Phyre 2 Results for P17846

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Email | l.a.kelley@imperial.ac.uk
Description | P17846
Date | Thu Jan 5 11:36:18 GMT 2012
Unique Job ID | 86e2e456c6a8d4b9

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1zj8B_
Top template information
PDB header:oxidoreductase Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira; PDBTitle: structure of mycobacterium tuberculosis nira protein
Confidence and coverage
Confidence: | 100.0% | Coverage: | 92%
524 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | E | K | H | P | G | P | L | V | V | E | G | K | L | T | D | A | E | R | M | K | H | E | S | N | Y | L | R | G | T | I | A | E | D | L | N | D | G | L | T | G | G | F | K | G | D | N | F | L | L | I | R | F | H | G | M | Y | Q | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? | ? | ? |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | D | D | R | D | I | R | A | E | R | A | E | Q | K | L | E | P | R | H | A | M | L | L | R | C | R | L | P | G | G | V | I | T | T | K | Q | W | Q | A | I | D | K | F | A | G | E | N | T | I | Y | G | S | I | R | L | T | N | R | Q | T | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | Q | F | H | G | I | L | K | K | N | V | K | P | V | H | Q | M | L | H | S | V | G | L | D | A | L | A | T | A | N | D | M | N | R | N | V | L | C | T | S | N | P | Y | E | S | Q | L | H | A | E | A | Y | E | W | A | K | K | I | S | E | H
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | L | L | P | R | T | R | A | Y | A | E | I | W | L | D | Q | E | K | V | A | T | T | D | E | E | P | I | L | G | Q | T | Y | L | P | R | K | F | K | T | T | V | V | I | P | P | Q | N | D | I | D | L | H | A | N | D | M | N | F | V | A | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  | ? | ? |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | A | E | N | G | K | L | V | G | F | N | L | L | V | G | G | G | L | S | I | E | H | G | N | K | K | T | Y | A | R | T | A | S | E | F | G | Y | L | P | L | E | H | T | L | A | V | A | E | A | V | V | T | T | Q | R | D | W | G | N | R | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | D | R | K | N | A | K | T | K | Y | T | L | E | R | V | G | V | E | T | F | K | A | E | V | E | R | R | A | G | I | K | F | E | P | I | R | P | Y | E | F | T | G | R | G | D | R | I | G | W | V | K | G | I | D | D | N | W | H | L | T | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | F | I | E | N | G | R | I | L | D | Y | P | A | R | P | L | K | T | G | L | L | E | I | A | K | I | H | K | G | D | F | R | I | T | A | N | Q | N | L | I | I | A | G | V | P | E | S | E | K | A | K | I | E | K | I | A | K | E | S | G | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | M | N | A | V | T | P | Q | R | E | N | S | M | A | C | V | S | F | P | T | C | P | L | A | M | A | E | A | E | R | F | L | P | S | F | I | D | N | I | D | N | L | M | A | K | H | G | V | S | D | E | H | I | V | M | R | V | T | G | C | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | N | G | C | G | R | A | M | L | A | E | V | G | L | V | G | K | A | P | G | R | Y | N | L | H | L | G | G | N | R | I | G | T | R | I | P | R | M | Y | K | E | N | I | T | E | P | E | I | L | A | S | L | D | E | L | I | G | R | W | A | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570
Sequence |  | E | R | E | A | G | E | G | F | G | D | F | T | V | R | A | G | I | I | R | P | V | L | D | P | A | R | D | L | W | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1zj8B_ |

### PDB 1zj8 chain B

Region: 2 - 559
Aligned: 524
Modelled: 528
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira;
PDBTitle: structure of mycobacterium tuberculosis nira protein

Phyre2
2 |
| c2akjA_ |

### PDB 2akj chain A

Region: 2 - 543
Aligned: 504
Modelled: 519
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nitrite reductase, chloroplast;
PDBTitle: structure of spinach nitrite reductase

