Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP06616
DateThu Jan 5 10:59:16 GMT 2012
Unique Job ID7f2df7241a7153e6

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1egaB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era
Confidence and coverage
Confidence:100.0% Coverage: 97%
293 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY
Secondary structure 

























SS confidence 



























































Disorder  ???????




















































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   .........70.........80.........90.........100.........110.........120
Sequence  VDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVI
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Disorder 







???
















































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   .........130.........140.........150.........160.........170.........180
Sequence  LAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHF
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Disorder 























































???
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   .........190.........200.........210.........220.........230.........240
Sequence  PEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVERE
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Disorder  ?
?
























































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   .........250.........260.........270.........280.........290.........300
Sequence  GQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLGYVDD
Secondary structure 




















SS confidence 



























































Disorder 







?
































??????





??????
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   .
Sequence  L
Secondary structure 
SS confidence 
Disorder  ?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1ega chain B

3D model

Region: 4 - 296
Aligned: 293
Modelled: 293
Confidence: 100.0%
Identity: 100%
PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era

Phyre2

PDB 1wf3 chain A

3D model

Region: 4 - 299
Aligned: 293
Modelled: 296
Confidence: 100.0%
Identity: 38%
PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8

Phyre2

PDB 3iev chain A

3D model

Region: 5 - 298
Aligned: 294
Modelled: 294
Confidence: 100.0%
Identity: 38%
PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna

Phyre2

PDB 1wf3 chain A domain 2

3D model

Region: 182 - 299
Aligned: 118
Modelled: 118
Confidence: 100.0%
Identity: 38%
Fold: Alpha-lytic protease prodomain-like
Superfamily: Prokaryotic type KH domain (KH-domain type II)
Family: Prokaryotic type KH domain (KH-domain type II)

Phyre2

PDB 1ega chain A domain 2

3D model

Region: 183 - 295
Aligned: 113
Modelled: 113
Confidence: 100.0%
Identity: 100%
Fold: Alpha-lytic protease prodomain-like
Superfamily: Prokaryotic type KH domain (KH-domain type II)
Family: Prokaryotic type KH domain (KH-domain type II)

Phyre2

PDB 1ega chain A domain 1

3D model

Region: 4 - 182
Aligned: 179
Modelled: 179
Confidence: 100.0%
Identity: 100%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 1xzq chain A

3D model

Region: 10 - 211
Aligned: 197
Modelled: 198
Confidence: 100.0%
Identity: 26%
PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf

Phyre2

PDB 2e87 chain A

3D model

Region: 10 - 173
Aligned: 160
Modelled: 164
Confidence: 100.0%
Identity: 26%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp

Phyre2

PDB 1ni3 chain A domain 1

3D model

Region: 8 - 275
Aligned: 255
Modelled: 266
Confidence: 100.0%
Identity: 16%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 1wf3 chain A domain 1

3D model

Region: 4 - 182
Aligned: 176
Modelled: 179
Confidence: 99.9%
Identity: 34%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 3geh chain A

3D model

Region: 10 - 214
Aligned: 178
Modelled: 184
Confidence: 99.9%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn

Phyre2

PDB 1udx chain A

3D model

Region: 11 - 189
Aligned: 173
Modelled: 179
Confidence: 99.9%
Identity: 20%
PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8

Phyre2

PDB 1lnz chain A

3D model

Region: 11 - 185
Aligned: 171
Modelled: 175
Confidence: 99.9%
Identity: 22%
PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein

Phyre2

PDB 2hjg chain A

3D model

Region: 2 - 185
Aligned: 175
Modelled: 184
Confidence: 99.9%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp

Phyre2

PDB 3a1v chain B

3D model

Region: 10 - 200
Aligned: 180
Modelled: 191
Confidence: 99.9%
Identity: 18%
PDB header:transport protein
Chain: B: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form

Phyre2

PDB 1mky chain A

3D model

Region: 9 - 189
Aligned: 164
Modelled: 167
Confidence: 99.9%
Identity: 32%
PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains

Phyre2

PDB 3k53 chain B

3D model

Region: 10 - 199
Aligned: 182
Modelled: 190
Confidence: 99.9%
Identity: 20%
PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b;
PDBTitle: crystal structure of nfeob from p. furiosus

Phyre2

PDB 2bv3 chain A domain 2

3D model

Region: 11 - 174
Aligned: 154
Modelled: 164
Confidence: 99.9%
Identity: 20%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 2qth chain A

