Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77174
DateThu Jan 5 12:25:59 GMT 2012
Unique Job ID7f3c96e86f1a1294

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1vz0B_
Top template information
PDB header:nuclear protein
Chain: B: PDB Molecule:chromosome partitioning protein parb;
PDBTitle: chromosome segregation protein spo0j from thermus2 thermophilus
Confidence and coverage
Confidence:100.0% Coverage: 73%
152 residues ( 73% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MGDTMQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMP
Secondary structure 


















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Disorder  ????













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   .........70.........80.........90.........100.........110.........120
Sequence  NDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLR
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Disorder 



?
??
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????????
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   .........130.........140.........150.........160.........170.........180
Sequence  LKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELSQLGWDDNKIGKELGMD
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Disorder  ?
























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   .........190.........200.........
Sequence  SDEVLRLKQINGLQELFADRQYSRAWTVK
Secondary structure 














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Disorder 







??????






????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1vz0 chain B

3D model

Region: 50 - 208
Aligned: 152
Modelled: 159
Confidence: 100.0%
Identity: 18%
PDB header:nuclear protein
Chain: B: PDB Molecule:chromosome partitioning protein parb;
PDBTitle: chromosome segregation protein spo0j from thermus2 thermophilus

Phyre2

PDB 1vk1 chain A

3D model

Region: 53 - 195
Aligned: 137
Modelled: 143
Confidence: 99.9%
Identity: 14%
Fold: ParB/Sulfiredoxin
Superfamily: ParB/Sulfiredoxin
Family: Hypothetical protein PF0380

Phyre2

PDB 1vz0 chain A domain 2

3D model

Region: 50 - 148
Aligned: 92
Modelled: 99
Confidence: 99.9%
Identity: 23%
Fold: ParB/Sulfiredoxin
Superfamily: ParB/Sulfiredoxin
Family: ParB-like nuclease domain

Phyre2

PDB 1xw3 chain A domain 1

3D model

Region: 46 - 147
Aligned: 94
Modelled: 102
Confidence: 99.8%
Identity: 18%
Fold: ParB/Sulfiredoxin
Superfamily: ParB/Sulfiredoxin
Family: Sulfiredoxin-like

Phyre2

PDB 2b6f chain A domain 1

3D model

Region: 46 - 147
Aligned: 93
Modelled: 102
Confidence: 99.8%
Identity: 17%
Fold: ParB/Sulfiredoxin
Superfamily: ParB/Sulfiredoxin
Family: Sulfiredoxin-like

Phyre2

PDB 1r71 chain A

3D model

Region: 141 - 199
Aligned: 59
Modelled: 59
Confidence: 99.3%
Identity: 19%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: KorB DNA-binding domain-like
Family: KorB DNA-binding domain-like

Phyre2

PDB 1r71 chain B

3D model

Region: 139 - 199
Aligned: 61
Modelled: 61
Confidence: 99.3%
Identity: 20%
PDB header:transcription/dna
Chain: B: PDB Molecule:transcriptional repressor protein korb;
PDBTitle: crystal structure of the dna binding domain of korb in2 complex with the operator dna

Phyre2

PDB 1vz0 chain A domain 1

3D model

Region: 149 - 199
Aligned: 51
Modelled: 51
Confidence: 98.7%
Identity: 10%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: KorB DNA-binding domain-like
Family: KorB DNA-binding domain-like

Phyre2

PDB 3mky chain P

3D model

Region: 150 - 199
Aligned: 50
Modelled: 50
Confidence: 98.0%
Identity: 6%
PDB header:dna binding protein/dna
Chain: P: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form

Phyre2

PDB 3mkz chain U

3D model

Region: 150 - 199
Aligned: 50
Modelled: 50
Confidence: 97.9%
Identity: 6%
PDB header:dna-binding protein/dna
Chain: U: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-272)-18mer complex, p21 form

Phyre2

PDB 2hwj chain A domain 1

3D model

Region: 46 - 169
Aligned: 98
Modelled: 106
Confidence: 97.5%
Identity: 9%
Fold: ParB/Sulfiredoxin
Superfamily: ParB/Sulfiredoxin
Family: Atu1540-like