Phyre2
3 |
| c5aopA_ |

### PDB 5aop chain A

Region: 81 - 570
Aligned: 456
Modelled: 464
Confidence: 100.0%
Identity: 100%
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase hemoprotein;
PDBTitle: sulfite reductase structure reduced with crii edta, 5-coordinate2 siroheme, siroheme feii, [4fe-4s] +1

Phyre2
4 |
| c2v4jA_ |

### PDB 2v4j chain A

Region: 3 - 351
Aligned: 310
Modelled: 323
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration

Phyre2
5 |
| c2v4jE_ |

### PDB 2v4j chain E

Region: 38 - 348
Aligned: 271
Modelled: 276
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration

Phyre2
6 |
| c3c7bE_ |

### PDB 3c7b chain E

Region: 77 - 345
Aligned: 241
Modelled: 247
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus

Phyre2
7 |
| c3c7bA_ |

### PDB 3c7b chain A

Region: 3 - 339
Aligned: 299
Modelled: 309
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus

Phyre2
8 |
| d1aopa3 |

### PDB 1aop chain A domain 3

Region: 149 - 345
Aligned: 171
Modelled: 171
Confidence: 100.0%
Identity: 100%
Fold: Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
Family: Nitrite and sulphite reductase 4Fe-4S domain-like

Phyre2
9 |
| d1aopa4 |

### PDB 1aop chain A domain 4

Region: 426 - 570
Aligned: 145
Modelled: 145
Confidence: 100.0%
Identity: 100%
Fold: Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
Family: Nitrite and sulphite reductase 4Fe-4S domain-like

Phyre2
10 |
| d1zj8a2 |

### PDB 1zj8 chain A domain 2

Region: 2 - 148
Aligned: 146
Modelled: 147
Confidence: 100.0%
Identity: 19%
Fold: Ferredoxin-like
Superfamily: Nitrite/Sulfite reductase N-terminal domain-like
Family: Duplicated SiR/NiR-like domains 1 and 3

Phyre2
11 |
| d2akja4 |

### PDB 2akj chain A domain 4

Region: 150 - 338
Aligned: 164
Modelled: 165
Confidence: 100.0%
Identity: 27%
Fold: Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
Family: Nitrite and sulphite reductase 4Fe-4S domain-like

Phyre2
12 |
| d1zj8a4 |

### PDB 1zj8 chain A domain 4

Region: 149 - 339
Aligned: 161
Modelled: 169
Confidence: 100.0%
Identity: 25%
Fold: Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
Family: Nitrite and sulphite reductase 4Fe-4S domain-like

Phyre2
13 |
| d2akja2 |

### PDB 2akj chain A domain 2

Region: 12 - 148
Aligned: 131
Modelled: 137
Confidence: 100.0%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: Nitrite/Sulfite reductase N-terminal domain-like
Family: Duplicated SiR/NiR-like domains 1 and 3

Phyre2
14 |
| d1zj8a3 |

### PDB 1zj8 chain A domain 3

Region: 424 - 559
Aligned: 136
Modelled: 136
Confidence: 100.0%
Identity: 25%
Fold: Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
Family: Nitrite and sulphite reductase 4Fe-4S domain-like

Phyre2
15 |
| d3c7bb3 |

### PDB 3c7b chain B domain 3

Region: 428 - 565
Aligned: 135
Modelled: 138
Confidence: 100.0%
Identity: 16%
Fold: Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
Family: Nitrite and sulphite reductase 4Fe-4S domain-like

Phyre2
16 |
| d2v4jb3 |

### PDB 2v4j chain B domain 3

Region: 425 - 569
Aligned: 144
Modelled: 145
Confidence: 100.0%
Identity: 16%
Fold: Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
Family: Nitrite and sulphite reductase 4Fe-4S domain-like

Phyre2
17 |
| d3c7ba3 |

### PDB 3c7b chain A domain 3

Region: 426 - 565
Aligned: 137
Modelled: 140
Confidence: 100.0%
Identity: 18%
Fold: Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
Family: Nitrite and sulphite reductase 4Fe-4S domain-like

