Email l.a.kelley@imperial.ac.uk Description P68739 Date Thu Jan 5 12:11:10 GMT 2012 Unique Job ID 80bb35b2e99fdc42

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3gocB_ 100.0 35 PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease v (sav1684) from streptomyces2 avermitilis. northeast structural genomics consortium target svr196 2 c3ga2A_ 100.0 26 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease_v (bsu36170) from2 bacillus subtilis, northeast structural genomics3 consortium target sr624 3 c2w36B_ 100.0 38 PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: structures of endonuclease v with dna reveal initiation of2 deaminated adenine repair 4 c2qh9B_ 98.5 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0215 protein af_1433; PDBTitle: the crystal structure of a protein of unknown function from2 archaeoglobus fulgidus dsm 4304 5 c2nrzB_ 97.9 26 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 6 c3c65A_ 97.7 19 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of bacillus stearothermophilus uvrc 5'2 endonuclease domain 7 c2nrrA_ 96.2 27 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal rnaseh endonuclase2 domain of uvrc 8 c1u04A_ 94.4 14 PDB header:hydrolase/gene regulation Chain: A: PDB Molecule:hypothetical protein pf0537; PDBTitle: crystal structure of full length argonaute from pyrococcus furiosus 9 c2f8sA_ 93.2 16 PDB header:rna binding protein/rna Chain: A: PDB Molecule:argonaute protein; PDBTitle: crystal structure of aa-ago with externally-bound sirna 10 d1u04a2 85.8 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:PIWI domain 11 d1yvua2 85.4 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:PIWI domain 12 d3bzka5 81.3 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 13 c3taiB_ 71.3 14 PDB header:hydrolase Chain: B: PDB Molecule:dna double-strand break repair protein nura; PDBTitle: crystal structure of nura 14 c2zkqb_ 60.7 27 PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 15 c3bchA_ 58.8 24 PDB header:cell adhesion, ribosomal protein Chain: A: PDB Molecule:40s ribosomal protein sa; PDBTitle: crystal structure of the human laminin receptor precursor 16 d1efva2 56.4 20 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:C-terminal domain of the electron transfer flavoprotein alpha subunit 17 c2oceA_ 54.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 18 c1efpC_ 49.6 17 PDB header:electron transport Chain: C: PDB Molecule:protein (electron transfer flavoprotein); PDBTitle: electron transfer flavoprotein (etf) from paracoccus2 denitrificans 19 c3bbnB_ 47.0 23 PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 20 c2obnA_ 46.2 14 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution 21 d1efpa2 not modelled 45.5 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:C-terminal domain of the electron transfer flavoprotein alpha subunit 22 d1vi6a_ not modelled 44.6 29 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 23 c3rggD_ not modelled 41.6 11 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein; PDBTitle: crystal structure of treponema denticola pure bound to air 24 c3cvoA_ not modelled 36.8 31 PDB header:transferase Chain: A: PDB Molecule:methyltransferase-like protein of unknown function; PDBTitle: crystal structure of a methyltransferase-like protein (spo2022) from2 silicibacter pomeroyi dss-3 at 1.80 a resolution 25 d1kcfa2 not modelled 35.7 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Mitochondrial resolvase ydc2 catalytic domain 26 c3izbA_ not modelled 35.3 29 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein rps0 (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 27 c2qmoA_ not modelled 32.8 22 PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of dethiobiotin synthetase (biod) from helicobacter2 pylori 28 c2etjA_ not modelled 31.8 57 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease hii; PDBTitle: crystal structure of ribonuclease hii (ec 3.1.26.4) (rnase hii)2 (tm0915) from thermotoga maritima at 1.74 a resolution 29 d2etja1 not modelled 31.8 57 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 30 c1jb0M_ not modelled 31.2 50 PDB header:photosynthesis Chain: M: PDB Molecule:photosystem 1 reaction centre subunit xii; PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria 31 d1jb0m_ not modelled 