Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	T	L	R	L	L	I	S	D	S	Y	D	P	W	F	N	L	A	V	E	E	C	I	F	R	Q	M	P	A	T	Q	R	V	L	F	L	W	R	N	A	D	T	V	V	I	G	R	A	Q	N	P	W	K	E	C	N	T	R	R
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	E	E	D	N	V	R	L	A	R	R	S	S	G	G	G	A	V	F	H	D	L	G	N	T	C	F	T	F	M	A	G	K	P	E	Y	D	K	T	I	S	T	S	I	V	L	N	A	L	N	A	L	G	V	S	A	E	A	S	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	N	D	L	V	V	K	T	V	E	G	D	R	K	V	S	G	S	A	Y	R	E	T	K	D	R	G	F	H	H	G	T	L	L	L	N	A	D	L	S	R	L	A	N	Y	L	N	P	D	K	K	K	L	A	A	K	G	I	T	S
Secondary structure
SS confidence
Disorder																																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	R	S	R	V	T	N	L	T	E	L	L	P	G	I	T	H	E	Q	V	C	E	A	I	T	E	A	F	F	A	H	Y	G	E	R	V	E	A	E	I	I	S	P	N	K	T	P	D	L	P	N	F	A	E	T	F	A	R	Q	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	W	E	W	N	F	G	Q	A	P	A	F	S	H	L	L	D	E	R	F	T	W	G	G	V	E	L	H	F	D	V	E	K	G	H	I	T	R	A	Q	V	F	T	D	S	L	N	P	A	P	L	E	A	L	A	G	R	L	Q	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Sequence		C	L	Y	R	A	D	M	L	Q	Q	E	C	E	A	L	L	V	D	F	P	E	Q	E	K	E	L	R	E	L	S	A	W	M	A	G	A	V	R
Secondary structure
SS confidence
Disorder																					?	?	?	?	?												?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1x2g chain B Region: 2 - 338 Aligned: 330 Modelled: 337 Confidence: 100.0% Identity: 96% PDB header:ligase Chain: B: PDB Molecule:lipoate-protein ligase a; PDBTitle: crystal structure of lipate-protein ligase a from2 escherichia coli Phyre2 PDB 1vqz chain A Region: 4 - 335 Aligned: 325 Modelled: 329 Confidence: 100.0% Identity: 31% PDB header:ligase Chain: A: PDB Molecule:lipoate-protein ligase, putative; PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution Phyre2 PDB 2e5a chain A Region: 5 - 321 Aligned: 311 Modelled: 317 Confidence: 100.0% Identity: 33% PDB header:ligase Chain: A: PDB Molecule:lipoyltransferase 1; PDBTitle: crystal structure of bovine lipoyltransferase in complex2 with lipoyl-amp Phyre2 PDB 1x2g chain A domain 2 Region: 2 - 247 Aligned: 240 Modelled: 246 Confidence: 100.0% Identity: 99% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: LplA-like Phyre2 PDB 1vqz chain A domain 2 Region: 5 - 247 Aligned: 236 Modelled: 241 Confidence: 100.0% Identity: 36% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: LplA-like Phyre2 PDB 2c8m chain A domain 1 Region: 1 - 247 Aligned: 225 Modelled: 226 Confidence: 100.0% Identity: 30% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: LplA-like Phyre2 PDB 2p5i chain A domain 1 Region: 3 - 238 Aligned: 231 Modelled: 236 Confidence: 100.0% Identity: 18% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: LplA-like Phyre2 PDB 2p0l chain A domain 1 Region: 1 - 233 Aligned: 228 Modelled: 233 Confidence: 100.0% Identity: 18% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: LplA-like Phyre2 PDB 2qhs chain A Region: 2 - 215 Aligned: 200 Modelled: 204 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:lipoyltransferase; PDBTitle: structural basis of octanoic acid recognition by lipoate-protein2 ligase b Phyre2 PDB 2qhv chain A Region: 2 - 215 Aligned: 200 Modelled: 204 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:lipoyltransferase; PDBTitle: structural basis of octanoic acid recognition by lipoate-protein2 ligase b Phyre2 PDB 1w66 chain A domain 1 Region: 1 - 217 Aligned: 200 Modelled: 217 Confidence: 100.0% Identity: 19% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: LplA-like Phyre2 PDB 1x2g chain A domain 1 Region: 248 - 338 Aligned: 91 Modelled: 91 Confidence: 99.9% Identity: 98% Fold: SufE/NifU Superfamily: SufE/NifU Family: SP1160 C-terminal domain-like Phyre2 PDB 1vqz chain A domain 1 Region: 248 - 335 Aligned: 88 Modelled: 88 Confidence: 99.8% Identity: 18% Fold: SufE/NifU Superfamily: SufE/NifU Family: SP1160 C-terminal domain-like