Phyre2
18 |
| d2v4ja3 |

### PDB 2v4j chain A domain 3

Region: 425 - 565
Aligned: 139
Modelled: 141
Confidence: 100.0%
Identity: 14%
Fold: Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
Family: Nitrite and sulphite reductase 4Fe-4S domain-like

Phyre2
19 |
| d2akja3 |

### PDB 2akj chain A domain 3

Region: 424 - 543
Aligned: 116
Modelled: 120
Confidence: 100.0%
Identity: 22%
Fold: Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
Family: Nitrite and sulphite reductase 4Fe-4S domain-like

Phyre2
20 |
| d3c7bb2 |

### PDB 3c7b chain B domain 2

Region: 19 - 152
Aligned: 118
Modelled: 120
Confidence: 99.8%
Identity: 11%
Fold: Ferredoxin-like
Superfamily: Nitrite/Sulfite reductase N-terminal domain-like
Family: DsrA/DsrB N-terminal-domain-like

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1zj8B_ |
|  | 100.0 | 22 | PDB header:oxidoreductase Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira; PDBTitle: structure of mycobacterium tuberculosis nira protein
2 | c2akjA_ |
|  | 100.0 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nitrite reductase, chloroplast; PDBTitle: structure of spinach nitrite reductase
3 | c5aopA_ |
|  | 100.0 | 100 | PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase hemoprotein; PDBTitle: sulfite reductase structure reduced with crii edta, 5-coordinate2 siroheme, siroheme feii, [4fe-4s] +1
4 | c2v4jA_ |
|  | 100.0 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
5 | c2v4jE_ |
|  | 100.0 | 17 | PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
6 | c3c7bE_ |
|  | 100.0 | 15 | PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
7 | c3c7bA_ |
|  | 100.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
8 | d1aopa3 |
|  | 100.0 | 100 | Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like
9 | d1aopa4 |
|  | 100.0 | 100 | Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like
10 | d1zj8a2 |
|  | 100.0 | 19 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3
11 | d2akja4 |
|  | 100.0 | 27 | Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like
12 | d1zj8a4 |
|  | 100.0 | 25 | Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like
13 | d2akja2 |
|  | 100.0 | 24 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3
14 | d1zj8a3 |
|  | 100.0 | 25 | Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like
15 | d3c7bb3 |
|  | 100.0 | 16 | Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like
16 | d2v4jb3 |
|  | 100.0 | 16 | Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like
17 | d3c7ba3 |
|  | 100.0 | 18 | Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like
18 | d2v4ja3 |
|  | 100.0 | 14 | Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like
19 | d2akja3 |
|  | 100.0 | 22 | Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like
20 | d3c7bb2 |
|  | 99.8 | 11 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like
21 | d1zj8a1 |
| not modelled | 99.8 | 15 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3
22 | d1aopa1 |
| not modelled | 99.8 | 98 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3
23 | d2v4jb2 |
| not modelled | 99.8 | 11 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like
24 | d1aopa2 |
| not modelled | 99.7 | 100 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3
25 | d2akja1 |
| not modelled | 99.7 | 14 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3
26 | c3noyA_ |
| not modelled | 99.7 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: crystal structure of ispg (gcpe)
27 | d3c7ba2 |
| not modelled | 98.9 | 18 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like
28 | c2y0fD_ |
| not modelled | 98.4 | 21 | PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27
29 | d2v4ja2 |
| not modelled | 97.9 | 14 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like
30 | d1f37b_ |
| not modelled | 78.7 | 22 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioredoxin-like 2Fe-2S ferredoxin
31 | d2fug21 |
| not modelled | 78.1 | 21 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:NQO2-like
32 | c3nqoB_ |
| not modelled | 73.0 | 11 | PDB header:transcription Chain: B: PDB Molecule:marr-family transcriptional regulator; PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
33 | c2nyxB_ |
| not modelled | 67.9 | 10 | PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis
34 | d1m2da_ |