Phyre2

PDB 2w48 chain D

3D model

Region: 152 - 189
Aligned: 38
Modelled: 38
Confidence: 96.3%
Identity: 21%
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae

Phyre2

PDB 1u78 chain A

3D model

Region: 148 - 189
Aligned: 42
Modelled: 42
Confidence: 95.6%
Identity: 7%
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna

Phyre2

PDB 2x48 chain B

3D model

Region: 151 - 188
Aligned: 38
Modelled: 38
Confidence: 93.7%
Identity: 21%
PDB header:viral protein
Chain: B: PDB Molecule:cag38821;
PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1

Phyre2

PDB 2elh chain A

3D model

Region: 148 - 189
Aligned: 41
Modelled: 42
Confidence: 93.7%
Identity: 5%
PDB header:dna binding protein
Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa

Phyre2

PDB 1pdn chain C

3D model

Region: 149 - 189
Aligned: 40
Modelled: 41
Confidence: 93.5%
Identity: 18%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Paired domain

Phyre2

PDB 3ivp chain D

3D model

Region: 148 - 187
Aligned: 40
Modelled: 40
Confidence: 93.4%
Identity: 13%
PDB header:dna binding protein
Chain: D: PDB Molecule:putative transposon-related dna-binding protein;
PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630.

Phyre2

PDB 2o38 chain A domain 1

3D model

Region: 154 - 187
Aligned: 34
Modelled: 34
Confidence: 93.3%
Identity: 12%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: NE1354

Phyre2

PDB 2o38 chain A

3D model

Region: 154 - 187
Aligned: 34
Modelled: 34
Confidence: 93.3%
Identity: 12%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: putative xre family transcriptional regulator

Phyre2

PDB 2a6c chain A domain 1

3D model

Region: 154 - 187
Aligned: 34
Modelled: 34
Confidence: 93.1%
Identity: 24%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: NE1354

Phyre2
1

c1vz0B_
2

d1vk1a_
3

d1vz0a2
4

d1xw3a1
5

d2b6fa1
6

d1r71a_
7

c1r71B_
8

d1vz0a1
9

c3mkyP_
10

c3mkzU_
11

d2hwja1
12

c2w48D_
13

c1u78A_
14

c2x48B_
15

c2elhA_
16

d1pdnc_
17

c3ivpD_
18

d2o38a1
19

c2o38A_
20

d2a6ca1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1vz0B_



100.0 18 PDB header:nuclear protein
Chain: B: PDB Molecule:chromosome partitioning protein parb;
PDBTitle: chromosome segregation protein spo0j from thermus2 thermophilus
2d1vk1a_



99.9 14 Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:Hypothetical protein PF0380
3d1vz0a2



99.9 23 Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:ParB-like nuclease domain
4d1xw3a1



99.8 18 Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:Sulfiredoxin-like
5d2b6fa1



99.8 17 Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:Sulfiredoxin-like
6d1r71a_



99.3 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
7c1r71B_



99.3 20 PDB header:transcription/dna
Chain: B: PDB Molecule:transcriptional repressor protein korb;
PDBTitle: crystal structure of the dna binding domain of korb in2 complex with the operator dna
8d1vz0a1



98.7 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
9c3mkyP_



98.0 6 PDB header:dna binding protein/dna
Chain: P: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form
10c3mkzU_



97.9 6 PDB header:dna-binding protein/dna
Chain: U: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-272)-18mer complex, p21 form
11d2hwja1



97.5 9 Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:Atu1540-like
12c2w48D_



96.3 21 PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
13c1u78A_



95.6 7 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
14c2x48B_



93.7 21 PDB header:viral protein
Chain: B: PDB Molecule:cag38821;
PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1
15c2elhA_



93.7 5 PDB header:dna binding protein
Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
16d1pdnc_



93.5 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
17c3ivpD_



93.4 13 PDB header:dna binding protein
Chain: D: PDB Molecule:putative transposon-related dna-binding protein;
PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630.
18d2o38a1



93.3 12 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
19c2o38A_



93.3 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: putative xre family transcriptional regulator
20d2a6ca1