31.2 50 Fold:Single transmembrane helix Superfamily:Subunit XII of photosystem I reaction centre, PsaM Family:Subunit XII of photosystem I reaction centre, PsaM 32 c3c6aA_ not modelled 29.2 16 PDB header:viral protein Chain: A: PDB Molecule:terminase large subunit; PDBTitle: crystal structure of the rb49 gp17 nuclease domain 33 d2uubb1 not modelled 29.0 23 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 34 d3clsd2 not modelled 28.7 20 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:C-terminal domain of the electron transfer flavoprotein alpha subunit 35 c1xuzA_ not modelled 28.5 24 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 36 c2f1rA_ not modelled 26.3 24 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb) 37 d2gy9b1 not modelled 25.2 16 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 38 c1s1hB_ not modelled 24.4 30 PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 39 d2zdra2 not modelled 21.7 27 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 40 c3iz6A_ not modelled 19.8 26 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 41 d2foka4 not modelled 19.8 33 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease FokI, C-terminal (catalytic) domain 42 d1io2a_ not modelled 19.7 28 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 43 c2xznB_ not modelled 16.6 26 PDB header:ribosome Chain: B: PDB Molecule:rps0e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 44 d2g0ta1 not modelled 14.6 28 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 45 c1fokA_ not modelled 13.4 26 PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (foki restriction endonucleas); PDBTitle: structure of restriction endonuclease foki bound to dna 46 c3jvpA_ not modelled 13.2 18 PDB header:transferase Chain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans 47 d1qcza_ not modelled 12.7 19 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 48 c2ivoC_ not modelled 12.5 16 PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein 49 c1glbG_ not modelled 12.3 17 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 50 d2p3ra1 not modelled 12.0 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 51 c3kgkA_ not modelled 11.7 31 PDB header:chaperone Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd; PDBTitle: crystal structure of arsd 52 d1o66a_ not modelled 11.6 35 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 53 c2ygkA_ not modelled 11.2 16 PDB header:hydrolase Chain: A: PDB Molecule:nura; PDBTitle: crystal structure of the nura nuclease from sulfolobus solfataricus 54 c3ktbD_ not modelled 10.6 15 PDB header:transcription regulator Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor; PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482 55 d1k38a_ not modelled 10.0 10 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 56 d1g6sa_ not modelled 8.8 11 Fold:IF3-like Superfamily:EPT/RTPC-like Family:Enolpyruvate transferase, EPT 57 d2d0oa2 not modelled 8.6 35 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ATPase domain of dehydratase reactivase alpha subunit 58 d1k1sa1 not modelled 8.6 21 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 59 d2ayia1 not modelled 8.4 11 Fold:Thermophilic metalloprotease-like Superfamily:Thermophilic metalloprotease-like Family:Thermophilic metalloprotease (M29) 60 d1w9ha1 not modelled 8.4 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:PIWI domain 61 c3ezkB_ not modelled 8.0 11 PDB header:hydrolase Chain: B: PDB Molecule:dna packaging protein gp17; PDBTitle: bacteriophage t4 gp17 motor assembly based on crystal2 structures and cryo-em reconstructions 62 c3oirA_ not modelled 7.9 12 PDB header:transport protein Chain: A: PDB Molecule:sulfate transporter sulfate transporter family protein; PDBTitle: crystal structure of sulfate transporter family protein from wolinella2 succinogenes 63 c2dcqA_ not modelled 7.7 19 PDB header:unknown function Chain: A: PDB Molecule:putative protein at4g01050; PDBTitle: fully automated nmr structure determination of the2 rhodanese homology domain at4g01050(175-295) from3 arabidopsis thaliana 64 d1o4va_ not modelled 7.7 15 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 65 d1pswa_ not modelled 7.7 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:ADP-heptose LPS heptosyltransferase II 66 d1nija1 