Phyre2 PDB 2eay chain B Region: 68 - 212 Aligned: 118 Modelled: 145 Confidence: 97.8% Identity: 18% PDB header:ligase Chain: B: PDB Molecule:biotin [acetyl-coa-carboxylase] ligase; PDBTitle: crystal structure of biotin protein ligase from aquifex2 aeolicus Phyre2 PDB 2zgw chain A domain 2 Region: 71 - 212 Aligned: 116 Modelled: 120 Confidence: 97.8% Identity: 19% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: Biotin holoenzyme synthetase Phyre2 PDB 2ej9 chain A Region: 71 - 212 Aligned: 124 Modelled: 124 Confidence: 97.7% Identity: 16% PDB header:ligase Chain: A: PDB Molecule:putative biotin ligase; PDBTitle: crystal structure of biotin protein ligase from2 methanococcus jannaschii Phyre2 PDB 2ewn chain A Region: 71 - 212 Aligned: 124 Modelled: 142 Confidence: 97.4% Identity: 18% PDB header:ligase, transcription Chain: A: PDB Molecule:bira bifunctional protein; PDBTitle: ecoli biotin repressor with co-repressor analog Phyre2 PDB 3bfm chain A Region: 75 - 212 Aligned: 121 Modelled: 138 Confidence: 97.2% Identity: 15% PDB header:unknown function Chain: A: PDB Molecule:biotin protein ligase-like protein of unknown function; PDBTitle: crystal structure of a biotin protein ligase-like protein of unknown2 function (tm1040_0394) from silicibacter sp. tm1040 at 1.70 a3 resolution Phyre2 PDB 2dzc chain A Region: 68 - 212 Aligned: 113 Modelled: 123 Confidence: 96.7% Identity: 20% PDB header:ligase Chain: A: PDB Molecule:biotin--[acetyl-coa-carboxylase] ligase; PDBTitle: crystal structure of biotin protein ligase from pyrococcus2 horikoshii, mutation r48a Phyre2 PDB 2cgh chain B Region: 40 - 212 Aligned: 118 Modelled: 128 Confidence: 96.6% Identity: 14% PDB header:ligase Chain: B: PDB Molecule:biotin ligase; PDBTitle: crystal structure of biotin ligase from mycobacterium2 tuberculosis Phyre2 1 c1x2gB_ 2 c1vqzA_ 3 c2e5aA_ 4 d1x2ga2 5 d1vqza2 6 d2c8ma1 7 d2p5ia1 8 d2p0la1 9 c2qhsA_ 10 c2qhvA_ 11 d1w66a1 12 d1x2ga1 13 d1vqza1 14 c2eayB_ 15 d2zgwa2 16 c2ej9A_ 17 c2ewnA_ 18 c3bfmA_ 19 c2dzcA_ 20 c2cghB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1x2gB_ 100.0 96 PDB header:ligase Chain: B: PDB Molecule:lipoate-protein ligase a; PDBTitle: crystal structure of lipate-protein ligase a from2 escherichia coli 2 c1vqzA_ 100.0 31 PDB header:ligase Chain: A: PDB Molecule:lipoate-protein ligase, putative; PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution 3 c2e5aA_ 100.0 33 PDB header:ligase Chain: A: PDB Molecule:lipoyltransferase 1; PDBTitle: crystal structure of bovine lipoyltransferase in complex2 with lipoyl-amp 4 d1x2ga2 100.0 99 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:LplA-like 5 d1vqza2 100.0 36 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:LplA-like 6 d2c8ma1 100.0 30 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:LplA-like 7 d2p5ia1 100.0 18 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:LplA-like 8 d2p0la1 100.0 18 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:LplA-like 9 c2qhsA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:lipoyltransferase; PDBTitle: structural basis of octanoic acid recognition by lipoate-protein2 ligase b 10 c2qhvA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:lipoyltransferase; PDBTitle: structural basis of octanoic acid recognition by lipoate-protein2 ligase b 11 d1w66a1 100.0 19 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:LplA-like 12 d1x2ga1 99.9 98 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 13 d1vqza1 99.8 18 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 14 c2eayB_ 97.8 18 PDB header:ligase Chain: B: PDB Molecule:biotin [acetyl-coa-carboxylase] ligase; PDBTitle: crystal structure of biotin protein ligase from aquifex2 aeolicus 15 d2zgwa2 97.8 19 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Biotin