93.1 24 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
21d1k78a1



not modelled 93.1 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
22c3eusB_



not modelled 92.7 12 PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
23d2ofya1



not modelled 92.4 10 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
24c3e7lD_



not modelled 92.3 15 PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
25c3dnvB_



not modelled 92.2 16 PDB header:transcription/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator hipb;
PDBTitle: mdt protein
26c1umqA_



not modelled 91.8 13 PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
27d1umqa_



not modelled 91.8 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
28c3pxpA_



not modelled 91.8 13 PDB header:transcription regulator
Chain: A: PDB Molecule:helix-turn-helix domain protein;
PDBTitle: crystal structure of a pas and dna binding domain containing protein2 (caur_2278) from chloroflexus aurantiacus j-10-fl at 2.30 a3 resolution
29d1hlva1



not modelled 91.7 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
30c3t76A_



not modelled 91.7 9 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
31d1a9xa1



not modelled 91.5 21 Fold:Carbamoyl phosphate synthetase, large subunit connection domain
Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain
Family:Carbamoyl phosphate synthetase, large subunit connection domain
32c6paxA_



not modelled 91.5 20 PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
33c1y9qA_



not modelled 91.4 9 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
34d1bw6a_



not modelled 91.3 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
35d6paxa1



not modelled 91.0 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
36d1fipa_



not modelled 90.7 5 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
37c2jvlA_



not modelled 90.4 18 PDB header:transcription
Chain: A: PDB Molecule:trmbf1;
PDBTitle: nmr structure of the c-terminal domain of mbf1 of trichoderma reesei
38d1etob_



not modelled 90.3 5 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
39c3op9A_



not modelled 90.3 17 PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua
40c2ef8A_



not modelled 90.3 10 PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of c.ecot38is
41c3f6wE_



not modelled 90.2 21 PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
42d1y7ya1



not modelled 90.2 20 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
43c2bnoA_



not modelled 90.1 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.
44d1ntca_



not modelled 90.0 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
45c3fmyA_



not modelled 90.0 13 PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa
PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
46c2gm4B_



not modelled 90.0 20 PDB header:recombination, dna
Chain: B: PDB Molecule:transposon gamma-delta resolvase;
PDBTitle: an activated, tetrameric gamma-delta resolvase: hin chimaera bound to2 cleaved dna
47d1rioa_



not modelled 89.7 17 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
48c3omtA_



not modelled 89.7 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae.
49c2ppxA_



not modelled 89.7 4 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1735;
PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens
50d2ppxa1



not modelled 89.7 4 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
51c2r0qF_



not modelled 89.5 31 PDB header:recombination/dna
Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3;
PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex
52c3b7hA_



not modelled 89.3 24 PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11
53d1etxa_



not modelled 89.2 5 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
54c3bs3A_



not modelled 88.9 11 PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
55c3cecA_



not modelled 88.4 14 PDB header:transcription
Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system;
PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution
56c2q0oA_



not modelled 88.3 11 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
57c3f52A_



not modelled 88.3 9 PDB header:transcription activator
Chain: A: PDB Molecule:clp gene regulator (clgr);
PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum
58d1utxa_



not modelled 88.1 4 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
59c1b0nA_



not modelled 88.0 6 PDB header:transcription regulator
Chain: A: PDB Molecule:protein (sinr protein);
PDBTitle: sinr protein/sini protein complex
60c3clcC_



not modelled 88.0 9 PDB header:transcription regulator/dna
Chain: C: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator
61d1sq8a_



not modelled 87.9 26 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
62d1r69a_



not modelled 87.9 21 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
63d2b5aa1



not modelled 87.8 9 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
64c3sztB_



not modelled 87.4 17 PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
65d1y9qa1



not modelled 87.3 9 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Probable transcriptional regulator VC1968, N-terminal domain
66c2ebyA_



not modelled 87.3 24 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
67c3kxaD_



not modelled 87.3 14 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae
68d1x57a1



not modelled 87.2 7 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:EDF1-like
69d1adra_



not modelled 87.0 17 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
70d1b0na2



not modelled 86.9 10 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
71d2jn6a1



not modelled 86.8 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Cgl2762-like
72d2icta1



not modelled 86.8 19 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
73c3mlfC_



