not modelled 48.0 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 41 c3k0lA_ not modelled 47.4 19 PDB header:transcription regulator Chain: A: PDB Molecule:repressor protein; PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp 42 c3g3zA_ not modelled 47.4 15 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis 43 c3bpxB_ not modelled 45.7 10 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of marr 44 d1ve4a1 not modelled 44.8 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 45 d2bv6a1 not modelled 43.4 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 46 d1p4xa2 not modelled 41.8 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 47 d1z7me1 not modelled 40.8 7 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 48 c3e6mD_ not modelled 39.5 14 PDB header:transcription regulator Chain: D: PDB Molecule:marr family transcriptional regulator; PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss. 49 c3bjaA_ not modelled 39.3 11 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution 50 d1xdpa1 not modelled 38.6 15 Fold:Spectrin repeat-like Superfamily:PPK N-terminal domain-like Family:PPK N-terminal domain-like 51 c3bj6B_ not modelled 37.6 13 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579 52 c3ereD_ not modelled 36.8 15 PDB header:dna binding protein/dna Chain: D: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator 53 c1b4aA_ not modelled 36.4 7 PDB header:repressor Chain: A: PDB Molecule:arginine repressor; PDBTitle: structure of the arginine repressor from bacillus stearothermophilus 54 d2a61a1 not modelled 35.0 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 55 d2fbha1 not modelled 34.8 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 56 d2fbia1 not modelled 32.6 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 57 d1nh8a1 not modelled 31.4 11 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 58 c1nh7A_ not modelled 31.4 11 PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: atp phosphoribosyltransferase (atp-prtase) from mycobacterium2 tuberculosis 59 d1c0aa2 not modelled 31.3 15 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 60 d1xxaa_ not modelled 30.9 9 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 61 c3cagF_ not modelled 29.8 15 PDB header:dna binding protein Chain: F: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the oligomerization domain hexamer of the2 arginine repressor protein from mycobacterium tuberculosis in complex3 with 9 arginines. 62 c2auvA_ not modelled 28.3 15 PDB header:oxidoreductase Chain: A: PDB Molecule:potential nad-reducing hydrogenase subunit; PDBTitle: solution structure of hndac : a thioredoxin-like [2fe-2s]2 ferredoxin involved in the nadp-reducing hydrogenase3 complex 63 c2fxaB_ not modelled 28.3 10 PDB header:transcription Chain: B: PDB Molecule:protease production regulatory protein hpr; PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis. 64 d1lj9a_ not modelled 26.6 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 65 d2o8ra1 not modelled 26.6 17 Fold:Spectrin repeat-like Superfamily:PPK N-terminal domain-like Family:PPK N-terminal domain-like 66 c1r1gB_ not modelled 26.3 57 PDB header:toxin Chain: B: PDB Molecule:neurotoxin bmk37; PDBTitle: crystal structure of the scorpion toxin bmbkttx1 67 d1r1ga_ not modelled 26.3 57 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 68 c1r1gA_ not modelled 26.3 57 PDB header:toxin Chain: A: PDB Molecule:neurotoxin bmk37; PDBTitle: crystal structure of the scorpion toxin bmbkttx1 69 d1b5ta_ not modelled 26.1 12 Fold:TIM beta/alpha-barrel Superfamily:FAD-linked oxidoreductase Family:Methylenetetrahydrofolate reductase 70 d1olta_ not modelled 25.9 10 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Oxygen-independent coproporphyrinogen III oxidase HemN 71 d2r48a1 not modelled 24.3 38 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 72 c2qwwB_ not modelled 24.0 16 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution 73 d1zhva2 not modelled 23.9 9 Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like 74 d1qrjb1 not modelled 23.8 25 Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:Retrovirus capsid protein C-terminal domain 75 c3cdhB_ not modelled 22.5 7 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of the marr family transcriptional regulator spo14532 from silicibacter pomeroyi dss-3 76 c1p4xA_ not modelled 21.9 10 PDB header:transcription Chain: A: PDB Molecule:staphylococcal accessory regulator a homologue; PDBTitle: crystal structure of sars protein from staphylococcus aureus 77 d1z91a1 not modelled 21.8 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 78 d2r4qa1 not modelled 21.5 50 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 79 d1hsja1 not modelled 20.6 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 80 d1s4ea2 not modelled 20.2 16 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Galactokinase 81 c2kyrA_ not modelled 19.9 25 PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 82 c3lx4B_ not modelled 19.6 23 PDB header:oxidoreductase Chain: B: PDB Molecule:fe-hydrogenase; PDBTitle: stepwise [fefe]-hydrogenase h-cluster assembly revealed in the2 structure of hyda(deltaefg) 83 d1t6sa1 not modelled 19.3 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ScpB/YpuH-like 84 d1jgsa_ not modelled 19.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 85 c2vd2A_ not modelled 19.1 17 PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: the crystal structure of hisg from b. subtilis 86 d1piea2 not modelled 19.0 16 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Galactokinase 87 c1xdoB_ not modelled 19.0 15 PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase 88 d2p5ma1 not modelled 18.7 11 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 89 d1ffgb_ not modelled 18.4 13 Fold:Ferredoxin-like Superfamily:CheY-binding domain of CheA Family:CheY-binding domain of CheA 90 c3cjnA_ not modelled 18.4 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi 91 c3oopA_ not modelled 18.2 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2960 protein; PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262 92 c1zhvA_ not modelled 17.8 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein atu0741; PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8. 93 d1jvaa3 not modelled 17.7 15 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 94 c3hrmA_ not modelled 17.6 8 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator sarz; PDBTitle: crystal structure of staphylococcus aureus protein sarz in sulfenic2 acid form 95 d1l0wa2 not modelled 17.2 16 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 96 d1we6a_ not modelled 16.7 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 97 d1a8oa_ not modelled 15.6 33 Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:Retrovirus capsid protein C-terminal domain 98 c3v4gA_ not modelled 15.4 11 PDB header:dna binding protein Chain: A: PDB Molecule:arginine repressor; PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6 99 d2eiaa1 not modelled 15.0 33 Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:Retrovirus capsid protein C-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0