holoenzyme synthetase 16 c2ej9A_ 97.7 16 PDB header:ligase Chain: A: PDB Molecule:putative biotin ligase; PDBTitle: crystal structure of biotin protein ligase from2 methanococcus jannaschii 17 c2ewnA_ 97.4 18 PDB header:ligase, transcription Chain: A: PDB Molecule:bira bifunctional protein; PDBTitle: ecoli biotin repressor with co-repressor analog 18 c3bfmA_ 97.2 15 PDB header:unknown function Chain: A: PDB Molecule:biotin protein ligase-like protein of unknown function; PDBTitle: crystal structure of a biotin protein ligase-like protein of unknown2 function (tm1040_0394) from silicibacter sp. tm1040 at 1.70 a3 resolution 19 c2dzcA_ 96.7 20 PDB header:ligase Chain: A: PDB Molecule:biotin--[acetyl-coa-carboxylase] ligase; PDBTitle: crystal structure of biotin protein ligase from pyrococcus2 horikoshii, mutation r48a 20 c2cghB_ 96.6 14 PDB header:ligase Chain: B: PDB Molecule:biotin ligase; PDBTitle: crystal structure of biotin ligase from mycobacterium2 tuberculosis 21 d1biaa3 not modelled 95.4 23 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Biotin holoenzyme synthetase 22 c2qq4A_ not modelled 90.5 18 PDB header:metal binding protein Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu; PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8 23 d1t3qc1 not modelled 84.0 9 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 24 d1jroa3 not modelled 82.9 18 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 25 d1n62c1 not modelled 80.1 14 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 26 d1ffvc1 not modelled 80.1 16 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 27 d1v97a4 not modelled 74.7 11 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 28 d1rm6b1 not modelled 73.7 17 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 29 c2w3rG_ not modelled 67.0 18 PDB header:oxidoreductase Chain: G: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine 30 d1knxa1 not modelled 64.6 7 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:HPr kinase/phoshatase HprK N-terminal domain 31 d1xjsa_ not modelled 54.2 7 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 32 d1ko7a1 not modelled 51.1 18 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:HPr kinase/phoshatase HprK N-terminal domain 33 c1ybxA_ not modelled 49.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: conserved hypothetical protein cth-383 from clostridium thermocellum 34 c3hrdC_ not modelled 49.7 14 PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 35 d1su0b_ not modelled 48.1 10 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 36 c1knxF_ not modelled 46.9 7 PDB header:transferase/hydrolase Chain: F: PDB Molecule:probable hpr(ser) kinase/phosphatase; PDBTitle: hpr kinase/phosphatase from mycoplasma pneumoniae 37 c1ko7B_ not modelled 46.8 17 PDB header:transferase,hydrolase Chain: B: PDB Molecule:hpr kinase/phosphatase; PDBTitle: x-ray structure of the hpr kinase/phosphatase from2 staphylococcus xylosus at 1.95 a resolution 38 d1yq9h1 not modelled 46.6 25 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 39 d2brfa1 not modelled 44.5 19 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 40 c2z7eB_ not modelled 44.4 17 PDB header:biosynthetic protein Chain: B: PDB Molecule:nifu-like protein; PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster 41 d1e3db_ not modelled 43.3 18 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 42 d1cc1l_ not modelled 43.3 19 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 43 d1frfl_ not modelled 42.9 20 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 44 c1rm6E_ not modelled 40.9 20 PDB header:oxidoreductase Chain: E: PDB Molecule:4-hydroxybenzoyl-coa reductase beta subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 45 d1wuil1 not modelled 40.3 21 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 46 d2ddza1 not modelled 38.5 27 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:PH0223-like 47 c2grvC_ not modelled 37.5 9 PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw 48 c3myrB_ not modelled 35.