3D model

Region: 6 - 175
Aligned: 158
Modelled: 170
Confidence: 99.9%
Identity: 20%
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp

Phyre2

PDB 3lx8 chain A

3D model

Region: 10 - 215
Aligned: 198
Modelled: 206
Confidence: 99.9%
Identity: 18%
PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron uptake transporter protein b;
PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus

Phyre2
1

c1egaB_
2

c1wf3A_
3

c3ievA_
4

d1wf3a2
5

d1egaa2
6

d1egaa1
7

c1xzqA_
8

c2e87A_
9

d1ni3a1
10

d1wf3a1
11

c3gehA_
12

c1udxA_
13

c1lnzA_
14

c2hjgA_
15

c3a1vB_
16

c1mkyA_
17

c3k53B_
18

d2bv3a2
19

c2qthA_
20

c3lx8A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1egaB_



100.0 100 PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era
2c1wf3A_



100.0 38 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8
3c3ievA_



100.0 38 PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna
4d1wf3a2



100.0 38 Fold:Alpha-lytic protease prodomain-like
Superfamily:Prokaryotic type KH domain (KH-domain type II)
Family:Prokaryotic type KH domain (KH-domain type II)
5d1egaa2



100.0 100 Fold:Alpha-lytic protease prodomain-like
Superfamily:Prokaryotic type KH domain (KH-domain type II)
Family:Prokaryotic type KH domain (KH-domain type II)
6d1egaa1



100.0 100 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
7c1xzqA_



100.0 26 PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
8c2e87A_



100.0 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp
9d1ni3a1



100.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
10d1wf3a1



99.9 34 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
11c3gehA_



99.9 24 PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
12c1udxA_



99.9 20 PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8
13c1lnzA_



99.9 22 PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein
14c2hjgA_



99.9 19 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
15c3a1vB_



99.9 18 PDB header:transport protein
Chain: B: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form
16c1mkyA_



99.9 32 PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
17c3k53B_



99.9 20 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b;
PDBTitle: crystal structure of nfeob from p. furiosus
18d2bv3a2



99.9 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
19c2qthA_



99.9 20 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp
20c3lx8A_



99.9 18 PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron uptake transporter protein b;
PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus
21c1kk3A_



not modelled 99.9 21 PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+
22c3ibyA_



not modelled 99.9 16 PDB header:transport protein
Chain: A: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of cytosolic domain of l. pneumophila feob
23c1zo1I_



not modelled 99.9 20 PDB header:translation/rna
Chain: I: PDB Molecule:translation initiation factor 2;
PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
24c3md0A_



not modelled 99.9 17 PDB header:transport protein
Chain: A: PDB Molecule:arginine/ornithine transport system atpase;
PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein)
25c2wwwB_



not modelled 99.9 14 PDB header:transport protein
Chain: B: PDB Molecule:methylmalonic aciduria type a protein,
PDBTitle: crystal structure of methylmalonic acidemia type a protein
26d2dy1a2



not modelled 99.9 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
27d2qm8a1



not modelled 99.9 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
28c2xtpA_



not modelled 99.9 17 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of nucleotide-free human gimap2, amino2 acid residues 1-260
29c1wb1C_



not modelled 99.9 22 PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp
30c3i8sC_



not modelled 99.9 21 PDB header:transport protein
Chain: C: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of the cytosolic domain of e. coli feob, nucleotide-free2 form
31c3izyP_



not modelled 99.9 20 PDB header:rna, ribosomal protein
Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial;
PDBTitle: mammalian mitochondrial translation initiation factor 2
32c2ywfA_



not modelled 99.9 17 PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
33c3nxsA_



not modelled 99.9 15 PDB header:transport protein
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp
34d2p67a1



not modelled 99.9 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
35c1g7tA_



not modelled 99.9 24 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if2/eif5b;
PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
36c3qq5A_



not modelled 99.9 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:small gtp-binding protein;
PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf
37c3pqcA_



not modelled 99.9 25 PDB header:hydrolase
Chain: A: PDB Molecule:probable gtp-binding protein engb;
PDBTitle: crystal structure of thermotoga maritima ribosome biogenesis gtp-2 binding protein engb (ysxc/yiha) in complex with gdp
38c3degC_



not modelled 99.9 21 PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
39d1kk1a3