not modelled 86.5 18 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: putative transcriptional regulator from staphylococcus aureus.
74d1lmb3_



not modelled 86.5 18 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
75c2cg4B_



not modelled 86.3 15 PDB header:transcription
Chain: B: PDB Molecule:regulatory protein asnc;
PDBTitle: structure of e.coli asnc
76d1g2ha_



not modelled 86.1 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
77d1fsea_



not modelled 86.0 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
78c3trbA_



not modelled 85.9 15 PDB header:dna binding protein
Chain: A: PDB Molecule:virulence-associated protein i;
PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii
79d1tc3c_



not modelled 85.7 7 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
80c2xcjB_



not modelled 85.5 9 PDB header:viral protein
Chain: B: PDB Molecule:c protein;
PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2
81c1zljE_



not modelled 85.4 11 PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
82d1llib_



not modelled 85.2 15 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
83c2ewtA_



not modelled 85.0 15 PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of the dna-binding domain of bldd
84c3hugA_



not modelled 85.0 15 PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
85d2cg4a1



not modelled 84.9 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
86c3mzyA_



not modelled 84.6 14 PDB header:rna binding protein
Chain: A: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
87d2croa_



not modelled 84.5 6 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
88c2kpjA_



not modelled 84.4 8 PDB header:transcription regulator
Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa;
PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a
89c3gn5B_



not modelled 84.4 15 PDB header:dna binding protein
Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021);
PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
90c2fjrB_



not modelled 84.3 9 PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186
91c2p6tH_



not modelled 84.1 21 PDB header:transcription
Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family;
PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis
92d2cyya1



not modelled 84.0 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
93c1x3uA_



not modelled 83.9 14 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein fixj;
PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
94d1a04a1



not modelled 83.9 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
95c1rp3G_



not modelled 83.8 14 PDB header:transcription
Chain: G: PDB Molecule:rna polymerase sigma factor sigma-28 (flia);
PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma2 complex, sigma-28/flgm
96d2r1jl1



not modelled 83.8 17 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
97c2dbbA_



not modelled 83.8 15 PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
98c2krfB_



not modelled 83.6 9 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
99c3qp5C_



not modelled 83.4 9 PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
100c3frwF_



not modelled 83.2 8 PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative trp repressor protein;
PDBTitle: crystal structure of putative trpr protein from ruminococcus obeum
101d1nera_



not modelled 83.1 5 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
102d1l3la1



not modelled 83.0 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
103c2vbzA_



not modelled 83.0 22 PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
104d1rp3a1



not modelled 82.9 36 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
105d1p4wa_



not modelled 82.8 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
106c2k27A_



not modelled 82.8 18 PDB header:transcription regulator
Chain: A: PDB Molecule:paired box protein pax-8;
PDBTitle: solution structure of human pax8 paired box domain
107c2wusR_



not modelled 82.4 9 PDB header:structural protein
Chain: R: PDB Molecule:putative uncharacterized protein;
PDBTitle: bacterial actin mreb assembles in complex with cell shape2 protein rodz
108c1hlvA_



not modelled 82.2 12 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
109c1h0mD_



not modelled 82.2 11 PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna
110d1s7oa_



not modelled 82.2 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
111c3i4pA_



not modelled 82.1 18 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, asnc family;
PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens
112c2jpcA_



not modelled 81.9 20 PDB header:dna binding protein
Chain: A: PDB Molecule:ssrb;
PDBTitle: ssrb dna binding protein
113d1trra_



not modelled 81.2 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:Trp repressor, TrpR
114c3fymA_



not modelled 81.2 13 PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the 1a structure of ymfm, a putative dna-binding membrane2 protein from staphylococcus aureus
115d2d1ha1



not modelled 81.0 5 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
116c3korD_



not modelled 80.4 15 PDB header:transcription
Chain: D: PDB Molecule:possible trp repressor;
PDBTitle: crystal structure of a putative trp repressor from staphylococcus2 aureus
117c3bdnB_



not modelled 80.4 15 PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor
118c2ia0A_



not modelled 80.4 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864;
PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864)
119c1or7A_



not modelled 79.8 8 PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-e factor;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
120d1i1ga1



not modelled 79.7 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0