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:nickel-dependent hydrogenase large subunit; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 49 d2a1ja1 not modelled 34.9 20 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 50 c1ffuF_ not modelled 33.0 18 PDB header:hydrolase Chain: F: PDB Molecule:cutm, flavoprotein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 51 c1t3qF_ not modelled 32.6 8 PDB header:oxidoreductase Chain: F: PDB Molecule:quinoline 2-oxidoreductase medium subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 52 c3o6uB_ not modelled 32.4 30 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein cpe2226; PDBTitle: crystal structure of cpe2226 protein from clostridium perfringens.2 northeast structural genomics consortium target cpr195 53 c3ry3B_ not modelled 31.5 9 PDB header:transport protein Chain: B: PDB Molecule:putative solute-binding protein; PDBTitle: putative solute-binding protein from yersinia pestis. 54 d1xoca1 not modelled 31.2 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 55 c3lvuB_ not modelled 29.1 21 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi 56 c2kzxA_ not modelled 27.4 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of a3dht5 from clostridium thermocellum,2 northeast structural genomics consortium target cmr116 57 d1u07a_ not modelled 27.3 15 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 58 c1h2aL_ not modelled 26.3 22 PDB header:oxidoreductase Chain: L: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris 59 d1p30a1 not modelled 25.0 15 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group II dsDNA viruses VP Family:Adenovirus hexon 60 c3uotB_ not modelled 24.5 13 PDB header:cell cycle Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1; PDBTitle: crystal structure of mdc1 fha domain in complex with a phosphorylated2 peptide from the mdc1 n-terminus 61 d1zlqa1 not modelled 23.5 9 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 62 c2o7jA_ not modelled 22.8 12 PDB header:sugar binding protein Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic PDBTitle: the x-ray crystal structure of a thermophilic cellobiose2 binding protein bound with cellopentaose 63 c2kklA_ not modelled 22.4 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 64 d1wh9a_ not modelled 22.3 14 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 65 c2wpnB_ not modelled 22.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit, PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 66 c1n62C_ not modelled 21.7 14 PDB header:oxidoreductase Chain: C: PDB Molecule:carbon monoxide dehydrogenase medium chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state 67 d1puga_ not modelled 21.3 14 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 68 d1r9pa_ not modelled 20.2 17 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 69 c2k9kA_ not modelled 17.1 16 PDB header:metal transport Chain: A: PDB Molecule:tonb2; PDBTitle: molecular characterization of the tonb2 protein from vibrio2 anguillarum 70 c3iz5s_ not modelled 17.0 12 PDB header:ribosome Chain: S: PDB Molecule:60s ribosomal protein l18a (l18ae); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 71 d2gskb1 not modelled 16.9 15 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 72 c3izcs_ not modelled 16.3 16 PDB header:ribosome Chain: S: PDB Molecule:60s ribosomal protein rpl20 (l18ae); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 73 c1wygA_ not modelled 