not modelled 99.9 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
40c2wjjB_



not modelled 99.8 21 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b homolog;
PDBTitle: structure and function of the feob g-domain from2 methanococcus jannaschii
41c2j3eA_



not modelled 99.8 16 PDB header:protein transport
Chain: A: PDB Molecule:t7i23.11 protein;
PDBTitle: dimerization is important for the gtpase activity of2 chloroplast translocon components attoc33 and pstoc159
42d2gj8a1



not modelled 99.8 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
43c2xtnA_



not modelled 99.8 17 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of gtp-bound human gimap2, amino acid2 residues 1-234
44d1tq4a_



not modelled 99.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
45d1f60a3



not modelled 99.8 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
46c2plfA_



not modelled 99.8 24 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.
47d1lnza2



not modelled 99.8 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
48d1svia_



not modelled 99.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
49c2qu8A_



not modelled 99.8 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nucleolar gtp-binding protein 1;
PDBTitle: crystal structure of putative nucleolar gtp-binding protein 1 pff0625w2 from plasmodium falciparum
50d1jala1



not modelled 99.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
51d1d2ea3



not modelled 99.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
52c2bvnB_



not modelled 99.8 20 PDB header:elongation factor
Chain: B: PDB Molecule:elongation factor tu;
PDBTitle: e. coli ef-tu:gdpnp in complex with the antibiotic2 enacyloxin iia
53d1zunb3



not modelled 99.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
54c2dykB_



not modelled 99.8 29 PDB header:ribosome
Chain: B: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of n-terminal gtp-binding domain of enga from2 thermus thermophilus hb8
55d1h65a_



not modelled 99.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
56c3a1wA_



not modelled 99.8 21 PDB header:transport protein
Chain: A: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the g domain of t. maritima feob iron2 iransporter
57c1d2eA_



not modelled 99.8 21 PDB header:rna binding protein
Chain: A: PDB Molecule:elongation factor tu (ef-tu);
PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
58d2c78a3



not modelled 99.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
59d1wb1a4



not modelled 99.8 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
60c1mj1A_



not modelled 99.8 16 PDB header:ribosome
Chain: A: PDB Molecule:elongation factor tu;
PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome
61c2qptA_



not modelled 99.8 17 PDB header:endocytosis
Chain: A: PDB Molecule:eh domain-containing protein-2;
PDBTitle: crystal structure of an ehd atpase involved in membrane remodelling
62c1ni3A_



not modelled 99.8 23 PDB header:hydrolase
Chain: A: PDB Molecule:ychf gtp-binding protein;
PDBTitle: structure of the schizosaccharomyces pombe ychf gtpase
63c1jalA_



not modelled 99.8 24 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ychf protein;
PDBTitle: ychf protein (hi0393)
64c2ohfA_



not modelled 99.8 20 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein 9;
PDBTitle: crystal structure of human ola1 in complex with amppcp
65c2elfA_



not modelled 99.8 14 PDB header:translation
Chain: A: PDB Molecule:protein translation elongation factor 1a;
PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei
66d2cxxa1



not modelled 99.8 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
67d1r5ba3



not modelled 99.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
68d1g7sa4



not modelled 99.8 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
69c3lxwA_



not modelled 99.8 17 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 1;
PDBTitle: crystal structure of human gtpase imap family member 1
70d1xzpa2



not modelled 99.8 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
71d1puia_



not modelled 99.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
72d1udxa2



not modelled 99.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
73c2hf9A_



not modelled 99.8 15 PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:probable hydrogenase nickel incorporation
PDBTitle: crystal structure of hypb from methanocaldococcus2 jannaschii in the triphosphate form
74c3o47A_



not modelled 99.8 20 PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
75c2wsmB_



not modelled 99.8 15 PDB header:metal binding protein
Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb);
PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus
76c3p1jC_



not modelled 99.8 14 PDB header:hydrolase
Chain: C: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
77c2dy1A_



not modelled 99.8 20 PDB header:signaling protein, translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of ef-g-2 from thermus thermophilus
78d2qn6a3



not modelled 99.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
79c2xexA_



not modelled 99.8 22 PDB header:translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g
80c3p1jB_



not modelled 99.8 18 PDB header:hydrolase
Chain: B: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
81c2qagA_



not modelled 99.8 16 PDB header:cell cycle, structural protein
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of human septin trimer 2/6/7
82c3lxxA_