| not modelled | 61.4 | 28 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioredoxin-like 2Fe-2S ferredoxin
35 | d3broa1 |
| not modelled | 58.7 | 11 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
36 | c3nrvC_ |
| not modelled | 58.5 | 15 | PDB header:transcription regulator Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family); PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
37 | d1lnwa_ |
| not modelled | 56.2 | 13 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
38 | c2nnnB_ |
| not modelled | 54.4 | 22 | PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa
39 | d1s3ja_ |
| not modelled | 54.3 | 15 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
40 | d2etha1 |
| not modelled | 48.0 | 16 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
41 | c3k0lA_ |
| not modelled | 47.4 | 19 | PDB header:transcription regulator Chain: A: PDB Molecule:repressor protein; PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp
42 | c3g3zA_ |
| not modelled | 47.4 | 15 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
43 | c3bpxB_ |
| not modelled | 45.7 | 10 | PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of marr
44 | d1ve4a1 |
| not modelled | 44.8 | 13 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
45 | d2bv6a1 |
| not modelled | 43.4 | 13 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
46 | d1p4xa2 |
| not modelled | 41.8 | 7 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
47 | d1z7me1 |
| not modelled | 40.8 | 7 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
48 | c3e6mD_ |
| not modelled | 39.5 | 14 | PDB header:transcription regulator Chain: D: PDB Molecule:marr family transcriptional regulator; PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss.
49 | c3bjaA_ |
| not modelled | 39.3 | 11 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution
50 | d1xdpa1 |
| not modelled | 38.6 | 15 | Fold:Spectrin repeat-like Superfamily:PPK N-terminal domain-like Family:PPK N-terminal domain-like
51 | c3bj6B_ |
| not modelled | 37.6 | 13 | PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579
52 | c3ereD_ |
| not modelled | 36.8 | 15 | PDB header:dna binding protein/dna Chain: D: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator
53 | c1b4aA_ |
| not modelled | 36.4 | 7 | PDB header:repressor Chain: A: PDB Molecule:arginine repressor; PDBTitle: structure of the arginine repressor from bacillus stearothermophilus
54 | d2a61a1 |
| not modelled | 35.0 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
55 | d2fbha1 |
| not modelled | 34.8 | 18 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
56 | d2fbia1 |
| not modelled | 32.6 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
57 | d1nh8a1 |
| not modelled | 31.4 | 11 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
58 | c1nh7A_ |
| not modelled | 31.4 | 11 | PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: atp phosphoribosyltransferase (atp-prtase) from mycobacterium2 tuberculosis
59 | d1c0aa2 |
| not modelled | 31.3 | 15 | Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain
60 | d1xxaa_ |
| not modelled | 30.9 | 9 | Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor
61 | c3cagF_ |
| not modelled | 29.8 | 15 | PDB header:dna binding protein Chain: F: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the oligomerization domain hexamer of the2 arginine repressor protein from mycobacterium tuberculosis in complex3 with 9 arginines.
62 | c2auvA_ |
| not modelled | 28.3 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:potential nad-reducing hydrogenase subunit; PDBTitle: solution structure of hndac : a thioredoxin-like [2fe-2s]2 ferredoxin involved in the nadp-reducing hydrogenase3 complex
63 | c2fxaB_ |
| not modelled | 28.3 | 10 | PDB header:transcription Chain: B: PDB Molecule:protease production regulatory protein hpr; PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis.
64 | d1lj9a_ |
| not modelled | 26.6 | 9 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
65 | d2o8ra1 |
| not modelled | 26.6 | 17 | Fold:Spectrin repeat-like Superfamily:PPK N-terminal domain-like Family:PPK N-terminal domain-like
66 | c1r1gB_ |
| not modelled | 26.3 | 57 | PDB header:toxin Chain: B: PDB Molecule:neurotoxin bmk37; PDBTitle: crystal structure of the scorpion toxin bmbkttx1
67 | d1r1ga_ |