not modelled 7.6 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 67 d1gzga_ not modelled 7.6 24 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 68 d2b7ta1 not modelled 7.6 9 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 69 c1zu4A_ not modelled 7.4 19 PDB header:protein transport Chain: A: PDB Molecule:ftsy; PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212 70 c2wcvI_ not modelled 7.4 27 PDB header:isomerase Chain: I: PDB Molecule:l-fucose mutarotase; PDBTitle: crystal structure of bacterial fucu 71 c3orsD_ not modelled 7.3 17 PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus 72 c3cf4G_ not modelled 7.3 21 PDB header:oxidoreductase Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 73 c3fmfA_ not modelled 7.1 13 PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate 74 c2iuwA_ not modelled 7.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:alkylated repair protein alkb homolog 3; PDBTitle: crystal structure of human abh3 in complex with iron ion2 and 2-oxoglutarate 75 c3trhI_ not modelled 7.0 29 PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii 76 c3gbtA_ not modelled 6.9 18 PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus 77 c1u8xX_ not modelled 6.8 15 PDB header:hydrolase Chain: X: PDB Molecule:maltose-6'-phosphate glucosidase; PDBTitle: crystal structure of glva from bacillus subtilis, a metal-requiring,2 nad-dependent 6-phospho-alpha-glucosidase 78 c2a6aB_ not modelled 6.7 22 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein tm0874; PDBTitle: crystal structure of glycoprotein endopeptidase (tm0874) from2 thermotoga maritima at 2.50 a resolution 79 c2odaB_ not modelled 6.5 32 PDB header:protein binding Chain: B: PDB Molecule:hypothetical protein pspto_2114; PDBTitle: crystal structure of pspto_2114 80 d1xo1a2 not modelled 6.5 31 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 81 c3ezfA_ not modelled 6.2 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:para; PDBTitle: partition protein 82 d2iuwa1 not modelled 6.1 20 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:AlkB-like 83 c3n53B_ not modelled 6.0 39 PDB header:transcription Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase; PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus 84 d1rf6a_ not modelled 6.0 17 Fold:IF3-like Superfamily:EPT/RTPC-like Family:Enolpyruvate transferase, EPT 85 c3iabB_ not modelled 5.9 30 PDB header:hydrolase/rna Chain: B: PDB Molecule:ribonucleases p/mrp protein subunit pop7; PDBTitle: crystal structure of rnase p /rnase mrp proteins pop6, pop72 in a complex with the p3 domain of rnase mrp rna 86 d1xmpa_ not modelled 5.9 17 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 87 d1jx4a1 not modelled 5.9 14 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 88 d1oy0a_ not modelled 5.9 22 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 89 c3odhB_ not modelled 5.7 22 PDB header:hydrolase/dna Chain: B: PDB Molecule:okrai endonuclease; PDBTitle: structure of okrai/dna complex 90 c2d0bA_ not modelled 5.7 10 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease hiii; PDBTitle: crystal structure of bst-rnase hiii in complex with mg2+ 91 d1osna_ not modelled 5.6 26 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 92 c1qeyA_ not modelled 5.5 28 PDB header:gene regulation Chain: A: PDB Molecule:protein (regulatory protein mnt); PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange 93 c1qeyD_ not modelled 5.5 28 PDB header:gene regulation Chain: D: PDB Molecule:protein (regulatory protein mnt); PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange 94 c1qeyB_ not modelled 5.5 28 PDB header:gene regulation Chain: B: PDB Molecule:protein (regulatory protein mnt); PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange 95 c1qeyC_ not modelled 5.5 28 PDB header:gene regulation Chain: C: PDB Molecule:protein (regulatory protein mnt); PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange 96 d1bdoa_ not modelled 5.4 23 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 97 c3g25B_ not modelled 5.4 18 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 98 d1u11a_ not modelled 5.3 15 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 99 c2fw9A_ not modelled 5.3 17 PDB header:lyase Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8