not modelled 99.7 19 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 4;
PDBTitle: crystal structure of human gtpase imap family member 4
83c2wkqA_



not modelled 99.7 16 PDB header:transferase, cell adhesion
Chain: A: PDB Molecule:nph1-1, ras-related c3 botulinum toxin substrate
PDBTitle: structure of a photoactivatable rac1 containing the lov22 c450a mutant
84d1mkya1



not modelled 99.7 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
85d1nrjb_



not modelled 99.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
86c1zunB_



not modelled 99.7 21 PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylate transferase, subunit
PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae
87c3lvrE_



not modelled 99.7 20 PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
88c2bm0A_



not modelled 99.7 22 PDB header:elongation factor
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a
89d1s0ua3



not modelled 99.7 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
90c1skqB_



not modelled 99.7 23 PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-alpha;
PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp
91d1efca3



not modelled 99.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
92c2rexD_



not modelled 99.7 16 PDB header:signaling protein/lipoprotein
Chain: D: PDB Molecule:rho-related gtp-binding protein rho6;
PDBTitle: crystal structure of the effector domain of plxnb1 bound with rnd12 gtpase
93d1shza2



not modelled 99.7 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
94d1jnya3



not modelled 99.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
95d1mkya2



not modelled 99.7 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
96c2q3fB_



not modelled 99.7 12 PDB header:protein binding
Chain: B: PDB Molecule:ras-related gtp-binding protein d;
PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp
97d1ds6a_



not modelled 99.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
98c2h5eB_



not modelled 99.7 17 PDB header:translation
Chain: B: PDB Molecule:peptide chain release factor rf-3;
PDBTitle: crystal structure of e.coli polypeptide release factor rf3
99d2fh5b1



not modelled 99.7 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
100c3cb4D_



not modelled 99.7 20 PDB header:translation
Chain: D: PDB Molecule:gtp-binding protein lepa;
PDBTitle: the crystal structure of lepa
101d1zj6a1



not modelled 99.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
102c1m2oD_



not modelled 99.7 16 PDB header:protein transport/signaling protein
Chain: D: PDB Molecule:gtp-binding protein sar1;
PDBTitle: crystal structure of the sec23-sar1 complex
103c2h57A_



not modelled 99.7 15 PDB header:transport protein
Chain: A: PDB Molecule:adp-ribosylation factor-like protein 6;
PDBTitle: crystal structure of human adp-ribosylation factor-like 6
104d1zcba2



not modelled 99.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
105d1upta_



not modelled 99.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
106d1vg8a_



not modelled 99.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
107d2qtvb1



not modelled 99.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
108c3p27A_



not modelled 99.7 22 PDB header:signaling protein
Chain: A: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: crystal structure of a translational gtpase (gdp form)
109c2fg5A_



not modelled 99.7 12 PDB header:signaling protein
Chain: A: PDB Molecule:ras-related protein rab-31;
PDBTitle: crystal structure of human rab31 in complex with a gtp2 analogue
110d2fg5a1



not modelled 99.7 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
111c3r7wC_



not modelled 99.7 12 PDB header:protein transport
Chain: C: PDB Molecule:gtp-binding protein gtr1;
PDBTitle: crystal structure of gtr1p-gtr2p complex
112d1yrba1



not modelled 99.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
113d2al7a1



not modelled 99.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
114d1zd9a1



not modelled 99.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
115c2j0vD_



not modelled 99.7 17 PDB header:nucleotide-binding protein
Chain: D: PDB Molecule:rac-like gtp-binding protein arac7;
PDBTitle: the crystal structure of arabidopsis thaliana rac7-rop9:2 the first ras superfamily gtpase from the plant kingdom
116d1mh1a_



not modelled 99.7 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
117c2rdo7_



not modelled 99.7 28 PDB header:ribosome
Chain: 7: PDB Molecule:elongation factor g;
PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound
118c3t1tC_



not modelled 99.7 13 PDB header:hydrolase
Chain: C: PDB Molecule:gliding protein mgla;
PDBTitle: mgla bound to gdp in p1 tetrameric arrangement
119c3geiB_



not modelled 99.7 21 PDB header:hydrolase
Chain: B: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp
120c2qa5A_



not modelled 99.7 19 PDB header:cell cycle, structural protein
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of sept2 g-domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0