16.0 9 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) 74 d1j8ba_ not modelled 16.0 16 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 75 c1ztyA_ not modelled 15.9 13 PDB header:sugar binding protein, signaling protein Chain: A: PDB Molecule:chitin oligosaccharide binding protein; PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein 76 c2hw4A_ not modelled 14.9 15 PDB header:structural genomics, hydrolase Chain: A: PDB Molecule:14 kda phosphohistidine phosphatase; PDBTitle: crystal structure of human phosphohistidine phosphatase 77 c2vqzB_ not modelled 14.5 18 PDB header:transcription Chain: B: PDB Molecule:polymerase basic protein 2; PDBTitle: structure of the cap-binding domain of influenza virus2 polymerase subunit pb2 with bound m7gtp 78 d1pugb_ not modelled 14.3 14 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 79 c2a5wC_ not modelled 14.2 10 PDB header:oxidoreductase Chain: C: PDB Molecule:sulfite reductase, desulfoviridin-type subunit gamma PDBTitle: crystal structure of the oxidized gamma-subunit of the dissimilatory2 sulfite reductase (dsrc) from archaeoglobus fulgidus 80 d1f0xa2 not modelled 14.2 7 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 81 d2hw4a1 not modelled 13.9 15 Fold:PHP14-like Superfamily:PHP14-like Family:Janus/Ocnus 82 c1vjqB_ not modelled 13.9 19 PDB header:structural genomics, de novo protein Chain: B: PDB Molecule:designed protein; PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability. 83 d2gmha2 not modelled 13.7 17 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:Electron transfer flavoprotein-ubiquinone oxidoreductase-like 84 c2jpeA_ not modelled 13.7 16 PDB header:transcription Chain: A: PDB Molecule:nuclear inhibitor of protein phosphatase 1; PDBTitle: fha domain of nipp1 85 d1wfza_ not modelled 13.3 22 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 86 c3t66A_ not modelled 12.6 11 PDB header:transport protein Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans 87 d1yjma1 not modelled 12.3 18 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 88 c2kzwA_ not modelled 12.1 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of q8psa4 from methanosarcina mazei, northeast2 structural genomics consortium target mar143a 89 c3ftoA_ not modelled 11.8 10 PDB header:peptide binding protein Chain: A: PDB Molecule:oligopeptide-binding protein oppa; PDBTitle: crystal structure of oppa in a open conformation 90 d2ji7a1 not modelled 11.6 12 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 91 c2x8xX_ not modelled 11.1 21 PDB header:chaperone Chain: X: PDB Molecule:tlr1789 protein; PDBTitle: structure of the n-terminal domain of omp85 from the2 thermophilic cyanobacterium thermosynechococcus elongatus 92 d1b4ra_ not modelled 11.0 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:PKD domain Family:PKD domain 93 d2q4ma1 not modelled 10.9 15 Fold:Tubby C-terminal domain-like Superfamily:Tubby C-terminal domain-like Family:At5g01750-like 94 c1zxuA_ not modelled 10.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:at5g01750 protein; PDBTitle: x-ray structure of protein from arabidopsis thaliana2 at5g01750 95 c2pmyB_ not modelled 10.6 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ras and ef-hand domain-containing protein; PDBTitle: ef-hand domain of human rasef 96 c2grxC_ not modelled 10.5 16 PDB header:metal transport Chain: C: PDB Molecule:protein tonb; PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome 97 c3dclC_ not modelled 10.3 27 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:tm1086; PDBTitle: crystal structure of tm1086 98 c1yj5C_ not modelled 10.2 17 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 99 d2ihta1 not modelled 9.5 12 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0