| not modelled | 26.3 | 57 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins
68 | c1r1gA_ |
| not modelled | 26.3 | 57 | PDB header:toxin Chain: A: PDB Molecule:neurotoxin bmk37; PDBTitle: crystal structure of the scorpion toxin bmbkttx1
69 | d1b5ta_ |
| not modelled | 26.1 | 12 | Fold:TIM beta/alpha-barrel Superfamily:FAD-linked oxidoreductase Family:Methylenetetrahydrofolate reductase
70 | d1olta_ |
| not modelled | 25.9 | 10 | Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Oxygen-independent coproporphyrinogen III oxidase HemN
71 | d2r48a1 |
| not modelled | 24.3 | 38 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like
72 | c2qwwB_ |
| not modelled | 24.0 | 16 | PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
73 | d1zhva2 |
| not modelled | 23.9 | 9 | Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like
74 | d1qrjb1 |
| not modelled | 23.8 | 25 | Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:Retrovirus capsid protein C-terminal domain
75 | c3cdhB_ |
| not modelled | 22.5 | 7 | PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of the marr family transcriptional regulator spo14532 from silicibacter pomeroyi dss-3
76 | c1p4xA_ |
| not modelled | 21.9 | 10 | PDB header:transcription Chain: A: PDB Molecule:staphylococcal accessory regulator a homologue; PDBTitle: crystal structure of sars protein from staphylococcus aureus
77 | d1z91a1 |
| not modelled | 21.8 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
78 | d2r4qa1 |
| not modelled | 21.5 | 50 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like
79 | d1hsja1 |
| not modelled | 20.6 | 7 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
80 | d1s4ea2 |
| not modelled | 20.2 | 16 | Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Galactokinase
81 | c2kyrA_ |
| not modelled | 19.9 | 25 | PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
82 | c3lx4B_ |
| not modelled | 19.6 | 23 | PDB header:oxidoreductase Chain: B: PDB Molecule:fe-hydrogenase; PDBTitle: stepwise [fefe]-hydrogenase h-cluster assembly revealed in the2 structure of hyda(deltaefg)
83 | d1t6sa1 |
| not modelled | 19.3 | 12 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ScpB/YpuH-like
84 | d1jgsa_ |
| not modelled | 19.1 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
85 | c2vd2A_ |
| not modelled | 19.1 | 17 | PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: the crystal structure of hisg from b. subtilis
86 | d1piea2 |
| not modelled | 19.0 | 16 | Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Galactokinase
87 | c1xdoB_ |
| not modelled | 19.0 | 15 | PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase
88 | d2p5ma1 |
| not modelled | 18.7 | 11 | Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor
89 | d1ffgb_ |
| not modelled | 18.4 | 13 | Fold:Ferredoxin-like Superfamily:CheY-binding domain of CheA Family:CheY-binding domain of CheA
90 | c3cjnA_ |
| not modelled | 18.4 | 16 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi
91 | c3oopA_ |
| not modelled | 18.2 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2960 protein; PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262
92 | c1zhvA_ |
| not modelled | 17.8 | 9 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein atu0741; PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8.
93 | d1jvaa3 |
| not modelled | 17.7 | 15 | Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease
94 | c3hrmA_ |
| not modelled | 17.6 | 8 | PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator sarz; PDBTitle: crystal structure of staphylococcus aureus protein sarz in sulfenic2 acid form
95 | d1l0wa2 |
| not modelled | 17.2 | 16 | Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain
96 | d1we6a_ |
| not modelled | 16.7 | 16 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related
97 | d1a8oa_ |
| not modelled | 15.6 | 33 | Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:Retrovirus capsid protein C-terminal domain
98 | c3v4gA_ |
| not modelled | 15.4 | 11 | PDB header:dna binding protein Chain: A: PDB Molecule:arginine repressor; PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6
99 | d2eiaa1 |
| not modelled | 15.0 | 33 | Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:Retrovirus capsid protein C-terminal domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0